Dbfetch
LOCUS NM_164328 3628 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster complexin (cpx), transcript variant G, mRNA. ACCESSION NM_164328 VERSION NM_164328.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3628) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3628) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3628) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3628) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3628) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3628) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3628) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3628) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3628) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3628) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3628) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3628) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3628) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3628) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3628) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3628) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3628) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3628) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3628) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3628) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3628) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3628) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3628) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3628) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_164328.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3628 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3628 /gene="cpx" /locus_tag="Dmel_CG32490" /gene_synonym="BcDNA:GH27718; BcDNA:HL04936; BcDNA:RH26459; BcDNA:RH31085; CG32490; Cpx; CPX; dmCplx; DmCpx; Dmel\CG32490" /note="complexin; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org" /map="82A1-82A3" /db_xref="FLYBASE:FBgn0041605" /db_xref="GeneID:64877" CDS 424..852 /gene="cpx" /locus_tag="Dmel_CG32490" /gene_synonym="BcDNA:GH27718; BcDNA:HL04936; BcDNA:RH26459; BcDNA:RH31085; CG32490; Cpx; CPX; dmCplx; DmCpx; Dmel\CG32490" /note="CG32490 gene product from transcript CG32490-RG; CG32490-PG; cpx-PG; complexin" /codon_start=1 /product="complexin, isoform G" /protein_id="NP_730801.1" /db_xref="FLYBASE:FBpp0078537" /db_xref="GeneID:64877" /db_xref="FLYBASE:FBgn0041605" /translation="MAAFIAKQMVGNQLSAVKGAVGGDGGDDGDDKEKAEEEERERQE AIKEAEDRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTP EELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ" ORIGIN 1 ctgcgttggg gactctcttc gcgtttcggc ggctgttgtt accacaagag ctgctggcta 61 ccagtataac gttttcggca gttaatgtag tttcggtcac cagcagcagc accaccgccc 121 cagagcgaac ttttcggaag cctatctgcc taatgcacgc tcttcacagt ggatttcctt 181 agaacaaaca catttcgcgc agactagtcg gaactttgct cctcatcaac caagtccacg 241 cactcacagg aatcttcaag caaaatctga aaggaatact tgctgaacta aggccagctt 301 accgagcacc caggacccag caaccgggac tcaggagcca gcgcggacac aagtgcatct 361 cttcgagcgg aagcagagga ccacaaccag gcgcagccac gcccctagag cgacagccca 421 aagatggcgg ccttcatagc taagcagatg gttggaaacc aattaagtgc cgttaaaggc 481 gctgtaggag gtgatggagg cgatgatggc gacgacaagg aaaaggcaga ggaggaggag 541 agggagcgtc aggaggccat caaggaggcc gaggaccgcc gaaaggaaaa gcaccggaaa 601 atggaggagg agcgcgagaa gatgaggcaa gacattcgcg ataagtacaa catcaagaag 661 aaggaggaga tcgtggaggc ggccccccaa gaagagccca atcccctgat gcggaaaaag 721 aagacgcccg aggaactcgc cgccgaagcg gagcaggaag agctcgacga ttttacaaaa 781 ctgaaaaatc aaatagaaac gcaagtaaat gagctaaaaa ctcaaataga gggaaaatgt 841 gtcatgcagt gatatgtcag tcaccataat aacagataaa taaatatgat gataaaacac 901 gtgtaatact gataacatag cccataaacg gaaattaatt taactcaact taatattgaa 961 tttgttaata tgagatcagt tcatttacat gggaaccata aatgaattaa aactactgcg 1021 aatctagagc gtaatataac tttacccggc agcagcataa cgccttttaa acactaaatc 1081 tcaaaatcga cgacagctat aattcgaaat gcataatcaa aatccgaacg aggcggtgaa 1141 ctttatgaat tttaaagtag ctaaatcgcg taccaaatca tttaaatccc aactatagtg 1201 aaagccttta ataatattca aatcactttg ctacgataat aatgtaatat actcaaaccc 1261 aatatacaat acataatcgt tgtttagctg ataacataca acaaaaagta acgaaataat 1321 gaatatattg aatcggcacg atgacactcg aatgcaaata gaaaaaagaa taataaaata 1381 acataaaaca aaaataccaa tcctaaaaaa cattaagcca atggtgcgac agaggaggct 1441 accgagtttg tcgagccgtc gaagtacata catatgttgc tgaaatcaca ctggacttga 1501 aatccatcta taagtataga tatacatatt ataaaataaa tcggcgaaca tgttagaatg 1561 gtcattcaaa tacacccgtt gtgtatatat gtaaatttca agaattttac taggagtaat 1621 aatacttgca aacgaattga ctgcaggata cgttaaaatg gctgattctc taaattgttt 1681 ttcataacca agaaaaaatg gttacaaata tatgaaaaaa gattcagtca atttgttttt 1741 caacgtttga ctcaaacatc tttaacagct gttacatttt gtttttttct tatacaaaca 1801 tcatacctac acaacaattg agaatttcga actctttgag acagttaatg atctctctga 1861 ttgatgcttc tgaaataaca acatatgcaa aaacacgaaa caacaacaat atcaactatt 1921 acaacaacat caacaacaat tctaccaatt cttcacaact acgtcttgat ggtcccactt 1981 agacatgttc tctcggtgtt ttataagttt catcaacaac agccagaaca acagcacaag 2041 aaaacgccta cagccagtac aagaacaaca tcaacaacaa catcaactac agaagaatcc 2101 aaatatgtat tataagagat gaacaatact ttccaagcaa acagtagatg aaaacaacaa 2161 gctgcatgaa caacagcatc aactaaatca gatcattgca atttgcaggc cagcattccc 2221 tatcttattt ctgaacattg tgaataaatt cggatgtggt ttaccaaata tgccaaacca 2281 aacaggctca tatatatacc atacatggtc actaatcacc agcaatcaaa tggctatatg 2341 gtgttgcaaa tgctttaaat aatgtacaga tccaataaaa agcaacgaaa tatgcatata 2401 catctgtgca acattcatta gaagtcactt aattaaagag ctaaatatga cattctgtac 2461 tcacaataga aagctaaact tccaaatccc aaaagagagt ttcaagatat cagttagagc 2521 ttcgtgtcac aatgcttctt aaaattctca acatcatgtt tttcataagt cggtgggaca 2581 gcgataaagc aaccaggctt aacgcccttc tctgtcaatc taataaagca atcctctagt 2641 gcccctcgct ccatacagag ttaggaacga tcaaactaat gaatgaatgc cttaacgtgg 2701 ctcaaatgac tagaccatga atagcgaata gttgatgata agaaaagttg attctaccct 2761 aagaaagcaa tttgccagcc cttgctttgt ttccctattg tctgttactg aacctgcacc 2821 cagaaatgta tcttagctat gatcctttta aactcaaaac taacagtcta taaagaaacc 2881 gcttttcaaa tacttataga aaatgtttac ctagattcta ctatatgaat tgcgttttgt 2941 ctcagatatt tatatacgat tgaaggccac tttaattgtt caatatggtg aacgaactaa 3001 cacataatta aaaccaacac aacttattga agcatactat tcaatcttaa ccaagtttta 3061 acgttatcat aaatgtttaa agtgttaaat ggttcagccg ctttcgtttt catttataat 3121 ttgttaatac tatgttaacg tttaaaatat agtattgaaa atgtaatcat atgtatatca 3181 gaaagttcac gaaaccacag attattaaat attaatatct atctatatat atgtatatat 3241 atatacatgt atatatacat atatgtatat atgtatatat gtatatatgt atatatgtat 3301 atatgtatat atgtatatat atatatacat atacatatat acatatgtat atttatatat 3361 atgtgtgaat atgtgtaact taataggaaa atgaatttaa tagagaaaca acagacaaaa 3421 attataaata atgttgaaaa gaataccatt caagtcatta ttagatgtga aagacgttct 3481 atacccagca aaacagaaac aaaaacataa gaaaatcgtt aatagttgat taattatatt 3541 gttactttga acatttaact aaaacgaacg aaaaacaaaa gatgctataa taaaaaagta 3601 tatatgttta aatatatatg agaaacac //