Dbfetch
LOCUS NM_001259945 3387 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster mushroom-body expressed (mub), transcript variant I, mRNA. ACCESSION NM_001259945 VERSION NM_001259945.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3387) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3387) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3387) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3387) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3387) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3387) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3387) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3387) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3387) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3387) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3387) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3387) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3387) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3387) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3387) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3387) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3387) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_001259945.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3387 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3387 /gene="mub" /locus_tag="Dmel_CG7437" /gene_synonym="anon-WO0172774.33; anon-WO0172774.35; anon-WO0172774.36; anon-WO0172774.37; CG7437; Dmel\CG7437; l(3)04093; l(3)j6B10; l(3)j8B3; MRE17; Mub; MUB" /note="mushroom-body expressed" /map="78F4-79A4" /db_xref="FLYBASE:FBgn0262737" /db_xref="GeneID:40436" CDS 842..2461 /gene="mub" /locus_tag="Dmel_CG7437" /gene_synonym="anon-WO0172774.33; anon-WO0172774.35; anon-WO0172774.36; anon-WO0172774.37; CG7437; Dmel\CG7437; l(3)04093; l(3)j6B10; l(3)j8B3; MRE17; Mub; MUB" /note="CG7437 gene product from transcript CG7437-RI; CG7437-PI; mub-PI; mushroom bodies; Mushroom-body expressed; mushroom body expressed; mRNA-like ncRNA in embryogenesis 17; poly (rC) binding protein" /codon_start=1 /product="mushroom-body expressed, isoform I" /protein_id="NP_001246874.1" /db_xref="FLYBASE:FBpp0293520" /db_xref="GeneID:40436" /db_xref="FLYBASE:FBgn0262737" /translation="MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGE IVNRFREESGAKINISDGSCPERIVTVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQ IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQI TQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQEVAKNP LASLAALGLAGMNPASTGGINHTGSAPAALAALAGSQLRTANPANRAQQQQHEMTVSN DLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLI NMSVELQKANLLEQAQSQQNGGAAAAPGAAAAGVAAVTGAAAPTSATNGAITTVTLTS GTGVVGAGAAGAAGVANGANPAANGGGSNGTISATGYASANGGQATNGSVGVNPAAAA ALSSPLASALQLLTKPGALSALSNLSALDLLNLTTLGNTNGAGANPGGPPVQTTGVNR AKGHYATSRFRQHQTETGGEAEKPRNKFNPY" ORIGIN 1 cagtgtatct gcttcgccct gcttgggcta ctcattcggc gaaaattaat ggtggtgttc 61 ggttctacgt cgcgcaaggc acagtctcta gagtctcgca gagctaagaa tacatctcag 121 aaaatcggca accaatatcc caagttcagc caagtttgcg gtgtgtaggc aagccatcga 181 aaagtaacga ccgaaataac ggcagttgtc gcatagcaaa tgccaattgc gaattgcgag 241 ttgcaaacgc aaatcaaagt gtgcgcagga gaataagaaa caaagaaacg caattaacaa 301 acgtgaagta acaatccggc aaagcgaata aacccgatac cgatttcgat ctgcaccaga 361 aaaaccttag gcacccaaca gatatacatc tctaaatgca tcagctaagc aacagtattc 421 ttgctcaaca ataaatatac gaaaactctg aacgcgtaaa tacaagaaat atttccgtag 481 ccgtgattat ttgttgcatt tgaataaaaa cttcgaagat acgggcagca gagttaacgc 541 agcgagctta agccaacaac gtagtacgac tagcaaaaga aaccaccaat ttaattttat 601 ctagagaaac atacaatacg catacgcaag caaagtagcc aaaatatcta tatgtttagt 661 acgtgtatcg ctcatttatg attgatatac tcgcatagca aagttatatt tacaaatccc 721 acaacataat cgcaagtgag ccgcaaaaga caactgctgc gatacagacc gccgagttcg 781 gtcagatcca catacacttt catccaaacc gcgttaagac aaagccagca aaatagatac 841 catggaagac aataacacga gcagcagtgc gggcggtgcg tccatcaaac acgaggatcc 901 atcggtgaca ctcacaataa ggctgattat gcaaggaaag gaggttggta gtattattgg 961 taaaaagggt gaaattgtca acagatttcg tgaagagtct ggtgccaaaa tcaacatttc 1021 ggatggctca tgcccggaac gtattgtgac tgtgtctggt acaactaatg caatcttttc 1081 ggcattcacg ctcattacaa agaagttcga agagttcaat gatgtaggca aagttggtaa 1141 aactcaaata cccattcgat tgattgtgcc cgccagtcaa tgtggatcgt taattggcaa 1201 gagtggttca aagatcaagg aaattcgtca gaccacgggc tgctccatcc aagtggccag 1261 tgaaatgcta cccaattcca cagagcgggc ggttaccttg agcggcagcg ccgagcagat 1321 cacccagtgc atctatcaga tatgtcttgt catgttggag tccccgccac gcggtgccac 1381 catcccgtac cgaccaaaac cacaggttac tggccccgtc atcctggcca atggacaggc 1441 tttcaccatc caaggaaact acgcggtgcc cacacaagag gtggccaaga acccgctggc 1501 cagtctggcc gccttgggcc tggctgggat gaatccggcc agcactgggg gcatcaacca 1561 cacaggctct gccccagcag ccttggctgc actggccggg tcgcaactgc gtacagcgaa 1621 tcccgcgaac cgagcccagc agcagcagca cgagatgacc gtctcaaacg acctgattgg 1681 ctgcatcatc ggcaagggtg gcaccaagat cgccgagatt cgccaaatat ccggcgccat 1741 gatccggatc tccaactgcg aggagcgcga gggcggcaat accgaccgca ccatcaccat 1801 cagcggcaat ccggactcgg tggccctggc ccaatactta attaatatga gtgttgagct 1861 gcagaaggcc aatctcctgg agcaggccca gtcccagcag aacggaggtg ctgccgcagc 1921 tcccggagct gctgctgctg gagtggcggc agtcaccgga gcagcagctc cgacctcggc 1981 cacaaacgga gctatcacga cggtgaccct caccagcggc actggtgtcg tgggagccgg 2041 tgctgcagga gccgccgggg ttgccaatgg cgcaaatccg gcggcaaacg gcggcggcag 2101 caatggcacc atctccgcca ccggatacgc cagtgccaat ggcggccagg ccacaaatgg 2161 atcggtcgga gtaaacccgg cagcggccgc cgccctgtcc agtcctctgg cctcggccct 2221 tcagctgctg accaaaccgg gagccctaag cgctctgtcc aacctgagcg ccctcgacct 2281 gctcaaccta accacgctgg gaaacaccaa tggggccgga gccaatccgg gcggaccgcc 2341 tgtgcagacg acgggcgtaa atcgggcaaa gggtcactat gccacctccc gattccggca 2401 gcaccagacg gagaccggtg gcgaagcgga gaagccgcgc aacaagttta atccgtacta 2461 ggggtagggc tgcagctgcg ttagctggag agcagtggag atatagtccc gtagatatat 2521 aggttttcat ggtagcgttg cgaaagcttt agtctttaga ttcttgaaga agaaaaattg 2581 tataaaattc gctttaaact tatgtggtat gcatacaatt tgcaaacgta ttcatattgt 2641 attcaaattc gtattcgaag tttcaagaca attcttacat ctagttaaag cacagtatca 2701 tcccagttat atgtagacag aacctacgca atatttatca acgtttttga aaaacaatct 2761 aaccacaaca ataagaagtc acacttagat tagccgcata gggcagctag agatttgaat 2821 aatggatcag aatcgaaaat caagcactta aaccattttg tgtattgaat acgtagggac 2881 agggtcatct gtgtatggcc cgattgaaat attttgacca agtgaccaag gaccctagtg 2941 ggcgctatag attttggacc ccaaaacttt tgataaatgc ctagtatgac ttatatacac 3001 cggtacatag aaatgtatcg aacataacag aatttgccaa attttagcgc atcccctagt 3061 atcgttcttc gaagctttag attagattag atcgcgttta tcggattcga ataccgaaca 3121 tcggatatag agcaggtacc gagcataaat ttatcctcaa cagccaacaa tctttaccca 3181 atccattcat tgtaacataa aacacgatcc aatacttata atcaattgta ctctcttaga 3241 tagtaagcac taaacgtatt tttcctatat atacgattat attatttaaa cattaagcat 3301 aaagacccaa aagccatttt ccgactaagg aagccgcagc aaagaaagtg aagcagacag 3361 atgatgaaat aaaaaataac cttctat // Unexpected Error when closing connection to refseq from NCBI E-utilities. Non-zero exit status returned (255). STDERR: "http status: 429 Too Many Requests Too Many Requests at /nfs/public/rw/es/projects/jdbfetch/util/ncbi_refseq_fetch.pl line 124."