Dbfetch
LOCUS NM_202484 4282 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein (AT3G03790), mRNA. ACCESSION NM_202484 VERSION NM_202484.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 4282) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 4282) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4282) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 4282) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003074). On Sep 12, 2016 this sequence version replaced NM_202484.1. FEATURES Location/Qualifiers source 1..4282 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" gene 1..4282 /locus_tag="AT3G03790" /gene_synonym="F20H23.18; F20H23_18" /db_xref="Araport:AT3G03790" /db_xref="GeneID:821145" /db_xref="TAIR:AT3G03790" CDS 742..3987 /locus_tag="AT3G03790" /gene_synonym="F20H23.18; F20H23_18" /inference="Similar to RNA sequence, EST:INSD:EL314099.1,INSD:EL111934.1,INSD:ES176711.1, INSD:EH850173.1,INSD:ES187110.1,INSD:ES132172.1, INSD:CB254369.1,INSD:ES083648.1,INSD:EL972844.1, INSD:AU238001.1,INSD:EG445088.1,INSD:ES151825.1, INSD:AU229123.1,INSD:BP790509.1,INSD:ES045620.1, INSD:EG499474.1,INSD:BX835216.1,INSD:EG523777.1, INSD:AI994119.1,INSD:EH913955.1,INSD:EL303119.1, INSD:EH896786.1,INSD:ES187936.1,INSD:EL078617.1, INSD:BP782861.1,INSD:EH949939.1,INSD:BX838678.1, INSD:EL280169.1,INSD:EL194089.1,INSD:BP782247.1, INSD:EG499475.1,INSD:EL244496.1,INSD:BE527066.1, INSD:AV554803.1,INSD:ES212929.1,INSD:EG499478.1, INSD:AA651412.1,INSD:EH917690.1,INSD:EL011956.1, INSD:EH960740.1,INSD:EL243224.1,INSD:ES002902.1" /note="ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein" /protein_id="NP_974213.1" /db_xref="GeneID:821145" /db_xref="TAIR:AT3G03790" /db_xref="Araport:AT3G03790" /translation="MELSVSPQTQKMNLQTPRKSSLSGSRKDLWFAIREGSLVDVDSA LSILKKTGGNINLRNAYGLTPLHIAVWRNHIPIVRRLLAAGADPDARDGESGWSSLHR ALHFGHLAVASVLIDSGASFTLEDIKLRTPVDLVSGPVAQVIGEQQSSVATEVFSWGN GANYQLGTGNQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFGRGGRL GHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTWGSNREGQ LGYTSVDTQATPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSN SASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTWGHRLVTPRRVIISRNLKK AGNTLLNFHRRRPLRLTAIAAGMVHSLALAEDGAFFYWVSSDSNLRCQQLHSLHGKTV VSISAGKYWASAVTSTGEVYMWDGKNGKDIAPSLSRLHNLKRATTVAVGETHLLVVGS LYHPAYAPIVLKKSQTLQADKCREEENEELDEGFMFDDVESVNVLQSVQYDNPKERIV PSLKSLCEKVAAECIVEPRNAIQLLEIADSLGAEDLKKYCEDIVIRNLDFILTFSPQS IANTSPDVLANLEKLLDDRSSETWSSRPLPTPTATFPVVIDSEEEESESDILRTRDSH VKHFSSIGGTRMDSFLQPEDELTQHNSKEVRALRKKLQQIEILEAKQSRGQLLDGQQI AKLQKKLDIESSLVELGIPVEEFPEAKATTALPLEGKANKKGKKKKKGNQRFVQVETF PEFGEVKVEIDTMQDKEIEEICEAIKPKGGKTMLDTTMISGFPKESDFVSLSQKKDNP PDSPRSKKLATAANKKKNRKGGLSMFLTGALDDVPKPVVAPPPRPKIEGPVWGGAKIS KGLSSLRDIQDEQSKTRSHEPVRTTKNQSGDDSPGKSEGKILLSSFLTSKPIPMEPAK SLQQSDVEKGTPPWASSETPRKLSRPSLRDIQMQEVKKQQSLSHSPKTKTSGFTVATG QGSPSDSPGTNRWFKPEIDAPSAIRSIQIEEKAMKDLRRFYSSVKVVRNQP" ORIGIN 1 cagacatatg atgactgtgt atgaccttgt caacgtctga cgtgtcgcac atgtcaccac 61 gtgtcataac gatgtaaagc aaaccagtta ggtgtctgga gagagagata tggacttcat 121 ctcttctccg agtctttagc acgtcacaac ttcaaaggac tctatcgtca ttcgccgtaa 181 tttctatctt aattactgta ttacccttag gctcggagat ctctcttctc cccgtttctc 241 tctctctgtc tggctcattc agaaactttt ttatacgcct ctgtttctta tggggaagag 301 ggtatattct ctgttttgat tcgcttctgt cttaacacat tgaaattttc catagaagat 361 tccattgtgc tcttttaatc ctcttctctt tctctctgtt ttaaatacct gtctttaatc 421 gcttctctct atctctctct cttgttaaat ctcatcggag ttcaatttca ggactctcgg 481 cgctcttatg aagtgattgt gaagatttgc gtacactaag cctttgcttc agaaagttga 541 gtgatttgtt tgactcactt tcaagatgaa aaatgagctc tagcaaagat ggatggcgta 601 aactccgttg agggctatag aaatcctttt agttgtccgt ttagtgagag ttatccgagt 661 ctttttcttt ggagacattt ggtctagaca caacatttgt ggcgaacaag gttttagtgg 721 gaattcttac cgtctagaaa tatggaattg tcagtctctc ctcaaaccca aaagatgaac 781 ctgcaaactc ctcgtaaaag ctcactttca ggatctagga aagatttgtg gtttgctata 841 cgggaaggtt cgttggttga tgtggattca gcacttagca tactcaagaa gactggtggc 901 aatataaatt taaggaatgc ctatggtctc actcctctgc atattgctgt atggagaaat 961 cacattccta ttgttaggag actgcttgct gctggcgctg atccagatgc tagggatgga 1021 gaatctggtt ggagtagtct tcaccgagct ttgcattttg gccatctcgc ggtagctagc 1081 gtattgattg actcaggtgc ttcttttact ctagaagaca taaaactgcg aacaccggtt 1141 gatttggtct caggtccagt ggctcaggtt attggcgagc aacaaagttc ggtggctaca 1201 gaggttttca gctggggaaa tggtgcaaac taccaacttg gaactggcaa tcaacatgtt 1261 cagaaggtac cagggagagt tgattcactg catggttgtt ttattaagtt ggtctccgct 1321 gcaaagtttc atagtgttgc cattagtact catggagaag tctacacgtg gggatttgga 1381 aggggtggcc gccttggaca tcctgaattt gacattcata gtggtcaagc tgcagtgatt 1441 actccccgcc aggtgatatc tggtttagga tctcgccgtg taaaagcagt tgcggcagct 1501 aagcaccaca ctgttattgc tacagaaggc ggggatgtgt acacatgggg ttccaataga 1561 gagggtcagc ttggttatac ctctgtggat actcaggcaa caccccgcaa agtgacttca 1621 ttgaaggcga agattgtagc tgtttctgca gcaaacaaac acaccgccgt agtttctgac 1681 tgcggtgaag ttttcacttg gggatgcaac aaggaaggtc agcttggtta tggaacctcc 1741 aactcagcat caaactactc tcccagattg gttgattact tgaaaggaaa agtgttcacg 1801 gctattgcat cttcaaaata tcacactcta gtgctgcgaa atgatggaga ggtgtacacc 1861 tggggtcatc ggctggtgac tccaagacgt gttatcattt cccggaattt aaagaaagct 1921 gggaacacac tattgaattt tcatcgaagg agacctcttc gattgactgc aatagctgcg 1981 ggaatggtac acagcttggc tctagcagaa gatggtgcat tcttttattg ggtttcctct 2041 gactccaatc ttagatgcca acagttgcat tcgctgcacg gtaaaacagt tgtgagcatt 2101 tcagcgggta aatactgggc atctgctgtt actagtacag gtgaagttta catgtgggat 2161 gggaagaatg gtaaagatat tgcaccatct ctttctcgcc tccacaactt gaaaagggca 2221 accacagttg ctgttggcga aactcatctt ctggttgttg gttctctgta tcatcctgca 2281 tatgctccta ttgtgcttaa gaagtctcag acactgcaag ctgataaatg tagggaagaa 2341 gaaaatgaag aactggatga gggttttatg tttgacgatg tggaatccgt gaacgtgttg 2401 caatccgtgc aatacgataa tcctaaggag aggatagtgc ctagcttgaa aagtttatgc 2461 gagaaggtgg ccgcggagtg tattgtagag ccacgaaatg ctattcaatt gcttgaaatt 2521 gcggattcgc ttggagcaga ggatcttaag aagtactgtg aggacattgt gattcgaaac 2581 cttgacttta ttttgacatt ttctccccaa tctattgcaa atacatcacc tgatgttctt 2641 gccaatcttg agaaattact ggatgacaga tcatctgaaa catggagctc ccgaccactt 2701 ccaaccccaa cagccacatt tcctgttgtt attgacagtg aagaggagga aagtgagagc 2761 gacattctaa gaactcgtga cagccatgtg aaacactttt ccagtattgg tggtactcga 2821 atggattcat tcttgcaacc agaagatgag ctgactcaac acaattccaa agaagtccga 2881 gctttgagga aaaagttgca acaaattgag atacttgaag caaaacaatc gagaggacaa 2941 cttcttgatg gtcagcaaat agcaaaactt caaaagaaac tagatatcga aagttcactg 3001 gtagaacttg gtattcctgt ggaagagttt ccagaggcaa aagcaacaac agctttaccg 3061 ctagaaggaa aggccaacaa gaagggaaaa aagaagaaaa agggtaatca gagatttgta 3121 caagttgaga cattccctga atttggtgaa gttaaagtgg aaatagatac gatgcaagac 3181 aaagaaattg aagaaatctg tgaagctatc aagccaaagg gtggcaaaac catgttggat 3241 acgacgatga ttagtgggtt ccccaaagaa tcagactttg tctcactctc gcaaaagaaa 3301 gataatccac ccgattcgcc gagaagcaag aaacttgcaa cggcagcaaa caagaagaag 3361 aacagaaagg gtgggctttc catgttcttg actggtgctc ttgatgatgt ccctaaacct 3421 gttgttgctc ctccaccaag gcctaagatt gaaggtcctg tgtggggtgg ggctaagatt 3481 tctaaaggat tatcttccct gcgggatatt caagatgaac aaagcaagac ccgctctcat 3541 gaacctgtta ggactactaa aaatcagtca ggggatgatt ctcctggtaa aagtgaagga 3601 aagatattac tgagttcctt cttgacttcg aagccgattc cgatggaacc agccaaaagt 3661 ttgcagcaat ctgatgtgga aaaaggaact cctccttggg cttcctctga aactccgcgt 3721 aaactgtctc gaccttctct cagagatatc cagatgcagg aggtgaagaa gcaacagtct 3781 ctgtcccaca gtccaaagac aaaaacatca ggcttcacag tcgcaaccgg gcaaggatct 3841 ccatcagatt cgcctggaac taatcgctgg ttcaaaccag agatagatgc tccatcagca 3901 atccgatcaa tccagataga agaaaaagcc atgaaggatc tccgccgctt ctacagtagc 3961 gtgaaggtag tcagaaacca gccttgatga tgtgagtgaa tgagacatta cttttcaaga 4021 gctctcattc tcaaaactca aaagtgttgt agttgtaact gtacagatga tgtctccact 4081 gttcattggg tctcctctta actggtcagc catttttttt ctctttcttt caatgtgtta 4141 gtctttggta gtagctgtca aagtaatact catgcttatg tacatcactg gtgtacatga 4201 agctctttag tagtcttcac aaaccatttt agatgtatat atttcgtaat aataagaaaa 4261 agcttatatg atttatttca gt // Unexpected Error when closing connection to refseq from NCBI E-utilities. Non-zero exit status returned (255). STDERR: "http status: 429 Too Many Requests Too Many Requests at /nfs/public/rw/es/projects/jdbfetch/util/ncbi_refseq_fetch.pl line 124."