Dbfetch
LOCUS NM_206145 2753 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Poly(A) binding protein interacting protein 1 (Paip1), transcript variant B, mRNA. ACCESSION NM_206145 VERSION NM_206145.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2753) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2753) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2753) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2753) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2753) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2753) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2753) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2753) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2753) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2753) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2753) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2753) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2753) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2753) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2753) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2753) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2753) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2753) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2753) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2753) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2753) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2753) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2753) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2753) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_206145.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2753 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2753 /gene="Paip1" /locus_tag="Dmel_CG8963" /gene_synonym="CG8963; Dmel\CG8963" /note="Poly(A) binding protein interacting protein 1" /map="53E4-53E4" /db_xref="FLYBASE:FBgn0034181" /db_xref="GeneID:36913" CDS 334..2013 /gene="Paip1" /locus_tag="Dmel_CG8963" /gene_synonym="CG8963; Dmel\CG8963" /note="CG8963 gene product from transcript CG8963-RB; CG8963-PB; Paip1-PB" /codon_start=1 /product="Poly(A) binding protein interacting protein 1, isoform B" /protein_id="NP_995867.1" /db_xref="FLYBASE:FBpp0086168" /db_xref="GeneID:36913" /db_xref="FLYBASE:FBgn0034181" /translation="MSCRAPFQPDDQYEQLRRPNVGGAGGVAMPGLDQQAHLFGEYAG AQAYGQVVGNFPVQAMQPQAQTLSDASNLSATATIFIPRGAAPPQQQSRHQQYQQAGG AGGGAPYGQQQPRYVNGFKHHHQQHHQQPHYNHHHNHQQKFNNDMQKLTNSVQNRLHL NSQQGSAGNYYQQQQVHQNTHHHQQHQQQHQPHNQHAKFQRHFHLNNSFQQIVQQTQH NQPQQPHHQQHNQQQQQYIQNQNQQPQPSTSTAAASSSSSNSSQPDMATIALEYLDTV IHCLNQNPGQFDSIASRFLTIFDGMENNQFVLSIAMEDIFEKSIEQPNFRYMGAKLYN LLHMLNSKPDSLFHTLLKCKLDYHQEEVTKYMRSNEQQKVRETALFLAELYMQLRGDD DSRIQLIAVNIVYSLSKLLASESNENVRCLCQTLKLAGYDLTADCPKDIQEIITALQA IELKSPGKYPMAASVIALQQNNWGRKVSNALGDDEDTVKEPPRLSDEPVFYGPDGREL TAEETDFLAGGDNDGDDDFDGDGADLEIDAEMDEETERAYKEFCKQGKQKT" ORIGIN 1 aggtaagttt tcactagcca cttgcgacca caccgacggt gaaaaggcga aataataaat 61 tttaacaaat tgccgcagtg taaattaaag gtgcgtagca ttttacattc cctttcagcg 121 gtcaccggcc gtcccgcccc cgcaccgtcc aatttaacat tttttacggc cagtaaaacg 181 tgcaatccca cccaaaatca gacacgaaat tcggagcagc gcatcagaga cgcagacgag 241 aaagtgacga cgcagcaaaa cgaagcaaca aaaacgaaaa tcggcgacgt acacattcaa 301 cttgaacaaa tttaagtttt cgagtccaac gcaatgtcat gccgcgcccc cttccagccc 361 gacgatcagt atgagcagct gcgccggccg aatgtcggcg gagcaggcgg agtggccatg 421 ccgggactgg atcagcaggc gcatctcttt ggggagtacg ccggagcgca ggcgtacggt 481 caggtggttg gcaattttcc tgtgcaggcc atgcaacccc aggcgcagac tctgtccgat 541 gcgtccaatc tgtcggccac ggccacaatt ttcatccctc gaggagctgc tcccccgcag 601 cagcagtcgc gacatcagca ataccagcag gctggtggag ccggtggagg agctccttat 661 ggccaacagc agccgcgcta tgtgaatggt tttaagcatc accatcagca gcaccaccag 721 cagccgcact acaaccatca tcacaatcat cagcagaagt tcaacaacga tatgcagaag 781 ctaacgaatt ccgtgcagaa tcgcctgcac ctgaatagcc agcagggctc agccggcaac 841 tactatcagc agcagcaggt acaccaaaac acacaccacc accaacaaca ccagcagcag 901 catcagccac acaaccaaca cgccaagttt caacggcact tccacttgaa taactcattc 961 caacaaatcg tacagcaaac acagcacaac cagccgcagc agccgcacca ccagcagcac 1021 aaccaacagc agcagcagta tattcagaac cagaatcaac aaccgcagcc atccacttcg 1081 actgcggcgg cctcctcgtc gtcctcgaac tcttcgcagc cggacatggc caccatagca 1141 ctggagtatc ttgatacagt catacattgc cttaaccaga atccgggcca atttgattcg 1201 attgcatcac gcttcctgac cattttcgat ggcatggaga acaaccaatt cgtgctctcc 1261 atcgccatgg aggacatctt cgagaagtcg atcgagcagc cgaacttccg gtacatgggc 1321 gccaagctgt acaacctgct gcacatgctc aactcgaagc cggactcgct gttccacacg 1381 ctgctcaagt gcaagcttga ctaccaccag gaggaagtga ccaagtacat gcgctccaac 1441 gagcagcaga aggttcgcga gactgccctc tttctggccg agctgtacat gcagttgcgc 1501 ggcgacgacg actcgcgcat ccagttgatc gctgtgaata ttgtatattc gctgagtaag 1561 ctgctggcca gcgagagcaa cgaaaatgtt cgctgcctgt gccagaccct caagctggct 1621 ggatatgatc tgacagccga ttgccccaag gacatacagg agatcatcac cgccctgcag 1681 gcgatcgagc tgaagtcgcc gggcaagtac cccatggcgg caagtgtaat tgccctgcag 1741 cagaacaact ggggcaggaa ggtgtcgaac gctctgggag acgatgaaga tacagtgaag 1801 gagccgccgc gcctgagcga tgagcccgtc ttctacggac ctgatggccg cgaattgact 1861 gccgaggaga ccgattttct ggccggcggg gataatgatg gtgatgatga ctttgatggg 1921 gatggtgccg acctagaaat cgacgcggaa atggacgagg aaaccgagcg ggcatacaag 1981 gagttctgta agcagggcaa acagaagacc tagacgactg tggagaactg tgttgcattg 2041 gacggattca tgagggcgtg gtcgttggca ggatatagct tgggtatagg agggatggtg 2101 gagagcgtag gagtggagca tttccaacaa attctcggtt gtaggatcga tgattgcagt 2161 tgcttggttc agaaccaatt gtgattatct tttaaattat tgatagcaaa ttgtttgtga 2221 tatcttcgtg tttcatgcac ctatcataat atgacatgtg ttaatgactt tgttcgaacg 2281 ctttttgtgt gatacgcccg ttttgtatct ctgataacta actctctgcc atgatagcca 2341 gttcattcat tcagtttgta ctttttaact tgaattaaat aaatttgaat agtcgcgaag 2401 ccaggatttc gaccgtaaac ggtaaaagaa atatatatat atataactat agccactgcc 2461 acgccgaagt gaaccgctga tacagacaca cacgcagctg cactcaaaga ctcgtactca 2521 tatgcgcacc cacacacttg catggcacat atgcagaccc ataaacggca gaaaaaaaca 2581 aaatcgcaaa tttcacattc aattaaacga cattctcttg atcatacaaa tcgaaaaacg 2641 aaagaaaaaa aaacgacagc agccacgcct aatttttaaa taattgtaat taatgttaac 2701 gaatccatga tttaattata aataaaattt atcgaattgc gtttaaaaca aaa //