Dbfetch
LOCUS NM_206068 3691 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG12128), mRNA. ACCESSION NM_206068 VERSION NM_206068.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3691) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3691) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3691) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3691) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3691) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3691) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3691) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3691) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3691) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3691) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3691) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3691) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3691) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3691) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3691) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3691) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3691) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3691) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3691) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3691) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3691) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3691) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3691) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3691) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_206068.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3691 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3691 /gene="CG12128" /locus_tag="Dmel_CG12128" /gene_synonym="Dmel\CG12128" /map="46D4-46D6" /db_xref="FLYBASE:FBgn0033473" /db_xref="GeneID:36042" CDS 715..1467 /gene="CG12128" /locus_tag="Dmel_CG12128" /gene_synonym="Dmel\CG12128" /note="CG12128 gene product from transcript CG12128-RB; CG12128-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_995790.1" /db_xref="FLYBASE:FBpp0087482" /db_xref="GeneID:36042" /db_xref="FLYBASE:FBgn0033473" /translation="MEPQSESCRKQRGTLVSPDEPRRETGVYWGYQVRIAHSMSEIFT KSPYATGYDVTVGTSDRGTNVHEVPNRSYNFNHMLIVFGGLQGLESALANDEKLTVDD PELLFDHYVNVLPRQGSRTIRTEEALLIALAALQEKLQPQVADVEIDLTDLLPKSEDS GIAVRRDVLVSKKQKKRKQVEDTPDETVVDEPSFSKPLPKVARLTANPFADSSEELAK NTPAQDDFEVVSSTTVSGTSHSCADDDLSRFD" ORIGIN 1 ttatgttcag accacatact gtccaccgag gttgcaccca gcagcaatgg gaggcctatt 61 gggccccaca agtcctggaa gaaggtgaac gaggagcgga aagcgttgaa gcggcagcgc 121 aagcaggaca agctgctcaa ggagctgcag caagccaaag aggcagaatc acaggcggga 181 aaggcagcca atgaggtgca ggctaaggat aagcctaatc cgtccacgct gagcatagct 241 gttcccggtt caattctcga gaatgcccaa tccaacgagc tgcgggccta cgtggccggt 301 caaatagccc gggccgcctg catctttcgg gtgaacgagg taatcgtctt cgacgacgtg 361 ggtatagcca ccgcccggga aacaaagcgt agttacgagg cagatgggga aggcagcagc 421 actggcactg tgcgcagcag ctcattacaa ctggcacgca tattgcagta tctggaatgc 481 ccgcagtatc tccgaaaata cttcttcccg ctgcacaaag accttaagta ctctggcttg 541 ctgaatccat tggacacacc gcaccatctc cgtcaacaga gcaaattcag gtatcgtgag 601 ggcgtcattt gcgacaagaa ggccaaggag ggacacagct acgccaacgt ggggctgctt 661 aacgacgttt tggttgacaa ggcaatagaa ccaggcgtca gagtaactgt aaaaatggaa 721 cctcaaagtg agagctgtag aaagcagcgg ggaacactag ttagcccgga tgaaccacgt 781 cgggaaacag gtgtttattg gggctaccag gtgcgcatcg cacactccat gtctgagatt 841 tttaccaaat caccctacgc aaccggctac gatgttacgg tgggtacctc ggatcgcgga 901 accaacgtac atgaggtgcc caaccgatca tataacttta atcacatgct cattgtattt 961 ggcggactgc aaggcttgga atctgccttg gccaacgacg agaaactgac cgtagatgat 1021 cctgagctgc tgttcgacca ctatgtaaat gttttaccac gccaaggatc tcgaaccatt 1081 cgcaccgagg aagcgctgtt gattgcttta gcggctctcc aggagaaact gcaaccgcaa 1141 gtggctgatg tggagatcga tttgactgat ctgctaccta aaagtgagga ttcaggcatt 1201 gcagtacggc gagatgtttt agttagcaaa aagcaaaaga aaaggaagca agtagaggat 1261 actcctgatg aaacagtcgt tgatgaacct tcattttcaa aaccattgcc gaaagtggct 1321 cgactgacgg ccaatccttt tgccgattcc tccgaggaat tagcgaaaaa caccccagca 1381 caagacgatt ttgaagtggt ttcatccacc accgtttctg gaacaagcca ctcgtgtgca 1441 gatgacgact taagtcggtt cgattaatgg gaatagttgg aattttattt ttgtaaatat 1501 acagatccgt atgtgttgct taaagtttcg cttttgattt tcttgttatt ccactaagcg 1561 tgtatactat tttgtttttt gttgacgcga gctataacga gctatattcc tatatagaca 1621 tatacttttg ttcgaaatgt tctaataact ttatccttac acactaaatt aatacgattt 1681 taaatttcaa actcgaatgt ccaagcaaga attaagattt tgatctccta acatttttcg 1741 cattatcact tacatacata tacattacaa ttgtctatcg actcattcgt aacttaaaca 1801 taataaccta gttgtcccta taggatggac tgtctgtacc tctgttattt acacactgaa 1861 agtatatgta tgtcgtaagg aggcttcaca actgaatctc taaatgtaat atgtagctac 1921 attgtcgctg gtcatgatta gctatggaat cgagtcttga aatcgcggct ctggcagaaa 1981 gtcctcctcc aactcgatgc gcgtatcgct gtgatatcct agcaaagatt ccgtgtcctc 2041 ttccatatgt cgaatcggaa atgttttgcc atcgccaaag ctaaaggata tgtggtgaat 2101 tatatcatca gtgggaaatt gataagtaat gagtgcgtta ttgtgtatgt aatggattga 2161 ttgaagattc ggtgctgtgc agatgaagca aagctgtcat gtttatttat ttggcaaact 2221 aaaaacaaac ctttataagt tttaaatact ttaaaatcca tttaatttcg tcacttgcag 2281 aagttcaata atatatgtat ttgggcatta aggtgtacaa agtaagaaaa agtataaaaa 2341 cttgcaaaca gttactaact acataaatta aaaccatatg gaaattactg aattccgtgt 2401 gtgttaatag tgtgtactga aatctcattg cttatcatta ggtttaagtc ttgaagatct 2461 ttcgatatct acaaggatag ttggtttcat gaatgcatta gcaaggtaca aatcttcgga 2521 ggataacacc atctcatcta ctaggaaatt ccacattcga ttcttctaat ttccattaaa 2581 aaattcgata aatgcgtgtg tgaaaccaat gacatattgc ctaatgttaa cttagtcgat 2641 tatacatatg tggtgattta tattatggtc ccagccattt aaacatttaa atagcctaca 2701 ctaaacagct gatgaattgc atagaggtaa cttatttgct tactaagaac cgcaacgctg 2761 acaaatctgg cagtttactt ggctctatgg tacaaaaaca tacacataat acattctacg 2821 ttattattta aactggcaga tcgccattcg gcgggcgtgg gaagcctttg gcaggatcag 2881 cgcttgtcaa cggatgatct ccaatcattt cgatgtatac ggctgcccca ttgactccac 2941 gctcgtccgg gctagacatg gctgctggcg tgctgcagtc taatgattgg ccgtttgcca 3001 gcttttgctg ccgctcgttg agctcgtccc ggcatgtaga tggcggctgg atctgcaaca 3061 gctgggttgg caggacgctg gtgcttctta cttgatgagg cgattggttg tgatgatggt 3121 tagtggtgtc gaggggacta gcgccaatca acttatctgt tggattgcca tctaacctgc 3181 tggtggtcgt atctcccatg gcatcgtacc gctgggtggg agagctggtg gacactcgac 3241 tctggtcgct ggaggtcgga tagctgtagc catcaccgcg actagttccg tgattatgaa 3301 taagcagaag gttggggtat tgcgttaaac agagagttgt aaacataaat attgtttttg 3361 tttttttaca gtttagctta ttgtagttgt agctgttgtt gtttgaggtt tttttgttat 3421 ataattttgc acagatgtgt gaatacgaat gtaaaaattt aatcgacttt tcatgtgtgg 3481 caagtgtttt ggttttaaag aaacttaatg agcatttaaa attcagaaag ttccgtcaga 3541 atttcaaact tggacacttt aagttagtca ctttacgggg cggacaattg gttactaagc 3601 ttgttttggt tagatctaag tgtctatttc taaaaatcgc tggcaaaatt tgtctctttt 3661 tatttacaaa aataaataac gaacacaatt g //