Dbfetch
LOCUS XM_012202691 1854 bp mRNA linear INV 02-APR-2015 DEFINITION PREDICTED: Atta cephalotes E3 ubiquitin-protein ligase TRIM23-like (LOC105621222), mRNA. ACCESSION XM_012202691 VERSION XM_012202691.1 DBLINK BioProject: PRJNA279976 KEYWORDS RefSeq. SOURCE Atta cephalotes ORGANISM Atta cephalotes Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Atta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012130096.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Atta cephalotes Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1854 /organism="Atta cephalotes" /mol_type="mRNA" /db_xref="taxon:12957" /chromosome="Unknown" /sex="male" gene 1..1854 /gene="LOC105621222" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90 long SRA reads, 6 Proteins" /db_xref="GeneID:105621222" CDS 1..1641 /gene="LOC105621222" /codon_start=1 /product="E3 ubiquitin-protein ligase TRIM23-like" /protein_id="XP_012058081.1" /db_xref="GeneID:105621222" /translation="MDENADRLSKYTKHSLKTAPKSNVLECRVCEEVFTVDGVKVPRL LHCGHTVCHSCLLRLRTCMSEQQFLLCPFDRQPTAIHENSIYSLKKNFALIELLERLE QSNSQKTLVLERERLQSNLSCDEDEAHTAVLYCTVCATHLCEACDTITHSSKTLGKHR RVPLSEKPREKPRCPIHTADVAEFTCTQEGCHNSLMCYLCKEYGKHSTHKPVLVEEEA ENIRKSIIAALQKMTQFMESMRDTAHKIEIVIEELEGWAIEDARRRVRYHFEELRAVL TEQEKTAMAYIETETRGRLCALRQQQKDLTSTRSQVAGVCIQCESILDSEDWKLLSSS EKVKEVLATLEQQQQHYAQLGPDFLSPESSIPIIFSRDNRIHIGTKIDMRVVILGLDG AGKTSILSAMRGVTLPNPPIPTIGFNVESLEYMNLVFTLWDVSGHQKFRPLWKHYYHN TQAVIFVVDASDRSRFEEARKELSKILYERELKDALLLIYANKQDVPGCASVEELVDI LGLHKLCCARIWHIQGSSLVTNASGTLQGLDWLSTQCV" ORIGIN 1 atggatgaaa acgcggatcg actgagtaaa tacacgaagc attcgctaaa aactgcgcct 61 aagtcaaatg ttctggaatg tcgagtttgc gaggaagttt tcacagtgga cggtgtgaaa 121 gtgccacgtt tgttgcactg tggacacaca gtgtgccatt cgtgcttact gcggttgagg 181 acttgtatgt cggagcaaca gtttttgcta tgtccctttg atcgacaacc taccgccatt 241 cacgagaaca gcatctatag tctgaagaag aactttgcgc ttatcgaact gcttgaacga 301 ctggagcagt ccaacagcca gaaaacactg gtattggagc gtgagaggct tcagtcgaat 361 ctatcgtgcg acgaggacga agcacatact gcagttcttt actgtactgt ctgtgccacg 421 cacctgtgtg aagcttgcga cactatcaca cattcgtcca aaaccctggg caaacataga 481 cgcgtgccgc tgtcggagaa gccacgtgag aagcctcgct gtccaataca cacagcggat 541 gtggccgaat tcacttgtac tcaggaaggt tgtcacaatt ccttgatgtg ctacctatgc 601 aaagaatatg gcaaacatag tacgcacaag ccagtattgg tcgaggaaga agccgaaaat 661 atcaggaaat ccattatcgc ggcattgcag aagatgacgc agtttatgga aagcatgaga 721 gataccgcac ataaaataga aatagtaatt gaagaattgg aaggctgggc gatcgaagac 781 gcgaggagga gggtgcgata tcatttcgaa gaattacgtg ctgttttgac tgaacaagaa 841 aaaacagcga tggcgtatat cgagacggag actcgcggta gactttgcgc attgagacaa 901 caacagaaag atctcacgtc tacgagatca caagtggccg gtgtatgcat ccaatgcgaa 961 agcatactcg attccgagga ctggaagttg ctgagcagct cggaaaaagt caaggaagtg 1021 ctggcaacat tggagcaaca gcagcaacat tatgcgcaat taggaccgga ttttctcagt 1081 cctgaatcct ccattcccat tatatttagt agggataaca gaatacatat tggaacaaag 1141 atcgatatgc gcgtagtaat cctaggactg gatggtgcgg gaaagacaag tattttatct 1201 gctatgcgag gtgtcacgct gccaaatcca ccgattccca ctatcggctt caacgttgaa 1261 agtctggagt acatgaatct cgtatttact ctctgggatg ttagcggtca tcagaagttt 1321 cgaccactgt ggaagcatta ctatcataat acacaagctg ttattttcgt ggttgatgct 1381 agcgatagat ctcgcttcga agaggcacga aaagaattat caaaaatact ttatgaacga 1441 gaactgaagg atgctctact tttaatatat gctaataaac aggacgttcc tggttgtgcg 1501 agtgtagagg aattagtcga tatacttggc ttgcataaac tttgttgtgc gagaatatgg 1561 catattcaag gctcatcgtt agttaccaat gccagtggta cgttgcaagg tcttgactgg 1621 ctttcgacgc aatgtgtata aatttttttc tttataaaat tatttatgta tggaaaaagc 1681 cgaagacaca tgtaacgcta attaattgtg atttccacgt taagatgata cgaagcagac 1741 tgaagttaga taggtagata gatatcatgc aagataaata tttgtacgta cagtcgacgt 1801 tgaaaatgat ttgttttcta gctgttccca taaaataaac tcgaatatcg cacg //