Dbfetch
LOCUS NM_176758 3413 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster beadex, transcript variant C (Bx), mRNA. ACCESSION NM_176758 VERSION NM_176758.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3413) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3413) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3413) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3413) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3413) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3413) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3413) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3413) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3413) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3413) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3413) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3413) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3413) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3413) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3413) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3413) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3413) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3413) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3413) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3413) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3413) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3413) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3413) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_176758.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3413 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3413 /gene="Bx" /locus_tag="Dmel_CG44425" /old_locus_tag="Dmel_CG15048" /old_locus_tag="Dmel_CG6500" /gene_synonym="Bd; beadex/dLMO; bx; CG10548; CG15048; CG44425; CG6500; dlmo; dLmo; dLMO; Dlmo; DLMO; dLmo (Bx); dLMO(Beadex); Dmel\CG44425; dttg; fliH; hdp; hdp-a; hld; Lmo; LMO; Ptd; Rho" /note="Beadex" /map="17C1-17C4" /db_xref="FLYBASE:FBgn0265598" /db_xref="GeneID:32846" CDS 599..1540 /gene="Bx" /locus_tag="Dmel_CG44425" /old_locus_tag="Dmel_CG15048" /old_locus_tag="Dmel_CG6500" /gene_synonym="Bd; beadex/dLMO; bx; CG10548; CG15048; CG44425; CG6500; dlmo; dLmo; dLMO; Dlmo; DLMO; dLmo (Bx); dLMO(Beadex); Dmel\CG44425; dttg; fliH; hdp; hdp-a; hld; Lmo; LMO; Ptd; Rho" /note="CG44425 gene product from transcript CG44425-RC; CG44425-PC; Bx-PC; heldup a; flightless-H; beadex; rhombotin; LIM-only; held-up; pointedoid" /codon_start=1 /product="beadex, isoform C" /protein_id="NP_788931.1" /db_xref="FLYBASE:FBpp0309324" /db_xref="GeneID:32846" /db_xref="FLYBASE:FBgn0265598" /translation="MMTMDITKTEPGLVGLSSNQQQQQQQQSQQSNAGMNSGGQNNGP NPNGNGNVVNVVNSGGAGGGNNGNGNVQSIAAAANNNNNNNNNGSQLCAGCGKHIQDR YLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACS KVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFAS MANHPMLKRHVSSLGQGSPTGAAGAQNTAGGLLGGGPGGGNVNGVGMVNGPRTPGDHN NNNNGPQTPTGGGSPFAAAAAAAAAAAHMKNQLGASS" ORIGIN 1 acattcgaaa attcaacttc ggcgctggcg gttgtgagtg cgcgcgtgcg ataaacagaa 61 gaagaagaac aagacgacga cgacgtagcg aaacgcaaaa gttagcgaaa tcataacaaa 121 gtcacggaac actgttcatt ttttttcctg tgtacatgcc acaaaaaggt agaagagaaa 181 caacagcagc aacaacagca acggcagcag caacagctaa acaagtgcga aatatgcaaa 241 tttatgagct aactaattga gtcgagtgtg cgtgcgtgtg tgtggtgcgt gttcgtgtgc 301 gtacgtgtgt gtggcaggtg tttatcaatc tctccctctc ttttctatcg ctctcggtga 361 tcttgcaccc acacacaaaa tcaggaataa caaataacaa ataacgaata gcgcaacaac 421 aattgaataa taacgaccgg accggaccga accgaaccga ccgcaaaagc taaataaata 481 aataaataaa tacacaacat acgcaattac aacagcaaca gtaagagcct tgtgcttcct 541 gagaacaaca aataccacaa caacaaacag caggaacaac aactcaattt ctgcatatat 601 gatgactatg gacattacca aaaccgaacc cggtctcgtc gggctttcct ccaaccaaca 661 gcagcagcag cagcagcagt cgcagcaaag caacgccggc atgaacagcg gtggccagaa 721 caacgggccc aatcccaatg gcaatgggaa cgtggtcaat gtggtcaact ccggcggtgc 781 cggtggcggc aacaatggca acgggaatgt ccagagcatc gccgccgctg ccaacaataa 841 taacaataac aacaacaacg gcagccaatt gtgcgccggc tgcggcaagc acatccagga 901 ccgctatctc ctccgcgccc tggacatgct gtggcacgag gactgcctca agtgcggctg 961 ctgcgactgc cgcctgggcg aggtgggctc cacgctctac accaagggca acctgatgct 1021 ctgcaagcgg gactacttga gattgtttgg caacacgggc tactgcgccg cctgcagcaa 1081 ggtgatccca gccttcgaga tggtgatgcg tgcaaggacc aatgtctatc acttggagtg 1141 cttcgcttgt cagcagtgta accacagatt ctgtgtgggc gaccgtttct acctgtgcga 1201 gaacaagata ctctgcgagt acgactatga ggagcgcctg gtcttcgcat cgatggccaa 1261 tcatccgatg ctcaagcgac acgtctcctc cttgggccag ggctcaccga cgggagcggc 1321 tggggcgcag aataccgctg gtggattgct gggcggcgga cccggtggcg gcaatgtgaa 1381 tggcgtgggc atggtcaacg gaccgcgcac ccctggcgat cacaataaca acaacaatgg 1441 cccacagaca ccgaccggcg gtggctcacc gtttgccgct gctgctgctg ccgccgccgc 1501 cgctgcccat atgaagaatc aactgggcgc gtccagctaa aataaagccc tgggcatggg 1561 tgccgctggg gctgttgtgc cgggatctgg agtcggcgct ggagttggag ttggagttgg 1621 agcggcgagt cagcaattct actcgggctt cgggctgcag catcagcacc agcatcagca 1681 gcatcaccaa cagcagcagc aacagcaaca gctcatggga ttgggcctag gaatgggcgg 1741 cggtggagga gtaggaggag gaggagcagg atccgccggt ggaccaggcg gaggggcagg 1801 aggaggagga ggcgttggca gcatcggaag cggctgcaag cgctaccaaa gaaagtttta 1861 caaccgcaac tgaggaaatc gacgggcgag aaaacgctag cggaaaggat gcagaaatcc 1921 agaatcgata ttcaaatctt cgtttgcttt gactgagttc aagttttata gttttaaagg 1981 cctagtttag ttagcctaca gaaaagtact tgctgaattt gcagacattt ttagatccta 2041 acatttaaga gacaatatgt ttacttagtt ctattcgaga ataaccgccc catttgtttt 2101 taaactagtt ttattttcgt ttccactaca tactgtacat attttccttg taaactgttg 2161 acgtattagc gggatccttt tttttttttt acatactcca tatagatata ttcgtattta 2221 tctatgtata tgcataaata attttatttt cacgctcgaa gcgtgcggtg ccaaaagaaa 2281 ttcaaagcag tgccaaaaag ttaaaaaaaa aaaaaaataa acgaaggact aaactgatga 2341 atgtggaatg aatgacaagg gcggcctggt ggagagaatc ggatttgtgg acctgcgaaa 2401 tcgagagagc taaacatccc caccgatcac tgttcgattt tccatgtgtc cttcgaatcc 2461 gaaggagccg caggatcgta gagtagagtc agatgaagag agatagatga tgaggagcta 2521 gaggagctag agggcaattg gcaaaagtga actttgatgt gtaaatattg agacattctg 2581 cacacgactt aagcacacat gatttttgtt ctaattccat tttaagtctg ttggagcaac 2641 gttgttgatt attatttaag tttagtttag tgcgaggcta aagaatgttc tttccacggc 2701 gaacgttgta tagaagtagc tggagctgga tgatttctag atggattgta gatgaggtat 2761 gatggccaga tccacgatga tccagcgcgt tagatgtaaa gcgcctaaga taggtcgatg 2821 taaagttaag gatttgtgtg cgtgcgtgtg tatatctata accaagcgaa ctagttacaa 2881 tatggatgta tttattaatc cttttttttt tttgcaatct aatgtaacac taatcaatat 2941 gcgtaattag cgttcgaaag gagctagcga atatactaag tacgggagaa accaaagtgt 3001 gtgtataagc aacagtctat catctacgag cgataaacaa tactacctat ctatcgaatt 3061 accgaaacta tgttaaatat cgtaataata tctaataatc ggaaataagt aagagcgatt 3121 atccaatatt tttttttttg tattgtattg ttagagagca ggcataaagt taaatcaaaa 3181 atatctaaag tgtaagataa acccgcttag acttatatat acgtgcatat atatacatta 3241 caaaaacaaa ccataatccg agttttggcc ggcaatcagt aataatgaaa gcagccagaa 3301 cgattgcaag tgaaagaaat caaaactaaa gagaaacgag agaaaaaaaa acataaaaac 3361 aaatgcaaat gcaaaaacaa aaggaaacaa taaatgtaat taacaaacat ttg //