Dbfetch
LOCUS NM_119429 2609 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana ENTH/VHS/GAT family protein (AT4G32760), mRNA. ACCESSION NM_119429 VERSION NM_119429.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2609) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 2609) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2609) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2609) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Apr 24, 2008 this sequence version replaced NM_119429.2. FEATURES Location/Qualifiers source 1..2609 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..2609 /locus_tag="AT4G32760" /gene_synonym="F4D11.40; F4D11_40" /db_xref="Araport:AT4G32760" /db_xref="GeneID:829412" /db_xref="TAIR:AT4G32760" CDS 239..2266 /locus_tag="AT4G32760" /gene_synonym="F4D11.40; F4D11_40" /inference="Similar to RNA sequence, EST:INSD:BP590941.1,INSD:EL310033.1,INSD:DR359534.1, INSD:EL148224.1,INSD:BP602957.1,INSD:EL147703.1, INSD:BP564796.1,INSD:CB254724.1,INSD:EH806102.1, INSD:Z33951.1,INSD:EL113591.1,INSD:EH970954.1, INSD:BP863812.1,INSD:DR354558.1,INSD:DR359526.1, INSD:BP800406.1,INSD:BP778722.1,INSD:DR359531.1, INSD:BX834401.1,INSD:DR359528.1,INSD:AV561614.1, INSD:ES037671.1,INSD:BP588945.1,INSD:EH959127.1, INSD:CB257414.1,INSD:BP592437.1,INSD:AV791035.1, INSD:BP798350.1,INSD:BP618995.1,INSD:BP614668.1, INSD:CK117706.1,INSD:BP586252.1,INSD:DR229044.1, INSD:ES165091.1,INSD:BE521905.1,INSD:BP615122.1, INSD:EH940067.1,INSD:DR359532.1,INSD:AV783653.1, INSD:EL138393.1,INSD:AI995397.1,INSD:BP793407.1, INSD:EL977347.1,INSD:AV532922.1,INSD:EL180312.1, INSD:BP566721.1,INSD:AV521095.1,INSD:ES158088.1, INSD:ES179838.1,INSD:BP568497.1,INSD:CB257383.1, INSD:ES180878.1,INSD:EL034349.1,INSD:DR359533.1, INSD:AV522893.1,INSD:DR380778.1,INSD:ES037790.1, INSD:EH893911.1,INSD:BP793747.1,INSD:BP574472.1, INSD:BP621414.1,INSD:EH986238.1,INSD:BP605180.1, INSD:AV528435.1,INSD:ES208368.1,INSD:DR359530.1, INSD:BP777220.1,INSD:BP567267.1,INSD:EL082483.1, INSD:EL986043.1,INSD:EH819268.1,INSD:BP560886.2, INSD:DR359529.1,INSD:EH962447.1,INSD:BP617659.1, INSD:DR359527.1,INSD:BP590125.1,INSD:EL001114.1, INSD:EL311090.1,INSD:BP789517.1,INSD:BE524825.1, INSD:ES187077.1,INSD:BP798037.1,INSD:ES189147.1, INSD:EL013491.1,INSD:BP580217.1,INSD:ES108684.1, INSD:AV539631.1,INSD:BP594226.1,INSD:BP589676.1, INSD:EL286101.1,INSD:BP810671.1,INSD:BP596431.1, INSD:EH807223.1,INSD:BP581561.1,INSD:DR359535.1, INSD:EL146747.1,INSD:EH973719.1" /inference="Similar to RNA sequence, mRNA:INSD:BT000033.1,INSD:AY120724.1" /note="ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT3G08790.1); Has 20336 Blast hits to 14766 proteins in 697 species: Archae - 4; Bacteria - 772; Metazoa - 8080; Fungi - 4287; Plants - 2535; Viruses - 64; Other Eukaryotes - 4594 (source: NCBI BLink)." /codon_start=1 /product="ENTH/VHS/GAT family protein" /protein_id="NP_195002.2" /db_xref="GeneID:829412" /db_xref="TAIR:AT4G32760" /db_xref="Araport:AT4G32760" /translation="MVNAMVERATSEMLIGPDWAMNLEICDMLNSDPAQAKDVVKGIK KRIGSRNPKAQLLALTLLETIVKNCGDMVHMHVAEKGVIHEMVRIVKKKPDFHVKEKI LVLIDTWQEAFGGPRARYPQYYAGYQELLRAGAVFPQRSERSAPVFTPPQTQPLTSYP PNLRNAGPGNDVPEPSAEPEFPTLSLSEIQNAKGIMDVLAEMLSALEPGNKEDLKQEV MVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLTNYEAIASGLPGTSSQ IEKPKSETGKSLVDVDGPLIDTGDSSNQANGATSSSGNGVLNQLALPAPPVTNGSANS KIDLLSGDDLALVPVGPPQPASPVASDQNALALIDMFSDNTNNPSPATAPSGNPAQNI PLNPQGHQQPNSQAGEAGLQQSNGFAPQVGYSQFEQPSYGQGVSSPWSSQPAQQPVQP SYGAQDSTAFPPPPWEAQLQDYSPSAESGSPFSPGMHPTQTAFTHAQPVNNNNPYPQI PQTGPPVNNNSPYAQMPQTGQAVANISPYPQIPQNGVYMPNQPNQALGSGYQPQQQQQ QQMMMAQYYAQQQQLQQQQQQQAYGNQMGGYGYGYNQQQQGSSPYLDQQMYGLSMRDQ TSHQVASSSSTTSYLPPMKPKNKPEDKLFGDLVDISKFKPTKPTSGRAGTM" ORIGIN 1 aaacaaattc tgaaaattaa caattagaga aaaagaaaag aaaaggaaaa aaaaaagatt 61 tctagtagaa agagagaagg gcgtgaattc ctgagcgaga gattcttcgc cggagtaatc 121 tctttgcgtg atcttaccgg ctgcttaatt cgtcttcgcc tgattcgttg gtttcaaaat 181 tcgtctctct ctttcaatcg gaggttaatt gtttttctgt ttgggggtca aagcgaagat 241 ggtgaacgct atggtggaga gagcgacgag cgagatgctg atcgggcctg attgggctat 301 gaacctcgag atctgtgata tgctcaatag cgatccagcg caagcaaaag atgttgtgaa 361 aggcattaaa aaacggattg gtagcaggaa tccaaaagct cagcttcttg ccttaactct 421 gcttgagaca atagtgaaga actgtggtga catggttcat atgcatgtgg ctgagaaagg 481 tgttattcat gagatggtcc ggatagttaa gaagaagccg gacttccatg tcaaagagaa 541 gattctggtc cttatcgata catggcaaga ggcctttggt ggccctaggg caagatatcc 601 acaatactat gcaggatacc aggaattgtt gcgtgctggt gctgttttcc ctcagagatc 661 agagagatca gctcctgtgt tcacacctcc tcaaacacag cctttgacat cttaccctcc 721 aaatcttcgt aacgctggac ctggtaatga tgtgcctgaa ccttcagcag agccagaatt 781 tccgactcta agtttgtcgg agattcaaaa tgcaaaaggt atcatggatg tgcttgcgga 841 gatgctgagt gcattagagc ccggaaacaa ggaggatctc aaacaagagg ttatggtcga 901 tctggtggag cagtgtcgta catacaaaca aagagtggtg cacctcgtca actcgacttc 961 ggacgagtct ttgttatgtc aaggtctggc tttgaatgat gacttgcagc gtgtcttaac 1021 caattatgaa gcaattgctt ctggattacc tggaacttct tctcagatcg agaagcccaa 1081 gtccgagaca ggaaaatccc ttgttgatgt tgatggtcca cttattgata caggggacag 1141 cagtaatcag gcgaacggag ctacatcgag ctctggtaac ggggttctaa atcagttggc 1201 cctccctgca ccacctgtaa ctaatggttc agccaattcc aaaatagacc tcctcagtgg 1261 cgatgatctt gcccttgttc ctgttggacc tcctcagcca gcaagtccgg ttgcatcaga 1321 tcaaaatgca ctcgccctta tcgacatgtt ctcagataat actaataatc caagtcctgc 1381 aactgcacca agtggcaatc cagctcagaa tattcctttg aatcctcaag ggcaccaaca 1441 accaaatagt caagctggag aagctggatt acaacaatcc aatggatttg cgcctcaagt 1501 gggttattcg cagtttgagc agccatcata cgggcaagga gtctcttctc cctggagcag 1561 tcagcctgca cagcaaccag tccagccatc ttatggtgcc caagacagta cggcatttcc 1621 acctccccca tgggaagctc agctccaaga ctatagtccc tctgcggagt caggaagtcc 1681 gttttctcct ggaatgcatc caactcagac tgccttcaca catgctcaac cagttaacaa 1741 caacaatcca tatcctcaaa ttccccaaac cgggccacca gtcaacaata acagtccata 1801 tgctcaaatg ccccaaacag gtcaagcagt tgccaacatc agtccatatc ctcaaattcc 1861 acaaaacggc gtgtacatgc caaaccaacc aaatcaggct cttgggtcag gctatcaacc 1921 acagcaacaa cagcagcagc agatgatgat ggctcagtac tatgcccaac agcaacagct 1981 acagcaacaa caacagcaac aggcgtatgg aaaccagatg ggaggatacg gatatggcta 2041 taatcaacag caacaaggaa gcagcccata tctggaccag caaatgtacg gtttatccat 2101 gagagaccag acatcgcatc aggtagcatc atcatcatct accacatctt atctgcctcc 2161 aatgaaacct aagaataaac cagaggacaa gctatttggg gatcttgtgg acatctccaa 2221 attcaagcct acaaaaccga cttccggaag agctggtacc atgtgaaaat tcctccatcc 2281 attcatcatt taccagtatt catctcctct atcctcctca gctaactctc tttcttctct 2341 ttgttaagct tttttcatca ttgattttat taccctcttg ggagataaca tagatataca 2401 tatgtgttat gttcttcctt ataatttacc gttggttatg ggtttgtata tttcttgtag 2461 agaaaagaaa actggaaaat cttttgttga gaactcagcg atttggggtt tgtctcgaga 2521 ttctatttta ggacatttta atctctcatt tgtattttca gaccttttat ttgttatatc 2581 cattggcaat aaagtttgat atcaattgg //