Dbfetch
LOCUS XM_012200296 2099 bp mRNA linear INV 02-APR-2015 DEFINITION PREDICTED: Atta cephalotes elongation factor 1-gamma (LOC105618765), mRNA. ACCESSION XM_012200296 VERSION XM_012200296.1 DBLINK BioProject: PRJNA279976 KEYWORDS RefSeq; corrected model. SOURCE Atta cephalotes ORGANISM Atta cephalotes Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Atta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012130082.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Atta cephalotes Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-12 ADTU01012934.1 10056-10067 13-162 ADTU01012934.1 10195-10344 163-226 ADTU01012934.1 10960-11023 227-369 ADTU01012934.1 11100-11242 370-672 ADTU01012934.1 11547-11849 673-705 ADTU01012934.1 11989-12021 706-990 ADTU01012934.1 12023-12307 991-1143 ADTU01012934.1 12387-12539 1144-2099 ADTU01012934.1 12620-13575 FEATURES Location/Qualifiers source 1..2099 /organism="Atta cephalotes" /mol_type="mRNA" /db_xref="taxon:12957" /chromosome="Unknown" /sex="male" gene 1..2099 /gene="LOC105618765" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 143 long SRA reads, 3 Proteins" /db_xref="GeneID:105618765" CDS 1..1299 /gene="LOC105618765" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: elongation factor 1-gamma" /protein_id="XP_012055686.1" /db_xref="GeneID:105618765" /translation="MASGILYTYPENFRAYKALIAAQFSGIQIKIADDFVFGETNKSE AFLKKFPLGKVPAFETCDGKYITESNAIAYYVANDQLRGKTDIERALVIQWLGFADSE ILPASCAWVFPLLGIMPYHKQTVEHAKEDIYKALTALNSHLLTRTYLVEERLTLADIC VAMTLLHLYQYILEPELRKPYQNVNRWFQTVIYQPESIAVIGAFKLADKTIEYDPKKF AENQGKSSKKEKKEKESKKEAKESKKECKVVTEKTAAVEDEADATEEALAAEPKKKNP FASMPKSSFDLDDFKRFYSNEDESKSIPYFWQKFDSENYSIWLSEYKYNNELTKVFMS CNLISGMYQRLDSLRKGAFASCCIFGEDNDNTISGIWVWRGQDLVFTLSPDWQVDFES YSWTKLDPSKEETKTLVEQYFSWVGTDKEGRKFNQGKVFK" ORIGIN 1 atggcgtccg gaattcttta cacgtacccg gaaaatttcc gagcctacaa ggccctgata 61 gcggctcaat tctctggcat ccagattaaa attgccgacg acttcgtctt tggcgagact 121 aacaaaagcg aagcgtttct gaagaagttt ccgttgggaa aggtcccagc atttgaaaca 181 tgtgatggaa aatatattac ggaaagcaat gcaattgctt attatgtggc taatgatcaa 241 ttgagaggga aaactgatat tgaacgtgca ttggttatcc aatggctagg atttgctgat 301 tctgaaattc ttcctgccag ctgtgcttgg gtgtttcctt tacttggaat aatgccatat 361 cataaacaga ctgtggagca tgctaaagaa gatatatata aagcactcac tgctttgaac 421 tctcatttgc ttacacggac ttacttagta gaagaacgat tgactttggc ggatatttgt 481 gtagctatga cattgttaca cttgtatcaa tatattcttg aaccagaatt acgtaagcct 541 taccagaatg taaatcgatg gtttcaaacg gtcatttatc aacctgaatc cattgctgta 601 atcggtgcct ttaaattggc ggataagact atcgaatatg atcctaagaa atttgcagaa 661 aatcagggaa agagttcgaa aaaagaaaag aaagaaaagg aatctaaaaa ggaagctaag 721 gagtctaaga aagaatgtaa agttgtaaca gaaaagactg cagcagtaga agatgaagct 781 gatgcaacag aggaggcttt agccgccgag ccgaaaaaaa agaatccctt tgcttcgatg 841 cctaaaagct cattcgatct tgatgatttt aaacgatttt actccaacga agatgaatct 901 aaatcaattc cttacttctg gcaaaagttt gattcggaaa attatagtat ttggcttagc 961 gaatataagt ataataatga attaacgaag gttttcatgt cctgcaattt aatcagtggt 1021 atgtatcaac gattagattc attgagaaaa ggtgcatttg ctagttgctg tatattcggg 1081 gaagacaatg acaatacgat cagtggcatt tgggtctggc gaggacaaga ccttgttttt 1141 acactgagtc cagattggca agtggatttc gaatcttata gttggacaaa gcttgatcca 1201 tctaaggaag aaacaaagac attggtcgag caatatttca gttgggttgg cacggacaaa 1261 gagggacgta aattcaatca aggaaaagtt ttcaagtaaa atcttgcatc aaataaggag 1321 acaaaataaa aacagaaaaa tctattcgaa tgaaataaat ctaaagaaat gataaaatat 1381 cagaaaagat ttacatgcgc tctttaaaaa ccctgtattt aagataatca cctgatctct 1441 tttgcctaaa tacatgttcc tttctctcta aatatgaaat ttcttgtatc catataggca 1501 tatattgctt catatgtatt tttagtttct aaaatatata caagatttta tcgtgtatat 1561 acgtgtatgt acatatatgt gcacgcacat acgatatata atatataaaa gtacatatta 1621 agatttatat atcatttgga aagttttaag aaattattta ttttcatctc gatgacacga 1681 tatttttttt tatttatctc tgtcattttt acaaattaat acgagctgtt aattcaaatt 1741 gaatgaatct cgaataagaa gatatacatg cacaagtaga gaaagatatc catattatgc 1801 actctagatt aagtttatga aaaatgtaat aattttatta ctaaggatcg ttttatatat 1861 acatatatat ttgttgcagt gatttaattt ggaattcata tgaaagatac tgtatcttga 1921 ttttgatatt tgtataatat tcatattgag agttaattaa aaattgttat atatgcaaca 1981 tatatgtact taacacatac ttaacgcatt ttaaaaagaa gtatgaataa tttctttgat 2041 attgtgatac aaacgtgtat tttcacagaa ataaattgga tattgttaaa gtcctaaaa //