Dbfetch
LOCUS NM_125157 2236 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana uncharacterized protein (XBAT32), mRNA. ACCESSION NM_125157 VERSION NM_125157.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2236) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 2236) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2236) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2236) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Feb 17, 2004 this sequence version replaced NM_125157.2. FEATURES Location/Qualifiers source 1..2236 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..2236 /gene="XBAT32" /locus_tag="AT5G57740" /gene_synonym="MRI1.10; MRI1_10; XB3 ortholog 2 in Arabidopsis thaliana" /note="Encodes a RING-type E3 ligase XBAT32. Mediates the proteasomal degradation of the ethylene biosynthetic enzyme, 1-aminocyclopropane-1-carboxylate synthase 7." /db_xref="Araport:AT5G57740" /db_xref="GeneID:835882" /db_xref="TAIR:AT5G57740" CDS 506..2032 /gene="XBAT32" /locus_tag="AT5G57740" /gene_synonym="MRI1.10; MRI1_10; XB3 ortholog 2 in Arabidopsis thaliana" /inference="Similar to RNA sequence, EST:INSD:DR271663.1,INSD:ES202490.1,INSD:AV543524.1, INSD:AV546899.1,INSD:EH812745.1,INSD:AU227012.1, INSD:DR271662.1,INSD:EL140124.1,INSD:DR271661.1, INSD:DR379288.1,INSD:BP585776.1,INSD:ES193583.1, INSD:BP572935.1,INSD:BP572681.1,INSD:EH980854.1, INSD:AU236180.1,INSD:ES002572.1,INSD:BP563608.1" /inference="similar to RNA sequence, mRNA:INSD:BX832696.1,INSD:BT012272.1,INSD:BT011688.1" /note="XB3 ortholog 2 in Arabidopsis thaliana (XBAT32); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="uncharacterized protein" /protein_id="NP_200582.3" /db_xref="GeneID:835882" /db_xref="TAIR:AT5G57740" /db_xref="Araport:AT5G57740" /translation="MRFLSLVGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLAR YSTFGVRNSPLHYSAAQGHHEIVSLLVESGVDINLRNYRGQTALMQACQHGHWEVVLI LILFGANIHRSDYLNGGTALHLAALNGHPRCIRILLSEYIPSVPNCWSLLKNKKTSVA GFDSSVLHEVINRAADGGITPLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLI GAGSTALHYASCGGNTQCCQLLISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPT TEQPQLHLPNVPSPFLCLPLMSIVNIAQECGWRENDCLTPCRDPCAVCLERKCTVAAD GCAHEFCTNCALYLSTTSITSSKTSNVTPGSVPCPLCRNGIVSFTKLPHTTATTRTST SSRTSISLSFCTCSSDVLDTALLTNPHYSCKPVVSRTGSRTPQSARSSAFRSLSCRRF PPSLCLGGSDVDEPRSRLIGGSYSRSGVGFRRSTSQVEGKRSWFSALNHCVTTGGSAC " ORIGIN 1 aaagtaatca ccaatttgtt attattgttt gttattttcc ttaatcaatt gaccaaaaaa 61 aaaatcccac aacttaattt caccattctt tttgatgttc tctgtattac aattgtcaga 121 gaagttttct ggatgatctt tcctctaaag tttaaagctt tttttggtca attcttttaa 181 agttttgatt tttttttggt taattcttta aagtttcttt ctttcttaaa gagggatcat 241 tatgatgatg atgatgatga tctgatctgt acataagaga attaaagaac accaacaaca 301 acaaaaacag aggaagaaaa taaaaaccaa atttttcttg ttgcaatcat ttgaaattaa 361 attcaattct tcgattcttc cgagctggtt ctcgaattgg gtttgctgca aattgtgaat 421 ccaataaaat ttgttcgtgt tgttgtgttg atggtgattt gttagggttg atccgatcaa 481 aatttcaatt ttgtatcgta aaacgatgag gtttctaagc ctcgtcggaa actcattcgg 541 ttgttctgcg tccggcgaac gcttagtatc agcggccaga gacggtgatt tacaggaagc 601 taaagctctc ttagattaca atccaagact cgctcgttac tctacttttg gcgttcgtaa 661 ctctcctctt cattactccg ccgctcaagg ccaccacgag atagtttctc tgttggtgga 721 atcaggagtt gatattaatc tccggaacta ccgtggacag acggctttga tgcaagcttg 781 tcaacatggt cattgggagg ttgttttgat tctgattctt tttggtgcta atattcacag 841 atcagattac ttaaatggtg gtactgcttt acaccttgcg gctttaaatg gtcaccctcg 901 gtgtatcagg atcttgcttt cggagtatat accaagtgtt cctaattgct ggagcctttt 961 aaagaataag aaaacttcag ttgctggatt cgattctagt gttcttcacg aagtgatcaa 1021 cagagcagca gatggtggaa tcacacctct tcatgtggcg gctttgaacg gacatataga 1081 gacggtgcag ttactcttgg atttgggagc ttcggttact caggtcactg tggaagatgg 1141 aactactata gatcttatag gtgctgggag tacagctctc cattatgctt catgtggtgg 1201 aaacacgcag tgttgccagc ttttgatcag taagggtgct tgtttagctg ccgtaaactc 1261 caacggatgg acaccaatga tggtagctcg ttcatggcac cgaaactggc tggaagaaat 1321 cctgaaccca acaacagaac aaccacaact ccatttgcca aatgtcccct ctcctttcct 1381 ctgccttcct ttaatgagca ttgtcaatat tgctcaagaa tgcggctggc gagaaaacga 1441 ttgtctgact ccatgtcgtg acccttgtgc cgtttgtttg gaaagaaaat gcactgtggc 1501 agcagatgga tgtgctcatg agttctgcac aaactgtgca ttatacctaa gcaccacaag 1561 cataacatcg tcaaagacct caaacgtcac accaggctct gtcccgtgtc ctctctgtcg 1621 caatggcatt gtatctttca ccaaacttcc ccatacaacg gcaacaacaa gaacatcaac 1681 atcatcaaga acaagcatct ccttgtcctt ctgcacttgc tcctctgatg tcttagacac 1741 agctctccta actaaccctc actacagttg taaaccggtt gtgtcaagaa cgggttctcg 1801 aactccacaa tccgctagat catcagcgtt tcggtctctt agctgccgcc ggtttcctcc 1861 aagtctctgc cttggtggct cagatgttga tgaacctcga agccggttaa ttggtggatc 1921 atattcaaga tccggtgtag gattcaggcg atcaacgtcg caggttgaag ggaaacgttc 1981 ttggttttct gcacttaacc attgtgttac aaccggtgga agtgcttgct aactcaaact 2041 caatcctctt ttttttcacc ttttttataa aatttttgat cccagttttt ttgggattaa 2101 aaatgtgcta attgattctg tgaatggtgt ggtgattatt cattttgtaa taagtgaaaa 2161 tgttgtaata caaataatta atttggcctt gccattacat tgaaatggtg tgtatataaa 2221 attatgtttg agagtg //