Dbfetch
LOCUS NM_001202033 2918 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant I (CG30460), mRNA. ACCESSION NM_001202033 VERSION NM_001202033.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2918) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2918) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2918) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2918) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2918) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2918) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2918) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2918) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2918) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2918) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2918) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2918) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2918) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2918) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2918) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2918) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2918) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2918) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2918) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2918) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2918) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2918) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2918) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2918) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_001202033.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2918 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2918 /gene="CG30460" /locus_tag="Dmel_CG30460" /gene_synonym="anon-WO0140519.237; CG15607; CG15608; Dmel\CG30460" /map="53F4-53F6" /db_xref="FLYBASE:FBgn0050460" /db_xref="GeneID:36924" CDS 44..2710 /gene="CG30460" /locus_tag="Dmel_CG30460" /gene_synonym="anon-WO0140519.237; CG15607; CG15608; Dmel\CG30460" /note="CG30460 gene product from transcript CG30460-RI; CG30460-PI" /codon_start=1 /product="uncharacterized protein, isoform I" /protein_id="NP_001188962.1" /db_xref="FLYBASE:FBpp0291767" /db_xref="GeneID:36924" /db_xref="FLYBASE:FBgn0050460" /translation="MFDRTKRSLARDKYSGNHEEVLEAGEMTTPKPNLMSHSMTSSVH SDNTQAQVSSSRGGSRAKANSTVTQNQVNLFNEDPPSSPPPRERSALRRSKRTQRESC IEIDETMEQLRRNGSGDALQLAKLDCVEAPVLQPARRRKRGPKTDKLDAVEKQICLPQ VTMTFDELNGLIKRKGGTPICNVEMDEQGIGSLVSKHQSSATLVRQARRRIRTKENPD LELRALQSSCSAISKDVQYASLNSSLVPMQRNQSKVYSGSEEDSPRSEIQIKLETATM RTVCRPQKKSGRSSQLMTDSEPKRALPMSDLKESFEAINQSIGQTVLPRLQLGNERQD YEPEEDGADNYTSDLDDEPEGVDLMARAAKLIERARSSSSPIPNPEQVDSHSEYEEEQ PEAEREPPLNKQNGNVSRRVSLEDNESAIAYFKALNAKRRSNRSDSKMPEDKLQRQQS NASNASSQEEKSRQETEKRPADDDQRKREIFISIETEANAQGRSPISPDSLRHMVGNA QTHIDVLHIENGNEPEHARFSKISDTEDAGNEPRDQASQSTNRLTPSSSGSGLAPNVQ LNNAKNLIQQMHSEFRLMGEEASASMRRQLIGSSGGRGEEAQRSSSGLPAPNPTHQVV ASSPSADSDELSSLDGYPMSSSQGSRRGASSKLSTDSAYGSSNSPYSLSRQRSSELQA GTLQSQGLMRPHTASAKMASCMIDASTQAHTDYGTLKARQRLFAPECGNNNGEGGESY SSGSEHSFATNPKQEQNINYNYQQPLQQDQQKQQQMQKQQQMQQQQQMQQQQQMQQQQ MQQMNCNYNYHQEQQQLHHQQQQAKIPASTGYNTTNNNVPMTPTTSENSLMSTSSMSS SKKSNYCYECGSKFIFETAKFCMDCGLRRAEL" ORIGIN 1 tctcgtttca atttattttg ttgctattat ataattgacc gcgatgtttg acaggaccaa 61 gagatccctc gccagggata agtactccgg taaccacgag gaggttctgg aagcgggtga 121 gatgacaaca cccaaaccaa acctgatgtc ccattcgatg acgtcgtccg tgcacagtga 181 taacactcaa gctcaagtct ccagctcgcg aggaggaagt cgtgccaaag caaactccac 241 ggttacccag aaccaagtga acctgttcaa tgaggatcca ccatcatcgc cgccgcccag 301 ggaacgatct gcactgcgcc gttccaagcg cactcagcgg gaatcctgca tagaaattga 361 cgagaccatg gaacaactaa ggcggaacgg cagtggagat gctctccagt tggccaaact 421 cgattgcgtg gaagcgccag ttctccagcc agctagacga cgcaagagag ggcccaagac 481 ggataaacta gatgcggtcg aaaagcaaat ctgccttccc caagtaacca tgacatttga 541 cgagctcaat gggttaatca agcgcaaagg cggcacgccc atttgcaatg tggaaatgga 601 tgagcaggga atcggtagtc tggtctccaa gcaccaatca tcagcaaccc tagtgcgtca 661 ggcgcgtcgt cggattcgca ccaaggagaa ccccgatctg gagttgcgtg ccctgcaatc 721 gtcatgttca gcaatttcca aagatgtaca gtatgcttcc ctgaactcta gcctagtgcc 781 catgcagaga aatcagtcaa aggtgtactc cggatccgag gaggattcgc caaggtcaga 841 gattcagata aagctagaaa ctgcaaccat gcgcacggta tgccgacccc agaagaaatc 901 aggtcgctct tcccagttga tgactgactc ggagcccaaa cgagctttgc caatgtcaga 961 tttaaaggaa agctttgagg ccatcaacca atccataggg caaacagttc tcccaagatt 1021 acagctggga aatgagaggc aggactacga accggaggag gacggagcgg ataattatac 1081 cagtgatcta gatgatgaac ctgaaggtgt tgacctaatg gctcgagcgg caaaactgat 1141 agagagggct cgttcaagct ccagccccat ccccaatcct gagcaggtag atagccacag 1201 tgaatatgaa gaggagcaac cagaggcgga acgggaaccg cctttgaaca aacaaaatgg 1261 caacgtcagt cgccgtgtat cgcttgagga taacgaaagt gctattgcgt atttcaaggc 1321 acttaatgca aagcgtcgtt caaataggtc tgattcaaaa atgcccgagg acaagctgca 1381 acggcagcag tcgaatgcct ccaatgccag cagccaggag gagaagagcc gccaggagac 1441 ggagaaacgg ccggccgacg atgatcaacg gaagcgagag atttttatta gcattgagac 1501 ggaggccaat gctcaggggc gctcacccat ttcgcccgat tcactgcgcc acatggtggg 1561 caatgcccag acgcacatcg atgtcctgca cattgaaaac ggaaacgagc cggaacacgc 1621 aagatttagc aagatcagcg acacggagga cgccggaaac gagcccaggg atcaggccag 1681 ccaatctact aaccggctga ccccatcctc gagcggatcc ggattggcgc ccaacgtgca 1741 gctgaacaat gccaagaatc tgatccagca gatgcatagc gaatttcggc ttatgggcga 1801 ggaggccagt gcctccatgc ggcgccagct tatcggaagt agcggcggta gaggcgagga 1861 agcgcagcgc tccagtagtg ggctccctgc tccaaatcca acacaccagg tcgtggccag 1921 ctcaccgtcg gcggattcag atgagttaag cagtctcgat ggctatccca tgtcctcgtc 1981 gcagggttca cgtcggggag ccagctccaa gctaagcacg gattcagcat acggcagcag 2041 caactcacct tatagcttgt cgcgacaacg ctcctctgaa ctccaagccg gcacactaca 2101 gtcccaggga ttgatgcgtc cacatacggc cagtgccaag atggccagct gcatgatcga 2161 tgcctccacg caggcacaca ctgattatgg caccctgaag gctcgccagc gtctctttgc 2221 acccgaatgt ggaaacaaca atggcgaagg aggcgagtcg tacagtagcg gatccgaaca 2281 ctcttttgca accaatccaa aacaggagca gaacatcaac tacaactatc aacagccact 2341 gcagcaagat cagcagaagc agcagcagat gcagaagcag cagcagatgc agcagcagca 2401 acagatgcag cagcagcaac agatgcagca gcaacagatg cagcaaatga actgcaacta 2461 caactaccat caagagcagc agcagcttca tcatcagcag cagcaggcta aaatcccagc 2521 atcaacaggt tacaacacaa caaacaacaa tgtaccgatg acacccacaa cgtcagagaa 2581 ctcattgatg agcacctcgt ccatgagctc aagtaagaag tccaattact gctacgaatg 2641 tggctccaag ttcatattcg agaccgccaa gttctgcatg gattgcggct tgagacgtgc 2701 tgaactttag attaattcca cgtagccatt gttttcagta gctgacacca ctcacaaaac 2761 acagaaaatg aacactagcc cggaatgaag acgtcctcct ggatcggttt tgggatctta 2821 aatatatacc aaatgtagtt gttaaacgca aacagtttgc gaagagcgct aacaccgctt 2881 ctatacataa taatacgaat aatatatatt ttaatacg //