Dbfetch
LOCUS NM_140662 3145 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster mutagen-sensitive 302 (mus302), transcript variant A, mRNA. ACCESSION NM_140662 VERSION NM_140662.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3145) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3145) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3145) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3145) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3145) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3145) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3145) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3145) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3145) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3145) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3145) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3145) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3145) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3145) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_140662.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3145 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3145 /gene="mus302" /locus_tag="Dmel_CG13025" /gene_synonym="CG13025; Dmel\CG13025; mus(3)302" /note="mutagen-sensitive 302" /map="73C4-73C4" /db_xref="FLYBASE:FBgn0287696" /db_xref="GeneID:39874" CDS 256..2082 /gene="mus302" /locus_tag="Dmel_CG13025" /gene_synonym="CG13025; Dmel\CG13025; mus(3)302" /note="CG13025 gene product from transcript CG13025-RA; CG13025-PA; mus302-PA" /codon_start=1 /product="mutagen-sensitive 302, isoform A" /protein_id="NP_648919.1" /db_xref="FLYBASE:FBpp0075105" /db_xref="GeneID:39874" /db_xref="FLYBASE:FBgn0287696" /translation="MENETEALDPEVYADETSTDDSSGDDEVILNPVEGLQPAVEIDE QRDQPGENAEPEQPRVPPLILVDPPHLPSPPRNSRRNQGEEQEVISLETPSPPKKRKR LSAAADKSLKKSPEGKPIVVDDEDDGMTCPICLDSWEMSGEHRLVSLRCGHLFGESCI RRWLNESHRQSSVKVCPQCKTKATFRDIRHLYAKRIQMLDTDIREQLEAERRRTHTLT TELATAKLANTLTTEKLILLQKDYERLKELVRAGGGRGAFGGDASGQKSIQQLATYRL YMEKNFEITRDPGCRVLLYSAKHSMLVASQKSAQNLFPGYGVRFIDPPTFKPLQFLHT SALLIRDIAFSDSQHLLTVASRELKIKIFDIRTRLCSSMFTAHDKMLWSCALDRNERE HFLYGGDLRGGVYIYDLRFPENILCEFQAEVNLSPVIHIAPVQPNKIFTSGGFLVCQL TALTFYEYAAASDTAVPTRLNVEGPFLSMQYDAVQDTVLISARSNPNFPQSRFILGRM DKIDGTPVLKVKATIYGSKATPVMTRPTQLAVEDNTLVVGYLQDSKQLMMHDVRREER VQTMPVNEVIYDICPVATQAGSYLAALTDNKCRVYKVNSSMR" ORIGIN 1 atctcgatct tgaccatccc tagcttgaaa tttagcgtcc tattgcagga aagtcgcgaa 61 atagataaaa taataacaag aactttcatg ttttccaaga ggaaaacttg attgagacca 121 tatataggtg aaacggacag cgaaggtttc gcaaaaggcg acagcgccgt ggatccggaa 181 atatactcat cgggcagcag ggaatgcgat cagtctgaag cgagaaagcg gaattcagac 241 atcctgctgc aaggaatgga gaatgaaacc gaagctcttg atccggaagt ttatgccgat 301 gagacctcta cagatgatag ctctggtgat gatgaggtaa tcctcaatcc agttgaaggt 361 ctgcagccgg cggttgagat tgatgaacaa cgtgaccagc ctggtgagaa cgcggaaccc 421 gagcaaccga gagttccgcc tttaattctg gtagatcctc cgcatttgcc cagtcccccg 481 agaaattccc gccgcaatca aggcgaagag caggaggtga tctcattaga aacgccatca 541 ccgcccaaga aacgtaaacg tctctccgct gctgccgata aaagccttaa aaagtcgccc 601 gagggcaaac caatagttgt agatgacgag gacgatggca tgacctgtcc catttgtctg 661 gattcctggg agatgagtgg cgagcatcga ctggtctcgc tgcgatgtgg tcacctcttt 721 ggggaaagct gcattcggcg gtggttaaac gaaagccatc gccaatcttc tgtgaaggtg 781 tgcccgcagt gcaagacgaa ggccacattt agagatatcc gtcatctgta tgcgaagcgc 841 attcagatgc tggacacgga tattagggag cagctggagg cggagcggcg gcgtacacat 901 actctaacaa cagagctggc taccgcgaag ctggctaaca cactcaccac tgagaagctg 961 attctcctgc agaaggacta cgaacggctt aaggagctgg tgagggcagg tggtggtcgg 1021 ggagccttcg gaggcgatgc atccggccag aagagcattc aacaactagc cacctaccga 1081 ttgtacatgg agaagaactt cgagataact cgagatcccg gctgccgtgt attgctctat 1141 tccgccaagc actccatgct ggtggcctcg caaaagagtg cccaaaacct gttccccggc 1201 tacggcgtac gctttattga tccacctacc ttcaagcccc tgcaattcct gcacacctcg 1261 gcactcctaa tccgggacat tgcttttagt gactcacagc acttgctcac tgtggccagt 1321 cgggaactaa agatcaagat attcgacata agaacacggc tttgctcgtc tatgttcacc 1381 gctcatgaca agatgctgtg gtcttgcgcc ctggatcgca acgagcgcga acactttcta 1441 tacggcggag atctgcgagg tggagtttat atctacgact tgcggtttcc cgagaacatt 1501 ctctgcgagt tccaagccga agtgaactta agtcctgtga tacacatagc tcctgtgcaa 1561 cccaataaga tttttaccag cggtggcttc ctggtctgcc aacttacggc ccttacattc 1621 tacgagtacg ctgcggccag tgatacggct gtgcccactc ggctaaatgt ggagggaccc 1681 tttctgtcca tgcaatacga tgccgtgcag gacacggtgc tcatatcggc acgatccaat 1741 ccgaatttcc cccagtctcg cttcatactt ggtcgaatgg acaagattga cggaacgccg 1801 gtgctgaagg tcaaggccac catatatgga tcgaaggcca caccggttat gacgcgaccg 1861 acccaactgg ccgtcgagga taatacctta gtggttggct atctccagga tagtaagcag 1921 ctgatgatgc atgatgtgcg gcgggaggag cgagtgcaaa caatgccggt caacgaggtg 1981 atctacgaca tctgccctgt ggctacccag gccggatcct atttggccgc cctcaccgac 2041 aataagtgta gagtttacaa agtgaacagt tccatgcgat gatatatgta tgtgtgcatt 2101 agttttccgt gaaaataacc aaaaaaaatt ttcttttagc taatttctgt gaaatatgtg 2161 actactgata taaacgagct tttaagctaa gttattagtt ataaattttt cattatttcc 2221 gtttattaaa catttgtcaa ccttaaggtt cgcgtacaag attaatctga acataattct 2281 atattgtgtg tactccatgt ttttgttttt gatttttgat ttcaatttgt gaatgctcaa 2341 agtctgttgt ggataagtct tgtataaagc aatagaaaat gttggttcga ttaataatat 2401 acatataaag ctatacaaaa atgttttatc catacaatat ccgatttata tatgtatatg 2461 cgtaattata gatactccta aatgaaatgt ggaaatgaac gaatgtttaa atagatgtct 2521 aaattcattc ctgacagtct cgaaatgttt gcaacacttc aaacttttgg aaaagtcctt 2581 cgatctcaga cttgcaacga gtctgacatt tccaagccca agtaaatgtt tatgaattcg 2641 gttttcttct ctcttgagtc ttgagttttg taaaattcta tcaaaaaatg ttcgtcgttg 2701 gtcgtttgct ggttttttct ttttttttcg taaatcaaaa acctctgtgg catttactcc 2761 tataaagttg tatatggttt atagtattgt atatagatta gtgtgttgaa tagttgaaag 2821 acgcagatct atacttttta agtataattt tgtatatttt gtgatgtttt atttgtgttt 2881 ttgctgtttg tgtctgtgtg tttatgtgtt cgttaatgtt aagattagag aatacgtact 2941 cgtatgaaga aacgtatgga gtcagcataa cttaagactt tcaacttaaa ctttaagaga 3001 actaaatatc cgttacacat atatttatat atatataaac attagattaa cttatgctaa 3061 actaaacacg aaacgaagtc gggaagtatt aagctttgat taggtaatcg gttcgtatta 3121 aatttaaaga aatcgattat tactt //