Dbfetch
LOCUS NM_135364 2501 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster mitoshell (mtsh), transcript variant D, mRNA. ACCESSION NM_135364 VERSION NM_135364.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2501) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2501) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2501) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2501) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2501) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2501) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2501) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2501) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2501) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2501) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2501) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2501) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2501) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2501) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2501) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2501) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2501) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2501) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jan 16, 2013 this sequence version replaced NM_135364.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2501 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2501 /gene="mtsh" /locus_tag="Dmel_CG7795" /gene_synonym="CG7795; Dmel\CG7795" /note="mitoshell" /map="29A4-29A4" /db_xref="FLYBASE:FBgn0262598" /db_xref="GeneID:34141" CDS 233..2182 /gene="mtsh" /locus_tag="Dmel_CG7795" /gene_synonym="CG7795; Dmel\CG7795" /note="CG7795 gene product from transcript CG7795-RD; CG7795-PD; mtsh-PD" /codon_start=1 /product="mitoshell, isoform D" /protein_id="NP_609208.2" /db_xref="FLYBASE:FBpp0290393" /db_xref="GeneID:34141" /db_xref="FLYBASE:FBgn0262598" /translation="MNIPIYQVPSVTMQSLHQQSLYQQTYLDRNRMVTDVFVQEHVSQ SSWSMAGSSAVFIPGPIITGSAHGHCHHTATVSTVSPQLATFMPFPGMQYYAASSATM NAYGHNQMYSTRASASVGFYLPQYHASCSHEQPKKTFCAAQTQTQQTAKTSCDVGTQV DLDAEELRSEARKPRPESVVPEESSISSLESGAGDGFRVQKKLRNSEVKLLDQRLHDI TRVSLHGSEIAERLANAHRNRPCFKKIDTLCARLKQDLLRPDGVLPNINSQGIAWAVK DFIFVFTRIVNAWVILKGYVYNTPDALNKIKDELPSGFMASFDSWQISTLSIVKMIVK SFVNLDELLQKQKNSFSGKDGAPINQSNSISLRSFIDSNDSSGLAQKYLGMTTGHGPS AFSTPNNQIRNNAASKGQEPTSSALYKPKCALNLNYLYTMIEDSEETQRHVDANGTYL KTGTYQPLQKESMQLEMPPAKPNDHYVERNANQQALPSQEIPNAPTPKSSPQSDRPRD VRSYTNPFSAIGKEVTRQLYEFSDRVMELKNLERFFKKQFTRNYYPNFYQHCQDDFID VRAIILRCENSSYHHIYQAIHDLRRIIFTVRCYLQMYTDENLLYYIDLYERSVNDMLS KPPHYPNQFDHIMGRPGEKLFNYEI" ORIGIN 1 ccttttctgt tctgaaaccc tagggagcag acggttctta cttttagcca aatcttcgtc 61 gtcaggggat accaacacca gtccgtgtag ttgccgcagt gactcgacaa tccacacgtg 121 tgatttggat aggataacct taaaatcgag atacgaattc tgagcatttc tgttgtttgc 181 tttcgccagt ttttttttat tcagttttag aacccaactg ccaggcagga tcatgaacat 241 ccccatctac caagtgccct cggtgaccat gcagtcgctg caccagcaat ctttgtacca 301 gcaaacctat ttggatcgca atcgcatggt caccgatgta tttgtgcagg aacacgtctc 361 gcagagctct tggtcaatgg ccggttcatc ggctgttttt ataccaggcc ccattataac 421 tggtagtgcc catggacact gccatcatac cgcgacagtt tcgactgtaa gtcctcaatt 481 agcgaccttt atgccttttc cgggcatgca gtactatgcg gcaagctcag ccacgatgaa 541 cgcctatggc cataatcaga tgtattctac tcgtgcttcg gcctccgtcg gcttctattt 601 gccacagtac catgcaagct gcagtcatga acagccgaaa aagacgttct gtgcggctca 661 aacgcagacc cagcagacgg ctaagaccag ttgcgatgtg ggcacccagg tggatttgga 721 tgctgaagaa ttgcgctcgg aggctaggaa gccaagacca gaaagtgttg ttcctgaaga 781 atcgagcatt agttcattgg aaagcggcgc aggcgatggt ttccgagtgc aaaaaaagct 841 gcgcaactcg gaggtaaagc tgctggacca gcgtctccat gatattacca gagtttcact 901 tcatggcagt gagatagccg aacgtctggc caatgcccat cgcaatcgtc cgtgcttcaa 961 gaagatcgat acactgtgcg cccgcctgaa gcaggatctg ctgcgtccgg atggcgtgct 1021 gccaaatata aactcacagg gcattgcttg ggccgttaag gatttcatat tcgtctttac 1081 gcgcattgtg aatgcctggg tcatactgaa gggctacgtg tataatactc ccgatgcttt 1141 gaacaagatt aaagatgagc tgccgtcggg ctttatggct tcctttgatt cttggcagat 1201 ctcaaccctg tccatcgtaa agatgattgt aaaatccttt gtaaatctgg atgagctgct 1261 gcagaagcag aagaacagct tttccggaaa agatggggct cccattaacc aaagcaatag 1321 catctctcta agaagtttta tagatagcaa cgatagcagc ggcttggcac agaagtacct 1381 gggaatgacc actggacatg gacccagtgc ctttagtaca cctaataacc aaatacgtaa 1441 taatgcagcc tcaaaaggcc aagaacccac ttcatctgca ctttacaaac cgaaatgtgc 1501 attaaatcta aactatctgt acaccatgat agaggattcg gaggaaaccc aacgccatgt 1561 agatgccaat ggtacttatc tgaaaaccgg aacgtatcaa ccactgcaaa aggagtcgat 1621 gcaactggag atgccgccag ccaagccaaa tgaccattat gtggagcgga atgctaacca 1681 acaggctttg ccatctcaag agattcctaa cgctccaact ccgaaatcat ctccacagtc 1741 ggatcgtccg cgagatgtga ggtcgtacac gaatccattt agcgcgatcg gaaaagaggt 1801 tacccggcag ctgtacgagt tcagtgaccg tgtcatggag ctaaaaaact tggagcgctt 1861 ctttaagaag cagttcactc gcaactatta tccaaatttc tatcagcatt gccaggatga 1921 ttttatagac gtgcgtgcca ttattttgcg gtgcgagaat tcctcatacc atcacattta 1981 tcaggctatc catgatctgc gccggatcat ctttacggtg cgctgttatc tgcagatgta 2041 cacggacgag aacctcctct actacattga tctctacgag cgctctgtga acgacatgct 2101 ttccaagccg ccacattatc ccaaccagtt tgatcacatc atgggcaggc caggcgaaaa 2161 gctcttcaac tatgaaatct aagtgaaaaa gtattgacgg ttgagattat caactgaaat 2221 ttaaacgatt tatgccactt atttagcatt tacacgcgtg ggttgagtag attcattaat 2281 tttcgaaatc agtgaattga ggcaaatttt gacaaatcca tgctttaatg ttaattgaca 2341 ttaaatcaga ttcattaata ccataactcc cgttctttgg tcgcaacatt tattcagcat 2401 gtaattaata caggtcttat attttataat gtagtattta taacataacg ttttgttttt 2461 tgtacacatt gaacggattc aactgctttg ttaaattcac t //