Dbfetch
LOCUS NM_001300510 3397 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster ETHR, transcript variant C (ETHR), mRNA. ACCESSION NM_001300510 VERSION NM_001300510.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3397) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3397) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3397) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3397) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3397) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3397) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3397) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3397) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3397) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3397) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3397) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3397) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3397) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3397) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3397) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3397) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3397) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3397 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3397 /gene="ETHR" /locus_tag="Dmel_CG5911" /gene_synonym="anon-WO0170980.37; anon-WO0170980.38; CG5911; CG5911a; CG5911b; Dm ETHRa; Dmel\CG5911; ETH R; ETH-R" /map="93D1-93D2" /db_xref="FLYBASE:FBgn0038874" /db_xref="GeneID:42523" CDS 1175..2590 /gene="ETHR" /locus_tag="Dmel_CG5911" /gene_synonym="anon-WO0170980.37; anon-WO0170980.38; CG5911; CG5911a; CG5911b; Dm ETHRa; Dmel\CG5911; ETH R; ETH-R" /note="CG5911 gene product from transcript CG5911-RC; CG5911-PC; ETHR-PC; Ecdysis-triggering hormone receptor; ecdysis triggering hormone receptor; ETH receptor" /codon_start=1 /product="ETHR, isoform C" /protein_id="NP_001287439.1" /db_xref="FLYBASE:FBpp0308331" /db_xref="GeneID:42523" /db_xref="FLYBASE:FBgn0038874" /translation="MLPQIPSYIRTTAMFFCIVIMLLGVVGNVMVPIVIVKTKDMRNS TNIFLTNLSIADLLVLLVCTPTVLVEVNTRPETWVLGHEMCKAVPFVELTVAHASVLT ILAISFERYYAICEPLKAGYVCTKGRAILICVLAWGIAALFTSPILWVAEYKLAEYID GSSVAVCLTQAISDWTLAFFLMTISVFFVVPFVTLVVLYGIIARNLVSNRAAMLRARP TKPELSLKARKQVVLMLGAVVLSFFVCLLPFRVLTLWIILSTDQTLHDLGLVRYYSLL YFCRIMLYLNSAMNPILYNLMSTKFRRGFKRLCQDAGRLLLELVTLGRRKEDSSRGRR GTLSLGMGTNTNTNTNSSNATGATSSSILSRSSNRRCSEDISRTRLKIEMQMPCGSDL EAMAMLQHSTLGKGIARRVSDSRLMPLRNHQPRRHKPQISFDEESLEENKRSEAKIPT KCREKLPGIAREIVNLTENTL" ORIGIN 1 ggaaaacctg acgtcgagcg gttggccgga tcatttgccc ctttgcgcgt cgaaagaaag 61 tttcggattc gaaatttttg gaaaaataga actcacgcgt ctggtgtgac aggtgcatct 121 tggcatatat acgatatatt atcgtctttg tgggtgatgt ctctggttct ccaagcgaac 181 ggactgcact tctccgctgc cattagtgtc aacgccgatg tcagctggct gcggttgtcg 241 gcggcgtcgt gttaatgctt ttaattacat gcaaaacata aaaaagtatt tcgttaagtg 301 ttgccgtgaa gtttgacatc ggaaattaat gcacttgcca ccgcaggcat ttcgcggggg 361 ccaacgcacc agttccacat tcccgatcta tattccccgc cgatcttgag tttccgccac 421 tggtaagtgc cacttgagag cgcggacgac aaccgcaaag ctccactgat tgatttgttt 481 aatgcgcccg gatccggcga tagcggagta tccgtgaatc ccttggacaa cttaatttca 541 ttagcgcgta tttaagtgtg agcataaact tgccgggcgg gcaattacat cggatttggc 601 caggacaccc tctcgtaact cacttaattg aacagcgggc ggtggcggca acagccagcc 661 catcccaaaa tccgttcccc gagccccgag gatgttgtcc ctgtgatttc cattgcgaga 721 cttacgctcc cagtgccgca ggacgaggac gacgaggaca cagaggacat tgctgagggg 781 cagccacggc gtcgctgtgg ccaggactgg gcagcttcca aggctgacca gcatttgcgt 841 aggcccgagg atctgcctgt ggctcctgct cctggctctg cttctgctcc agacccaaga 901 tgcactaccc gcagcagcag cagcagcagc aacatctagc gcaacagcag ccacgtcgcc 961 gcagcaggct ggggtatccc gtggctctcc tagtggcggc catggcccac accacacacc 1021 tcatcgtttt ccagccgcag gacttgacca ccaggacaac tccaccgcag cagccgcaac 1081 agcagcaaca acatctgatg ctgaagccac agaaccaaca gcagccgcag ccacttcaac 1141 atcaagctcc aaggacgatg gcgatgctga gcagatgctg ccacagattc catcgtatat 1201 ccgcacaacc gccatgttct tctgcatagt catcatgctg ctgggtgtgg tgggcaatgt 1261 gatggtgccc atcgtgattg tgaagacgaa ggatatgcgc aactcgacaa acatcttcct 1321 aaccaacctg agcattgcgg acctgctggt gctgctcgtc tgcacgccca ccgtcctcgt 1381 ggaggtcaac actcgcccgg agacctgggt acttggccac gagatgtgca aggctgtgcc 1441 gttcgtggag ctcacggtgg cccacgccag tgtgctgacc atcttggcca tctcgttcga 1501 gcgctattac gcaatctgcg agccattaaa ggccggctac gtctgcacca aggggcgggc 1561 catcctcatc tgcgtcctgg cctggggcat tgctgcgctc tttacgagcc ccattctgtg 1621 ggtggccgag tacaagctgg ccgagtacat tgatggatcg tcggtggccg tgtgcctgac 1681 ccaggccatc agcgactgga cgctggcctt cttcctgatg accatctcgg tgttcttcgt 1741 ggtgccgttc gtgaccctgg tggtgctgta cggcatcatc gcccggaatc tggtctccaa 1801 cagggcggcc atgctgcgcg cccgtcccac gaagccggag cttagtctga aggcccgcaa 1861 gcaggtggtc ctaatgctcg gcgccgttgt gctgtccttc ttcgtctgcc tgctgccctt 1921 ccgcgtcctc accctgtgga tcatcctcag cacggaccaa acactgcacg atctgggatt 1981 ggtgcgctac tacagcttgc tgtacttctg taggatcatg ttgtacctca actcggccat 2041 gaatccgatt ctttacaacc tgatgtcgac caagtttcga aggggtttca agcggctttg 2101 tcaggacgca gggcgattac tgctggaatt ggtgacattg ggaagaagga aggaagactc 2161 ttctcgcggg cgcagaggta ccttgtcact gggcatgggc accaatacga acacgaatac 2221 caactcctca aatgccacag gagccacgag ctccagcatt ctctcgagaa gctccaatcg 2281 caggtgcagc gaggatatca gtcgcacccg ccttaagatc gagatgcaga tgccatgtgg 2341 cagcgacctg gaggccatgg ccatgctgca gcattccacc ttgggcaagg gaattgccag 2401 gcgagtgagt gatagccgtc tcatgcctct gagaaatcat caaccacgac gccacaagcc 2461 gcaaataagt ttcgacgagg agtcactgga ggagaataag cgtagtgaag cgaaaatccc 2521 aacaaaatgt cgagaaaagc ttcctggaat agcaagagaa atagtaaatc tgaccgaaaa 2581 taccctctaa gcgagatggg cgtgaaaaat cgcctttaac ccgtttacac actcgcttca 2641 cttggctgga atgtgccgat gacgctgatc ccgatcccga ttcctattcc cgctcctggt 2701 aaacacaaat cgcttcctga acgcttttgg cagccataat cgatttcagt cacccgctga 2761 cagctgccga gaatcccgaa tcgtagttgg gctgccgcct tggacatttc cgtaccaaaa 2821 acaatcaatt tttcgggcta ttaaactcga atgaatgtgc caaagataaa taacagcaac 2881 gacagccgaa cagcactaaa actaccacta ctggtcaggg ttaggagtcc agatatcgac 2941 tggcagtaag gggtaagcca ttaggtggcc ttcgaggagc ggagctggca aatggaaatg 3001 gcttaatatg cgtttgggcg aaccatcagg tcggcggata aacatgattt aggtgtattg 3061 aaatagtttc cgtacgccgg accgtacaaa atggccgcca ttacacgggc ggccatcacc 3121 ggaagtcgaa aaaactgttg cctacttgcc ggcagctcaa ataaaaagct tagctcaata 3181 tgcacacaat gtccacatgt aaacacagct gtacatacac atacataccc ccacacgcac 3241 acatagccaa atattaatat ttatatttgt acgaacatat ttatatacac atatttacat 3301 atatatagtc tgcttataaa tatgtacaag gaaccacacg cacacactca cacacacacg 3361 agagtttgta agtaaataaa ttttttatga caactca //