Dbfetch
LOCUS NM_001259669 3235 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG12009), mRNA. ACCESSION NM_001259669 VERSION NM_001259669.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3235) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3235) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3235) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3235) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3235) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3235) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3235) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3235) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3235) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3235) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3235) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3235) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3235) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3235) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3235) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3235) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3235) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3235) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3235 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3235 /gene="CG12009" /locus_tag="Dmel_CG12009" /gene_synonym="Dmel\CG12009" /map="63C5-63C5" /db_xref="FLYBASE:FBgn0035430" /db_xref="GeneID:38405" CDS 343..2937 /gene="CG12009" /locus_tag="Dmel_CG12009" /gene_synonym="Dmel\CG12009" /note="CG12009 gene product from transcript CG12009-RB; CG12009-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001246598.1" /db_xref="FLYBASE:FBpp0300633" /db_xref="GeneID:38405" /db_xref="FLYBASE:FBgn0035430" /translation="MPEQTETEDEEAPAEAASMGTLTLPSNATSIRSDITDNFSCVNK TYGYYADVENDCQIFHVCLPVTYADGRENTFRWSFICPEETIFSQESFTCMRREDMTI ECEDSSRYYELNGNFGGPAEEESKPTPVESEEPEKEESEPEPEPVESEPEIPAEPEVQ TAKPMKPVKAQKPKPNRRKPQPQRKVPAVVTAAPEVEAIPEPSAPVEMEPKPLKPQRF TSRPHQERPQVKRPAIAAPPMRNELFNGIRKRPAIFNKPPTTVKPVEEVVENEPAVTE AVVQLSEPQPTLKLQTLFAEPEVIPVEVQEPEVQASEPAVTFVQPEPVVEEVVPSKVE IDTRIEDVKPIEAIEEIPAVIVESLDQSRPQEMQEEAKITEEEAKPEEEPKPEEEVKL EEELKSEEAAKPEVELKPQEIQAQEEPEVPAKVEEIIEANPEEIKSEPAIMEVSNSHE EPLVNLEALEAAKPADAPESMPATPEMEQHSPLVEEILDNTNDGEAQESLGGFKPVDP VMAAEAEQLITDFLNTLKKNEEKPETDLAESILPVNNTDVSIEEAKLPEPEIVDKNAS VEEQLLEETEDKKSHKTEMMQDSPIINIMQVQHMPMDYRIPVRVIPVEVQPVPAISEA SEVAKESAPEVVSESSLEEAKESAAEEAKESIPEEVVDTAPEEVKQIPNVEIQESPME EPKESSPEEIKESTPEEIKETAPETEVELVVAPDQTAFHDDDAQESLVTAAYMPSIED IVELVKERLDQTPKKDQMAPMELILTPGGAEPMSLVQSTPEQLEPESQPTEEAASTAG QEEEVILPIYKRVSTAEPAMSKVQTLPVTVSKVDTEALPETESQPEVREPKMDARKRR FLFRADAS" ORIGIN 1 gctctttaca cgcattctga cacgtttggc ttttacattt tgatattgac cttgtttaaa 61 ttaattgaaa gaaaacctgg ggccattaaa atgcagcgtg gggaaaagca aattgacatg 121 ccgcagcgcg ctcgttatca tcaagtttcg tgcaaagaaa tgcttatcat tagcaaaatt 181 aaaatcaatg aaattggcca taaaaattca attgacttgg cccaatgcgt gggagcaagt 241 ccaagttcca gctcgacttg gaggggatcg aaatgaattg gaactggaat caagaggaaa 301 gcacccgtga cgcgtgagga gcctgtccca gctgaggtgg aaatgccgga acagaccgaa 361 acggaggatg aggaggctcc agcggaagca gcttccatgg gaacgctcac cctgcccagc 421 aatgccacct ccattcgctc ggacatcacg gataacttct cgtgtgtcaa caagacctat 481 ggctactatg ccgatgtgga gaacgactgc cagatctttc acgtgtgcct gccggttacc 541 tacgccgatg gcagggaaaa tactttccgc tggagcttca tctgccccga ggagaccatc 601 ttcagtcagg aatcgttcac ctgcatgcgt cgcgaggaca tgaccatcga gtgcgaggat 661 agctccagat actacgaact gaatggcaac tttggtggtc ctgcggagga ggaaagtaag 721 cccactcccg tggagagcga ggagccggag aaggaggagt cagagcccga acccgaaccc 781 gttgagtcag agccagagat tccggcagaa ccagaagtcc agacagccaa gccgatgaag 841 ccagtcaagg cccaaaagcc caaacccaac cgaaggaagc cccagcccca gagaaaggtt 901 ccagctgtag ttactgctgc acctgaggta gaagctattc ccgagccaag tgcccccgtc 961 gaaatggagc cgaagccctt gaagccacag aggttcacca gcagacccca ccaggaaaga 1021 ccccaagtga agaggcctgc aattgctgct ccacctatgc gaaatgagct attcaatgga 1081 atccgcaagc gtccagccat cttcaataag ccaccaacta cagtgaaacc agttgaggag 1141 gtggtggaaa atgaaccggc ggtcacagag gcagtggttc aacttagtga gccccaaccc 1201 acactgaaac tgcagacctt gttcgcggaa ccggaagtta ttcctgtgga agtccaggag 1261 ccagaagttc aggcttccga accagctgtg actttcgttc agccagagcc cgttgttgag 1321 gaagtggtac cctcgaaggt ggagattgat accaggatcg aggatgtcaa gcccattgaa 1381 gccatcgaag agattcctgc cgtcatagtg gaaagtctgg atcaatcaag gccccaggaa 1441 atgcaggagg aagctaagat aactgaagag gaggccaaac cagaggagga gccaaagccg 1501 gaagaagaag tgaaactcga agaagaactg aagtcagaag aagcagctaa gccggaggtg 1561 gagctgaaac cccaggaaat tcaagcccaa gaagagcccg aagtgccagc caaggtggag 1621 gagatcattg aagctaatcc cgaggaaatt aaatcggagc cagctattat ggaggtcagc 1681 aactcccatg aggaaccctt ggtcaacctg gaagctctgg aagcggccaa gccagcagat 1741 gcgcccgaga gcatgccagc cactcctgaa atggaacagc acagtcctct tgtggaagaa 1801 atcctggata acactaacga tggagaggcg caggagtccc tgggaggctt caagccagtg 1861 gatcccgtga tggccgccga agcggaacag ttgatcaccg actttcttaa caccctcaaa 1921 aagaacgaag agaaaccaga gactgacttg gctgagagta tactgccagt aaataatacc 1981 gatgtgtcca ttgaggaggc caagcttccg gagcccgaga tcgtggacaa gaatgcatca 2041 gttgaggagc agttgttgga ggaaaccgaa gacaagaagt ctcacaagac cgagatgatg 2101 caggactctc cgatcatcaa tataatgcag gtgcaacata tgcccatgga ctacagaatc 2161 ccagtccggg ttattcccgt ggaagtccaa cctgttcccg caatctctga ggcatcagag 2221 gtcgctaagg aaagcgctcc agaggtggta tccgaatctt ctctagagga ggccaaggaa 2281 agtgctgcag aagaagctaa agaatccatt cccgaagaag ttgtcgatac agctcctgag 2341 gaagtcaaac aaattcctaa tgtagagatt caggaatccc ctatggagga gcctaaagaa 2401 tcttctcctg aagaaatcaa ggaaagcact cccgaggaaa tcaaagagac tgctccagag 2461 acagaggttg agctggtggt cgcgcccgac cagactgctt tccacgacga tgacgcccag 2521 gagagtctag tcacagccgc ctacatgccc tccatcgagg acatcgtgga actggtcaaa 2581 gagcgcctgg atcagacgcc caagaaggat cagatggctc ccatggagct gatactcaca 2641 cctggtggtg cagaacccat gtccttggtt cagagcactc cagaacagtt ggagccggaa 2701 tctcagccca cggaggaggc ggcatccact gccgggcagg aagaggaagt catcctgccc 2761 atttacaaac gcgtctcaac tgccgaaccc gccatgtcta aggtgcaaac gctgcccgta 2821 acggtgagca aagtggatac agaagcgctg ccggaaactg aatcccaacc ggaagtccgg 2881 gagcccaaga tggacgcccg caagcgacgt ttcctgttcc gcgccgatgc cagctaaaaa 2941 ggaaaacagg gagatgcagc gaaggacaga taacaatcct ggcaaggatt attcacccac 3001 ttagcccgaa ccggaacccc gttcacctcc tagttcccaa tacgctatcc cactcatttg 3061 cacctaggca aataaattta ataatttttt gatttcctag ttttatggcc atttctcaaa 3121 ggataattgc ggacgagcgt tgaaatttaa gtttagaatt gttgttccga ccagttaaag 3181 aaacaaacta caaaaaaaat tgcaaaaaaa tcttaaaata aaaatattaa aaatt //