Dbfetch
LOCUS NM_116780 1926 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein (YAO), mRNA. ACCESSION NM_116780 VERSION NM_116780.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1926) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 1926) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1926) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1926) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_116780.2. FEATURES Location/Qualifiers source 1..1926 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" gene 1..1926 /gene="YAO" /locus_tag="AT4G05410" /gene_synonym="C6L9.90; C6L9_90; YAOZHE" /note="Encodes a nucleolar protein with seven WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis. YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis." /db_xref="Araport:AT4G05410" /db_xref="GeneID:825889" /db_xref="TAIR:AT4G05410" CDS 115..1629 /gene="YAO" /locus_tag="AT4G05410" /gene_synonym="C6L9.90; C6L9_90; YAOZHE" /inference="Similar to RNA sequence, EST:INSD:BP800291.1,INSD:ES052255.1,INSD:ES004448.1, INSD:ES191150.1,INSD:EH928733.1,INSD:ES137645.1, INSD:EL970605.1,INSD:Z24466.1,INSD:BP814725.1, INSD:AV831879.1,INSD:ES100216.1" /inference="Similar to RNA sequence, mRNA:INSD:BT000325.1,INSD:BX826450.1,INSD:AY099817.1" /note="YAOZHE (YAO); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: acceptance of pollen, mitochondrial fission, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleolus, anaphase-promoting complex, small nucleolar ribonucleoprotein complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G21130.1); Has 47131 Blast hits to 24802 proteins in 761 species: Archae - 50; Bacteria - 6358; Metazoa - 18156; Fungi - 10195; Plants - 5539; Viruses - 94; Other Eukaryotes - 6739 (source: NCBI BLink)." /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="NP_192450.1" /db_xref="GeneID:825889" /db_xref="TAIR:AT4G05410" /db_xref="Araport:AT4G05410" /translation="MKYNNEKKKGGSFKRGGKKGSNERDPFFEEEPKKRRKVSYDDDD IESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGEKRKRLAEEMLNRRREAMR REREEADNDDDDDEDDDETIKKSLMQKQQEDSGRIRRLIASRVQEPLSTDGFSVIVKH RRSVVSVALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDEILKSHGMKLREPRN KNHSRESLALAVSSDGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGT SELYSGSFDRTVKVWNVEDKAFITENHGHQGEILAIDALRKERALTVGRDRTMLYHKV PESTRMIYRAPASSLESCCFISDNEYLSGSDNGTVALWGMLKKKPVFVFKNAHQDIPD GITTNGILENGDHEPVNNNCSANSWVNAVATSRGSDLAASGAGNGFVRLWAVETNAIR PLYELPLTGFVNSLAFAKSGKFLIAGVGQETRFGRWGCLKSAQNGVAIHPLRLA" ORIGIN 1 aaataaacaa aatcgttttc cagcttcttc cgtcgccact aaaccctgag gctaaaccta 61 gacgagtcaa agtgtaaaat cgttaaaccc taagagggag tgagagagag aagaatgaag 121 tacaacaacg agaagaagaa aggaggaagc tttaagagag gaggtaaaaa gggttcgaat 181 gaaagggatc cattttttga ggaagagccg aagaaacgga gaaaagtcag ttacgatgac 241 gacgatatcg agtctgtgga ctctgatgcg gaagagaacg gatttactgg cggagatgaa 301 gatgggagaa gagttgatgg ggaagtggag gatgaagatg agtttgctga tgagacggcg 361 ggagagaagc ggaagagatt ggcggaggag atgctgaata gaaggaggga agcgatgagg 421 agagagcgtg aggaagcgga taatgatgat gatgatgatg aagatgacga tgagactatt 481 aagaagagtt tgatgcagaa gcagcaggag gatagtggta ggattcgaag acttattgca 541 tcgagggttc aggagccact aagtactgat gggtttagtg ttattgtcaa gcaccgacga 601 tctgttgtgt cggtagcttt atcggatgac gattctagag gattttcagc ttcaaaagat 661 ggtactatta tgcattggga tgtatcttct ggtaaaactg acaaatacat atggccaagt 721 gatgaaattc tcaagtcgca tgggatgaaa ttgagggagc ctcgtaacaa aaatcacagt 781 agagaatctc ttgctttagc tgttagctct gatggtcgtt atttggccac tggaggagtt 841 gaccgtcatg ttcatatttg ggatgttcgt acccgagagc atgtccaggc ctttccaggt 901 caccggaaca cagtttcttg tctatgtttc agatacggaa cttcagaact ctattctggt 961 tcatttgata gaactgtgaa ggtgtggaac gtagaagata aagcatttat aactgaaaat 1021 catggacacc agggtgaaat tctagccatt gatgcactga ggaaggagcg tgcacttacg 1081 gttggaagag atagaaccat gctgtatcat aaggtgcctg agagcacccg tatgatctat 1141 cgagctcctg catcgtctct tgagagctgc tgtttcatca gtgataatga gtacctgtct 1201 ggttcggata atggaactgt tgctctttgg ggcatgttaa aaaagaaacc ggtgttcgtt 1261 ttcaagaatg cacatcaaga tatacctgat gggattacca ccaatggaat cttagaaaac 1321 ggtgatcatg aaccagtcaa caataactgt tcagcaaatt cttgggtcaa tgcagttgct 1381 actagtagag gcagtgatct tgctgcatct ggagctggta atggttttgt gcgtttgtgg 1441 gctgttgaaa ctaatgcaat tcgacctttg tacgagcttc cactgactgg atttgtcaac 1501 tctttggctt ttgcaaaatc gggtaaattt ctgattgccg gtgttggaca ggaaactcga 1561 tttggaagat ggggatgctt aaaatctgcg caaaatggtg tcgcaataca tcccttaaga 1621 ctggcataag tatttcattg ggataaatga agcgttgtta tggatagttt tgagttgcta 1681 aaaagccaaa gatctaatcg caagtcatat agggattaca tttccttgta gctcttgaag 1741 tttttgctcc cttttttgtt tgttccttgt accatttttt cttaatacga gagataagaa 1801 cttatcattt tgaggctctg aagaatcaaa gaggataaca gttcccaatt ttttcattct 1861 ctcagtaaag ctttttgttt cgttttccca aatgttgaag ataagtatat gaaaaggcaa 1921 attatt //