Dbfetch
LOCUS NM_105792 1395 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana COP9-signalosome 5B (CSN5B), mRNA. ACCESSION NM_105792 VERSION NM_105792.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1395) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1395) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1395) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1395) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1395) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_105792.1. FEATURES Location/Qualifiers source 1..1395 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1395 /gene="CSN5B" /locus_tag="AT1G71230" /gene_synonym="AJH2; COP9-signalosome 5B; CSN5; F3I17.12; F3I17_12" /note="Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses." /db_xref="Araport:AT1G71230" /db_xref="GeneID:843463" /db_xref="TAIR:AT1G71230" CDS 155..1231 /gene="CSN5B" /locus_tag="AT1G71230" /gene_synonym="AJH2; COP9-signalosome 5B; CSN5; F3I17.12; F3I17_12" /inference="Similar to RNA sequence, EST:INSD:EG451597.1,INSD:AV823061.1,INSD:ES067496.1, INSD:EG448708.1,INSD:EG453374.1,INSD:EG455263.1, INSD:ES068967.1,INSD:ES008445.1,INSD:EG448597.1, INSD:EG455041.1,INSD:EH872898.1,INSD:EG451486.1, INSD:EG477819.1,INSD:EG453485.1,INSD:EH903895.1, INSD:EH925149.1,INSD:EG453263.1,INSD:EG477930.1, INSD:ES056766.1,INSD:EG478041.1,INSD:AV783964.1, INSD:EG448153.1,INSD:EG477708.1,INSD:EG477375.1, INSD:ES039321.1" /inference="similar to RNA sequence, mRNA:INSD:AY124816.1,INSD:AF395061.1,INSD:AF411778.1, INSD:AF087412.1" /note="COP9-signalosome 5B (CSN5B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome 5A (TAIR:AT1G22920.1); Has 1278 Blast hits to 1275 proteins in 253 species: Archae - 0; Bacteria - 6; Metazoa - 459; Fungi - 394; Plants - 243; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink)." /codon_start=1 /product="COP9-signalosome 5B" /protein_id="NP_177279.1" /db_xref="Araport:AT1G71230" /db_xref="GeneID:843463" /db_xref="TAIR:AT1G71230" /translation="MEGSSSTIARKTWELENSILTVDSPDSTSDNIFYYDDTSQTRFQ QEKPWENDPHYFKRVKISALALLKMVVHARSGGTIEIMGLMQGKTDGDTIIVMDAFAL PVEGTETRVNAQDDAYEYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQR LNQQHQEPFLAVVIDPTRTVSAGKVEIGAFRTYSKGYKPPDEPVSEYQTIPLNKIEDF GVHCKQYYSLDVTYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEK LEQAESHLVQSRFGGVVPSSLHKKKEDESQLTKITRDSAKITVEQVHGLMSQVIKDEL FNSMRQSNNKSPTDSSDPDPMITY" ORIGIN 1 attttcacca cttttctctt cttatatata agtcaatccc cgaagtaaca tttttgacac 61 agttttcaat tcttcagcag acagatcgat cacactccat cgattccgta tgaaacccta 121 gatttctgca actgaattcc taattcgaaa aagaatggag ggttcgtcgt cgacgatagc 181 aaggaagaca tgggaactag agaacagcat tctaacagta gactcacctg attcaacctc 241 cgacaacatc ttctactacg acgatacttc acagactagg ttccagcaag agaaaccgtg 301 ggagaatgat cctcactact ttaaacgagt caagatctca gcgctcgctc ttcttaagat 361 ggtggttcac gctcgctctg gtggtacaat tgaaataatg ggtcttatgc aaggtaagac 421 cgatggtgat actatcattg ttatggatgc ttttgcttta ccagtggaag gtactgagac 481 aagggttaat gctcaggatg atgcttatga gtacatggtt gagtattcac agaccaacaa 541 gctcgcgggg cggctggaga atgttgttgg atggtatcac tctcaccctg gatatggatg 601 ctggctctcc ggtattgatg tttctacgca gaggcttaac caacagcatc aggagccatt 661 tttagctgtt gttattgatc ccacaaggac tgtttcagct ggtaaggttg agattggtgc 721 tttcagaaca tactctaaag gatataagcc tccagatgaa cctgtttctg agtatcaaac 781 tattccttta aataagattg aggactttgg tgttcactgc aaacagtact attcattaga 841 tgtcacttat ttcaagtcat ctcttgattc tcaccttctg gatctactat ggaacaagta 901 ctgggtgaac actctttctt cttctccact gctgggtaat ggagactatg ttgctggaca 961 aatatcagac ttagctgaga agcttgagca agccgagagt catctggttc agtctcgctt 1021 tggaggagtt gtgccatcat cccttcataa gaaaaaagag gatgagtctc aactaactaa 1081 gataactcgg gatagcgcaa agataactgt ggaacaggtc catggactaa tgtcgcaggt 1141 cataaaagat gaattattca actcaatgcg tcagtccaac aacaaatctc ccactgactc 1201 gtcggatcca gaccctatga ttacatattg aagttgctct tcttttggtt tctagttttg 1261 gattgaccca tcatttgttg tcctttcatt tattttctgt tgtgtaaaga attataatgc 1321 taatgagaat aatacagaag aagattttgg ttaaagaaat gtttttaagc ccattcgatt 1381 cgtcggggtt aaagg //