Dbfetch
LOCUS NM_129094 978 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana RING/U-box superfamily protein (AT2G35420), partial mRNA. ACCESSION NM_129094 VERSION NM_129094.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 978) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 978) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 978) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 978) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Feb 17, 2004 this sequence version replaced NM_129094.1. COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..978 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..>978 /locus_tag="AT2G35420" /gene_synonym="T32F12.20; T32F12_20" /db_xref="Araport:AT2G35420" /db_xref="GeneID:818108" /db_xref="TAIR:AT2G35420" CDS 214..978 /locus_tag="AT2G35420" /gene_synonym="T32F12.20; T32F12_20" /inference="Similar to RNA sequence, EST:INSD:EG521180.1,INSD:BX834768.1,INSD:EH872458.1, INSD:BP791046.1,INSD:EG521197.1,INSD:AV790280.1, INSD:EG521198.1,INSD:EG521196.1,INSD:AA651499.1, INSD:AV804963.1,INSD:BP783833.1,INSD:BP667985.1, INSD:BP626897.1,INSD:EL315019.1,INSD:BP786451.1, INSD:BX834133.1,INSD:BP781008.1,INSD:EG521177.1, INSD:AV788866.1,INSD:AV815827.1,INSD:BP660044.1, INSD:CB254894.1" /inference="similar to RNA sequence, mRNA:INSD:BT012632.1" /note="RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G17920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="NP_181085.2" /db_xref="Araport:AT2G35420" /db_xref="GeneID:818108" /db_xref="TAIR:AT2G35420" /translation="MSSTTSIDSIPATAVFPSVSMPVTVVLTGVLLFVIFAGFFSLFL WQFLLNRLFTTWNLQRTPYGDLIHVATPPENTGLDPFIIRSFPVFHYSSATKKNHGTE CAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPGMIGSGRLES FHNTVTITIQDINHDEENPPTAGSSKRLIEASAWRFSRSHSTGHFMVKTTDANVKSKR RHYQTGSCVSFDELTRYEGAGWQWLGDSSHISRIEV" ORIGIN 1 gattttaact gtcacaaaag actcgctcaa aatggtaagc aaagccactt ctgtctctca 61 gacatagcca ctttattctc ctcatttctc tctattaact tgaacaataa tactcctttt 121 ctcacaagga tttgtaagaa caacctttct tatatcccaa gcaatctacg aaactggtag 181 aatctggggg tttctctaat catcaacctt caaatgtcgt caacaacatc aatagattca 241 ataccagcta ctgctgtttt ccctagtgtt tccatgcctg tcaccgtagt tttgaccggt 301 gttcttctct ttgtaatttt cgccggattc ttctctcttt tcttatggca gtttcttctg 361 aatcgattat ttactacttg gaaccttcaa cgaacacctt acggtgacct aatccatgtg 421 gccactccgc ctgaaaatac tggcctcgac ccgtttatca tccggtcctt tcctgtattc 481 cactattcat ctgcaactaa gaaaaatcat gggacggaat gcgctatttg cttgtcagag 541 ttttcagatg aagatacagt taggctcata acggtttgtc gtcatccctt tcattcaaat 601 tgcattgatc tttggtttga gttacacaag acttgtcctg tttgccggtg tgagttagat 661 cctggcatga ttggatctgg aaggcttgaa tcattccaca acacagtcac aattactatt 721 caggacataa accatgatga ggaaaatcct ccaaccgctg gttcaagcaa aaggctaata 781 gaagcctcgg cttggcgatt ctcgaggtca cattctactg gacatttcat ggttaagact 841 acggatgcta atgtgaagtc caaaagaagg cattaccaaa caggaagctg tgtctcgttc 901 gacgaactta ctcggtatga aggagcagga tggcaatggc ttggtgattc atcacacatt 961 agcaggattg aagtatag //