Dbfetch
LOCUS XM_006655710 2930 bp mRNA linear PLN 06-APR-2021 DEFINITION PREDICTED: Oryza brachyantha U-box domain-containing protein 35 (LOC102722964), transcript variant X1, mRNA. ACCESSION XM_006655710 VERSION XM_006655710.2 DBLINK BioProject: PRJNA232125 KEYWORDS RefSeq. SOURCE Oryza brachyantha (malo sina) ORGANISM Oryza brachyantha Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_023168.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 4, 2016 this sequence version replaced XM_006655710.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza brachyantha Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2930 /organism="Oryza brachyantha" /mol_type="mRNA" /bio_material="IRGC:101232" /db_xref="taxon:4533" /chromosome="6" gene 1..2930 /gene="LOC102722964" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:102722964" CDS 134..2548 /gene="LOC102722964" /codon_start=1 /product="U-box domain-containing protein 35" /protein_id="XP_006655773.1" /db_xref="GeneID:102722964" /translation="MEIQEAAGAGEDGLEMEAPSVSTVAIAVNGSKSSRHALKWALDK FVPEGRVLFRILHVRPIIKMVPTPMGNFIPITQVREDVATAYRKDVEWQANNMLLPYK KMCAQRKVEAEAVLLESDDVPTALSEEINKFNVSKLVLGSSSSIFRRKHKGSKTASRI CECIPSFCTAYVVSKGKLSSVHSATSDNVEAPESISSSTVSSPSSRSLASSVPSEWGD TYGSANVTFHQSSLSSQRDQALANMNKLYNRTGSPSGSGRTEISYHDDTVLTSSHSVN SEAQFSSSSSGKSIYKSFNRDHSFDNSDQASVSDIATNLKHSHDQEYLKLEIDRLRVK LRHLQKLNEIAQNESFDASQKLHKLGIQDIEDEIKLKESELTEEKVRRLIRKKEREQQ EVARREDQFKSDSAEREAKQNNDIQEGDENKTEERIFGRCFDEYNRYTWEEIQASTSS FSVDLMIGKGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLL MLGACPEHGCLVYEYMENGSLDDMLQRRNNTPSLTWFDRLRIAWEVATALMFLHSSKP EPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPE YQRTGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEEGHFLDILDASAGQWPQ KEAQELAVLALKCAEMRRRDRPDLSDHVLPALERLKDVAAKAREMALHGQTPPPSHFI CPILQEVMVDPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKNLIPNHSLRSAIM DWRSKG" ORIGIN 1 ctcctctcta cccgccgcct tgggctccag tcttctcccc tctcgtcgtc attctcctct 61 cctctcctcc atggcaatgg ctccaagtga ttagtcagga ggaggaaaca agaatcgacg 121 gccgtagggg gggatggaga tccaggaggc cgcgggcgcc ggggaggatg ggttggaaat 181 ggaggctccg agcgtgagca cagtggcgat tgcggtgaac gggagcaaga gcagcaggca 241 cgccctcaag tgggcgctcg acaagttcgt gcccgagggg agggtcctct tccggatctt 301 gcatgtccgc ccgatcatca agatggtgcc cactccaatg ggaaatttca ttccaatcac 361 acaagtgcga gaagacgtag caactgcata caggaaagat gtggaatggc aagcgaacaa 421 tatgctactt ccttacaaga agatgtgtgc tcagagaaag gtagaggctg aagctgttct 481 actcgaatct gatgatgttc ctacagcttt aagcgaagaa atcaacaaat tcaacgtctc 541 taagttagtt ttaggttctt ctagcagcat attccgaagg aaacacaaag gaagtaagac 601 tgcatcgaga atctgtgagt gcattccaag cttctgcaca gcatacgttg tctcaaaagg 661 aaaactatca tctgttcact cagctacatc tgataatgtt gaagcacctg aatccatatc 721 ttcttcaact gtttcatccc ctagctctag aagccttgca tccagtgtac cctcagaatg 781 gggagacacg tatgggtcag caaatgtgac attccaccag tcatctctgt catctcagcg 841 tgaccaagca ctggcaaaca tgaacaaatt atataacagg acaggtagcc cttcaggcag 901 tggtaggact gaaatctcct accatgatga tacagtcctg acaagttcgc actcggtgaa 961 ttcagaagca cagttcagta gtagcagcag tgggaagtct atctataaga gcttcaatag 1021 agatcattca tttgataact ctgaccaggc atctgtttcg gacatcgcaa caaatctgaa 1081 acattctcat gaccaggagt atctaaagct tgagattgac aggctgaggg ttaaactacg 1141 gcatcttcag aagcttaatg agatagctca gaatgaatca tttgatgcca gtcagaaatt 1201 acataagttg ggcatccagg acattgagga tgaaattaag cttaaagaga gtgaactgac 1261 agaagaaaag gtaaggagat tgataaggaa aaaagagaga gaacaacagg aagttgccag 1321 aagagaggat caattcaaaa gtgatagtgc tgaaagggaa gcaaaacaga ataatgatat 1381 tcaggaaggt gatgagaata agacagaaga gaggattttt gggcggtgtt ttgatgagta 1441 taataggtat acctgggagg agatacaagc atcgacttca tcattctctg ttgatcttat 1501 gattggcaag ggatcatatg gcacagtcta caaggctaag tttcatcata cagttgcagc 1561 agtaaaagtt ttgaactccc cggaaggctg tggaactcag caattacaac aggagcttga 1621 ggtcctaggt aaaatccggc accctcactt gctcctgatg ctaggtgcat gccctgaaca 1681 tggttgcttg gtctatgaat acatggaaaa tggtagtttg gatgacatgc tacaacggag 1741 aaataatacg ccgtccttga cctggttcga ccgtttaaga attgcttggg aggttgccac 1801 tgctcttatg ttccttcaca gttccaaacc agagcctatc atacaccggg atctgaagcc 1861 tgcaaacata ctacttgaca ggaacttggt tagcaagata ggtgatgtag gcttatcaac 1921 tttgcttcct agtatggatc aatacctgtc cacaatgatc aagaacactg ccccagtggg 1981 cactttctgt tacatagatc cagagtacca gagaactggt gtggtctcca tgaagtccga 2041 tgtgtacgcg ctagggatag tgatattgca attgctgaca gcgaagtcac caatgggaat 2101 tgctcatgtt gtggagactg cactagaaga gggacacttt ttggacattc tggatgcatc 2161 tgctgggcag tggcctcaga aagaggcaca ggaattggct gtcctagccc tcaagtgtgc 2221 tgaaatgagg cgcagagacc gtcccgactt gagtgatcat gttcttccgg cactggagag 2281 actgaaggat gttgcagcca aggccagaga aatggctctt catggccaga caccacctcc 2341 aagtcacttc atttgcccca tacttcagga agtgatggtt gatccatacg ttgcatcaga 2401 tggttacaca tatgaccgta aggcaatcga gctgtggctt agtatgaatg acaagtcccc 2461 tatgacaaat ctgcgattgc cccacaagaa cctgataccc aatcactccc ttcgttctgc 2521 aatcatggac tggagatcaa agggctagca gctgatgcac attctgggtt gcatcctcca 2581 caatgttggc aatcttgcag ttgatgaatt cttttctttt caaaatgtaa agttttggca 2641 gatctagtgt agaagtagta ttcatgtttg ctcaaaaaag aaaaaaaaag ataagtggtg 2701 ttcataaaga ggttcaagtt gtgcagcttt atcaaaatat agaaattatt tcctagctca 2761 taggcaggca ttccacttca ctgtcctagt gaaggtaaca attatttttt tcccctttgc 2821 catttgtaat aatgtgttgt aagcttgtaa ttagtgatct ctcaacattt gacctgaatg 2881 taggacaact taatgaaaaa ctaatatgaa gcttgcagag agttgttcta //