Dbfetch
LOCUS NM_179469 1494 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein (AT1G52730), mRNA. ACCESSION NM_179469 VERSION NM_179469.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1494) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1494) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1494) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1494) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1494) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_179469.2. FEATURES Location/Qualifiers source 1..1494 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1494 /locus_tag="AT1G52730" /gene_synonym="F6D8.2; F6D8_2" /db_xref="Araport:AT1G52730" /db_xref="GeneID:841706" /db_xref="TAIR:AT1G52730" CDS 230..1261 /locus_tag="AT1G52730" /gene_synonym="F6D8.2; F6D8_2" /inference="Similar to RNA sequence, EST:INSD:EL222970.1,INSD:EL005790.1,INSD:EL003228.1, INSD:EH798971.1,INSD:EH800811.1,INSD:BP564668.1, INSD:AV441113.1,INSD:AV442098.1,INSD:ES174267.1, INSD:AI994938.1,INSD:BP829003.1,INSD:EG438654.1, INSD:ES097466.1,INSD:AU226657.1,INSD:BP570224.1, INSD:BP628255.1,INSD:ES075612.1,INSD:BP572965.1, INSD:EL152509.1,INSD:EL298055.1,INSD:EL175977.1, INSD:EL170119.1,INSD:EG519830.1,INSD:EL989619.1, INSD:EH980558.1,INSD:BP597480.1,INSD:ES002045.1, INSD:BP570242.1,INSD:BP665564.1" /inference="similar to RNA sequence, mRNA:INSD:BX814472.1,INSD:BT008315.1" /note="Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41491 Blast hits to 21864 proteins in 790 species: Archae - 74; Bacteria - 7325; Metazoa - 14827; Fungi - 9797; Plants - 4470; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink)." /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="NP_849800.1" /db_xref="Araport:AT1G52730" /db_xref="GeneID:841706" /db_xref="TAIR:AT1G52730" /translation="MEKKKVTIPQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPM LRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHK HIVRACAFSEDTKSLLTGGFEKILRVFDMNRLDAPPTEVDKSPGSIRTLTWLHSDQTI LSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHF GLVKSYDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCV RFTPTGLSYASGSEDGTIRIWQTTPANPEENETSSRRVKHSVDEVSKKIEGFHINKEG KTAEKPSDT" ORIGIN 1 taggaactaa attaaaaaat acaaataaag gtcttctcct tcccgtctag atgtagaaat 61 ccctaaaact tgctactgtt ttgcatacgg ggcttgtaca aataaaaacc acccaattcc 121 tacgctttcc tctacaaatt gtcccctttt ttttttaact tttatacttt caattcatct 181 ttggttctgt agaattccca ggaatcagca ttccactggt ttaggataga tggagaagaa 241 gaaggtgacg attccacaag tgtgtcatgg ccattcaaga cctgttgttg atttgttcta 301 cagtccaatt actcctgacg gtttcttcct catcagcgct agcaaagatt cgcatccaat 361 gttgagaaat ggggaaactg gagactggat tggtacattt gaagggcata aaggtgcagt 421 ttggagttct tgtctggata acaatgcatt acgtgctgca tctgcttctg ccgatttttc 481 agccaaactt tgggatgcgt taacagggga tgtgctgcat tcttttgagc acaagcatat 541 tgtccgagca tgcgccttct cagaggatac aaaatcgttg ctcacaggag ggtttgagaa 601 aattcttcgt gtttttgaca tgaatcggtt ggatgcacct cctacagaag ttgataaatc 661 tcctggttct atcagaaccc tcacatggct tcacagtgat caaacaatat taagttcatg 721 tactgatatt ggcggtgtaa ggttatggga tgtgaggagt gggaaaattg tgcaaacgtt 781 agaaactaag tctcctgtca ccagtgctga agtgagccaa gatggacggt atataacaac 841 tgctgatggg tcaactgtta aattctggga cgctaaccat tttggactag tgaagagtta 901 cgacatgccc tgcaatattg aatctgcatc gttggagcca aagtctggtg aaaaatttgt 961 tgctggtgga gaggatatgt gggtccgagt gtttgatttc tacactggcg aagagattgg 1021 atgcaacaag ggacatcacg gtccagtaca ctgcgttagg tttactccca ctggtttatc 1081 ctatgcctcg ggatctgaag acgggacaat cagaatctgg caaacaacac cagcaaatcc 1141 cgaagagaac gaaactagct cgaggagagt gaagcatagc gtggatgaag tttcaaagaa 1201 gattgaaggc tttcacatca acaaagaagg aaaaaccgca gagaaaccat ctgatactta 1261 agctaaactg agcgtacaaa aagcctctat atgtcttagt tcatgatttg ctatgttttg 1321 tttccagact gaatgattat acagagaaaa caaacaaaga tctccctctc ttcttttgaa 1381 tcaaaacatg ggtgttaaaa tttaatagtt ttctttcaag tgtctttttc aatattgaac 1441 taaatttagg gacgaatttg tgatttatga ttatttgact ttagattggg cttg //