Dbfetch
LOCUS NM_103009 6190 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana HAC13 protein (HAC13) (HAF01), mRNA. ACCESSION NM_103009 VERSION NM_103009.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 6190) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 6190) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6190) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 6190) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 6190) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On May 26, 2011 this sequence version replaced NM_103009.3. FEATURES Location/Qualifiers source 1..6190 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..6190 /gene="HAF01" /locus_tag="AT1G32750" /gene_synonym="F6N18.13; F6N18_13; GTD01; GTD1; HAC13; HAF1; HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13; HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13; HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1; TAF1; TBP-ASSOCIATED FACTOR 1" /note="This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation." /db_xref="Araport:AT1G32750" /db_xref="GeneID:840169" /db_xref="TAIR:AT1G32750" CDS 293..6052 /gene="HAF01" /locus_tag="AT1G32750" /gene_synonym="F6N18.13; F6N18_13; GTD01; GTD1; HAC13; HAF1; HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13; HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13; HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1; TAF1; TBP-ASSOCIATED FACTOR 1" /inference="Similar to RNA sequence, EST:INSD:EH841494.1,INSD:ES132991.1,INSD:EL152899.1, INSD:EL977763.1,INSD:ES164684.1,INSD:ES162501.1, INSD:ES100749.1,INSD:EH887452.1,INSD:EL063629.1, INSD:ES214229.1,INSD:EL027187.1,INSD:EL016846.1, INSD:EH913695.1,INSD:EL304637.1,INSD:EH961532.1, INSD:EH923903.1,INSD:EH905011.1,INSD:EL090737.1, INSD:ES150052.1,INSD:AU238935.1,INSD:EL151635.1, INSD:EL008978.1,INSD:EL135138.1,INSD:EL292949.1, INSD:EL138800.1,INSD:EL073389.1,INSD:DR381882.1, INSD:EL187325.1,INSD:EL256954.1,INSD:AI997261.1, INSD:EL182589.1,INSD:EL993380.1,INSD:AV554641.1, INSD:EH841496.1,INSD:AU230186.1,INSD:CD529625.1, INSD:EH955522.1,INSD:ES207395.1" /inference="similar to RNA sequence, mRNA:INSD:BX813450.1,INSD:AK118081.1,INSD:AF510669.1" /note="HAF01; FUNCTIONS IN: histone acetyltransferase activity, DNA binding; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TAFII-230 TBP-binding (InterPro:IPR009067), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the TAFII250 family 2 (TAIR:AT3G19040.1); Has 22854 Blast hits to 14376 proteins in 1001 species: Archae - 24; Bacteria - 596; Metazoa - 11292; Fungi - 2677; Plants - 2799; Viruses - 159; Other Eukaryotes - 5307 (source: NCBI BLink)." /codon_start=1 /product="HAC13 protein (HAC13)" /protein_id="NP_174552.1" /db_xref="Araport:AT1G32750" /db_xref="GeneID:840169" /db_xref="TAIR:AT1G32750" /translation="MAESNGKGSHNETSSDDDDEYEDNSRGFNLGFIFGNVDNSGDLD ADYLDEDAKEHLSALADKLGSSLPDINLLAKSERTASDPAEQDYDRKAEDAVDYEDID EEYDGPEVQVVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQAPV EKSLETEKREPVVLKEDKALEYEEEASILDKEDHMDTEDVQEEEVDELLEGTLDDKGA TPLPTLYVEDGMVILQFSEIFAIHEPPQKRDRRENRYVTCRDKYKSMDISELVEDDEE VLLKSHGRIDTHVEQADLIQLDVPFPIREGLQLVKASTIGGITPESREFTKLGRDSCI MGELLKQDFIDDNSSLCQSQLSMQVFPLDQHEWERRIIWEHSPEISGNSGEIFEPGLE PEGMLVKGTNSETEQESLNVVNSRVQVQADNNMFVPFSANLLESFGSRGSQSTNESTN KSRHHPQLLRLESQWDENHLSGNDEAGVKKIKRLEKDALGRFSRLVLRERDLGDEAWL DSIIWDSEKELSRSKLIFDLQDEQMVFEIFDNEESKNLQLHAGAMIVSRSSKSKDETF QEGCESNSGWQFNLSNDKFYMNGKSSQQLQANTNKSSVHSLRVFHSVPAIKLQTMKSK LSNKDIANFHRPKALWYPHDNELAIKQQGKLPTRGSMKIIVKSLGGKGSKLHVGIEES VSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTKVHLWPW AQKLPGENKSLRPPGAFKKKSDLSTKDGHVFLMEYCEERPLMLSNAGMGANLCTYYQK SSPEDQRGNLLRNQSDTLGNVMILEPGDKSPFLGEIHAGCSQSSVETNMYKAPIFPQR LQSTDYLLVRSPKGKLSLRRIDKIVVVGQQEPRMEVMSPGSKNLQTYLVNRMLVYVYR EFFKRGGGEHPIAADELSFLFSNLTDAIIKKNMKIIACWKRDKNGQSYWTKKDSLLEP PESELKKLVAPEHVCSYESMLAGLYRLKHLGITRFTLPASISNALAQLPDEAIALAAA SHIERELQITPWNLSSNFVACTNQDRANIERLEITGVGDPSGRGLGFSYVRAAPKAPA AAGHMKKKAAAGRGAPTVTGTDADLRRLSMEAAREVLIKFNVPDEIIAKQTRWHRIAM IRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLLSLSAFDG DENESENEANSDLDSFAGDLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQV ETDEEIEDEATEYAELCRLLMQDEDQKKKKKKMKGVGEGMGSYPPPRPNIALQSGEPV RKANAMDKKPIAIQPDASFLVNESTIKDNRNVDSIIKTPKGKQVKENSNSLGQLKKVK ILNENLKVFKEKKSARENFVCGACGQHGHMRTNKHCPRYRENTESQPEGIDMDKSAGK PSSSEPSGLPKLKPIKNSKAAPKSAMKTSVDEALKGDKLSSKTGGLPLKFRYGIPAGD LSDKPVSEAPGSSEQAVVSDIDTGIKSTSKISKLKISSKAKPKESKGESERRSHSLMP TFSRERGESESHKPSVSGQPLSSTERNQAASSRHTISIPRPSLSMDTDQAESRRPHLV IRPPTEREQPQKKLVIKRSKEMNDHDMSSLEESPRFESRKTKRMAELAGFQRQQSFRL SENSLERRPKEDRVWWEEEEISTGRHREVRARRDYDDMSVSEEPNEIAEIRRYEEVIR SEREEEERQKAKKKKKKKKLQPEIVEGYLEDYPPRKNDRRLSERGRNVRSRYVSDFER DGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVEN PMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYNDGRNPGIPPLADQLLEICDYL LDDYEDQLKEAEKGIDPND" ORIGIN 1 cgcttcgcaa ttttcttctt ttttttgtta ttactttttt ttttcctccg atttgagagt 61 ttgcttacct cggaacttct ctccgacatc gtaccgtctc gtccgattga gctggtttac 121 ctttccggcg aagcttactt gtaccctcaa ttagggtttc aagaaagaac cctccaatcc 181 aacaatctcg tatcagtgaa tggttttgat tgagttttaa tggttgggga tttgggaagg 241 acaattgcct tgtcgtctcc cgattgtcac cattgtagtt aaatctttga atatggctga 301 atccaatggc aagggttccc acaacgagac ttcctcagat gacgatgatg aatatgagga 361 caacagcagg ggttttaacc ttggattcat ctttggaaat gttgataact ctggggactt 421 ggacgctgat taccttgatg aggacgccaa agaacatctt tctgcattgg cagataagct 481 gggttcatct ctaccagata taaatttatt ggcaaaatca gaacgtacag caagtgatcc 541 agctgagcaa gattatgata gaaaagctga ggatgctgtt gattatgagg atattgatga 601 agagtacgat gggcccgaag ttcaagtagt cagtgaggaa gatcatctac tgccaaaaaa 661 ggagtatttt tcgactgcag ttgctttggg tagtttaaag tccagagctt ctgtgtttga 721 tgatgaagat tatgacgagg aagaagaaca agaggaggag caagcgccag ttgaaaaatc 781 tcttgaaact gaaaagaggg aaccagttgt cttaaaggaa gacaaggcct tggagtatga 841 agaggaggct agcatcttgg ataaagagga tcatatggac accgaagatg tccaggagga 901 ggaggtggat gagttattgg aaggtacatt ggatgacaaa ggcgccaccc cactgcctac 961 gttgtatgtg gaagatggta tggttatctt acagttctcc gagatatttg ctatccatga 1021 gcctccacag aaacgggata ggagagaaaa tagatatgtc acttgtagag acaaatacaa 1081 atctatggat atatctgagc ttgttgaaga cgatgaggag gtactcctga agagccatgg 1141 taggattgat actcatgtag aacaagctga tctgattcag ctggatgttc cctttccaat 1201 tagagagggt ttacagctgg taaaagctag cacaataggt ggtatcacac cagaatcaag 1261 agaatttacg aagctaggaa gagattcatg tattatgggt gaactgttga agcaagactt 1321 catagatgat aattcatctc tgtgccaatc tcaattatcg atgcaagttt ttcctcttga 1381 ccagcatgaa tgggaacgtc ggattatttg ggaacattct cctgaaatta gtggtaattc 1441 tggtgagatc ttcgaacctg gacttgagcc ggaaggtatg ctggttaaag gaacaaattc 1501 agagactgaa caagaaagct tgaatgtggt gaactctaga gtgcaagttc aagcggacaa 1561 taatatgttt gtgccttttt ctgccaatct gttggagtct tttggctcaa gaggttccca 1621 gtcaacaaac gagtccacta acaaaagtag acatcatcca caactgctaa gattagaatc 1681 ccagtgggat gagaatcatc ttagtggaaa tgatgaagct ggagtaaaga agattaagcg 1741 acttgaaaaa gacgcccttg ggcgctttag cagacttgta ttgcgagaga gggatttggg 1801 ggatgaggca tggttagata gtataatatg ggactcagag aaagagttga gcagatctaa 1861 actaattttt gatcttcaag atgagcaaat ggtctttgaa attttcgata acgaggaaag 1921 caaaaatctt caacttcatg ctggagctat gattgtatcc cggtcttcaa aatccaagga 1981 tgaaaccttt caagaaggct gtgaatcaaa ttctgggtgg caatttaatc tttccaatga 2041 caagttttat atgaatggga aaagctctca gcaactgcag gcaaatacta ataaatccag 2101 tgttcatagt ttgagagttt ttcattcagt accagcgatt aaactgcaga cgatgaagag 2161 taaattgagc aataaagaca tagcaaattt tcaccggccc aaagctttat ggtatccaca 2221 tgacaatgag ctagccatta aacagcaagg aaagttaccg acccgaggat ccatgaaaat 2281 tatagttaag agcctggggg gtaaaggaag caagctacac gttggcatag aggaatctgt 2341 ctcttcttta agagccaagg cttctagaaa gctagatttt aaggaaacag aagcagtgaa 2401 gatgttctat aagggaaagg aacttgacga tgaaaagtct cttgctgcac aaaatgttca 2461 accaaattcc ttggttcatc ttatacgtac taaagtacat ctgtggccat gggcacagaa 2521 gctacctggc gaaaataaat ctttgagacc tcctggggca ttcaaaaaga aatctgacct 2581 atctactaaa gatggccatg ttttcttgat ggagtactgc gaggagaggc cgctgatgct 2641 cagcaatgca ggaatgggtg caaatttgtg cacatattat cagaagtcat cccctgagga 2701 tcaacgtggc aacttgctgc gcaatcaaag tgacacctta gggaatgtga tgattctaga 2761 acctggggac aaatctcctt tccttgggga gatacacgct ggttgcagtc agtcatctgt 2821 tgaaacaaat atgtataaag cacctatttt tccgcagaga ttgcagtcaa cagattactt 2881 gttggtccgg tctcctaaag gaaagctctc tctaaggcgt attgacaaga tagttgttgt 2941 cggacaacag gaacctcgca tggaagtaat gtctcctgga tcaaagaatc tacagactta 3001 tttagtgaac agaatgttgg tttatgtgta ccgagaattt tttaagcgtg gtggggggga 3061 gcacccaatt gctgcagatg agctgtcttt cttattttct aacttgacag atgcaatcat 3121 caagaagaat atgaaaatta ttgcttgttg gaagagggat aaaaatggcc agtcttattg 3181 gaccaaaaaa gatagtttac tagaacctcc tgagagtgag ctgaaaaagc ttgtggcacc 3241 agagcatgta tgttcttatg agagtatgct agctgggctg tatcggctca aacatttagg 3301 gatcacccgg tttacattac ctgccagtat atcaaatgca ttggctcagc tcccagacga 3361 agctattgct cttgctgctg catcacatat tgagcgggag ttgcagatta ctccatggaa 3421 cctgagcagt aattttgttg cttgtacaaa tcaggacaga gcaaatatag agcggttgga 3481 aattactggg gttggtgatc cctctggacg gggtctagga tttagctacg tcagagctgc 3541 gccaaaagca ccagctgcag ccgggcatat gaagaaaaag gcagcagccg gccgtggagc 3601 cccaactgtc actggtacag atgctgatct tcgcagatta agcatggaag cagctcgaga 3661 ggttcttatc aagtttaatg tccctgatga gataattgcc aagcaaactc gatggcatcg 3721 tatagctatg atacggaagc tatcaagtga gcaggctgca tccggtgtta aggttgaccc 3781 tacaaccata ggcaagtatg ctcgtggcca gagaatgtct ttcctgcaga tgcaacagca 3841 ggcccgagaa aagtgtcagg agatttggga tagacagctt ttgtcccttt cagcttttga 3901 tggtgatgag aatgaaagcg aaaatgaggc gaatagtgac ttggactcct ttgccggaga 3961 tctggaaaat ctacttgatg ctgaggaagg tggggagggg gaagaatcta acatttctaa 4021 gaatgacaaa ttggatggag ttaaaggtct caagatgaga cggcggccat ctcaagttga 4081 gacagatgaa gagattgaag atgaagctac tgaatatgct gagttatgcc gactgctgat 4141 gcaagatgag gatcagaaga agaaaaagaa gaagatgaaa ggtgtgggag agggaatggg 4201 ctcttatcct cccccacgac ccaatatagc tttgcagagt ggtgaacctg tacgaaaggc 4261 caatgccatg gacaagaaac ctattgccat ccaacctgat gcatcgttct tagtaaatga 4321 gagcaccatc aaagacaaca gaaatgttga ttctattata aagaccccca aaggtaaaca 4381 ggtaaaagag aacagcaatt ctttgggcca gttgaagaag gtcaaaatac tgaacgaaaa 4441 cctaaaggta ttcaaggaaa agaaatcggc gagagagaac tttgtttgtg gagcctgtgg 4501 tcagcatggg cacatgagaa ccaataaaca ctgcccaaga tacagggaaa atacagaatc 4561 acaacccgaa ggcatagata tggataagtc tgccggaaaa ccgagttctt cagaaccatc 4621 aggtctgccc aagctgaaac ctattaagaa cagcaaagct gcgccaaaaa gtgcaatgaa 4681 aacttctgta gatgaagctc tgaagggaga taagttaagt tccaaaactg ggggtctccc 4741 tctgaagttt agatatggta tccccgctgg agatttgtca gataaacctg tttctgaagc 4801 tccaggaagt tctgagcaag cggtggtgtc tgacatagac actgggatta agtccacatc 4861 taagatcagc aaactcaaga tttcaagtaa ggcaaaacct aaagaatcaa agggtgaatc 4921 tgagagacgt tcacattcat tgatgcctac atttagcaga gagagagggg agagcgaatc 4981 acacaagcct tccgtctctg gacaaccctt gtctagtaca gagagaaatc aggcagcctc 5041 aagcaggcac actatttcta tcccgcggcc atcattaagt atggacacag atcaagctga 5101 atcgcgtagg cctcatcttg tgatacgacc accgacagaa agagaacagc ctcagaagaa 5161 acttgttata aaacgttcga aagagatgaa tgatcatgac atgagtagtc ttgaagagag 5221 tccacggttt gagtcccgga aaacaaaaag aatggcagaa ctggcgggtt ttcagaggca 5281 gcagagcttt agattgtcag agaattctct ggagcggaga ccgaaagagg atagagtatg 5341 gtgggaagaa gaggagataa gtacgggaag acatagggaa gtaagggcga gaagagatta 5401 tgatgatatg agtgtatcag aagaacccaa tgagatagct gagatcagaa gatacgaaga 5461 ggtaatacgg agtgagaggg aggaagagga acgacaaaaa gccaagaaga aaaagaagaa 5521 aaagaaactg caacccgaaa ttgtagaagg gtatctagaa gactatcctc ctcgaaaaaa 5581 cgatagaaga ttgtcagaaa gaggtcgaaa cgtcagaagc cgctatgtgt ccgactttga 5641 aagagatggt gcagaatatg cgcctcaacc aaaacgacgc aaaaaaggag aggttggcct 5701 agcaaacatc ttggaacgca tagtggacac actaagacta aaagaagaag tgtcacgtct 5761 cttcttgaaa ccggtatcca agaaggaagc tccagattat cttgatatcg tggaaaaccc 5821 gatggatctc tcgacaatcc gagataaggt acggaagata gagtacagaa accgagaaca 5881 gtttagacac gatgtctggc agataaagta caatgctcat ctttacaacg atgggcgtaa 5941 cccaggaata ccacctttgg cagatcagtt actggagatt tgtgattact tgttggacga 6001 ttatgaagat cagttaaaag aagcagagaa aggtatagat cccaatgact gagaaatttg 6061 taagatagaa atctgtaacc ctttctttag gccccccaaa aatgggtttc ttagcttagt 6121 taactatttt gtacgaatag caacatttcc atatcccata tctgtgtaaa gaatcccaag 6181 taatgaaaag //