Dbfetch
LOCUS NM_001198524 1027 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana XH domain-containing protein (AT1G80970), mRNA. ACCESSION NM_001198524 VERSION NM_001198524.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1027) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1027) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1027) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1027) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1027) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_001198524.1. FEATURES Location/Qualifiers source 1..1027 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1027 /locus_tag="AT1G80970" /gene_synonym="F23A5.33; F23A5_33" /db_xref="Araport:AT1G80970" /db_xref="GeneID:844437" /db_xref="TAIR:AT1G80970" CDS 66..851 /locus_tag="AT1G80970" /gene_synonym="F23A5.33; F23A5_33" /note="XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH domain-containing protein (TAIR:AT1G80990.1)." /codon_start=1 /product="XH domain-containing protein" /protein_id="NP_001185453.1" /db_xref="Araport:AT1G80970" /db_xref="GeneID:844437" /db_xref="TAIR:AT1G80970" /translation="MDEFEGLKREVERLLDMVDSENSDCEEKIAIQEEVGDLPSSSVA VEFLEDEIDRKEEILLAASCTLLNMISGLDHSFDGNERDMGRLQVEEFRAACLGHKVL VNETEEQTFERADLIRTLWQKKILDSVRLAYLQGEKEMPFRPYDQTELEALKTDSGEK VYRLVRKGFREARVAVRTSVDFKPWDLEEGRECTLSELLDQLQALIRGRSVWVAWFKR VVLSDNLSNFWIQKANNKNSWLAYPWIRINLGNGKYCQFWSDH" ORIGIN 1 gccattccac atttttttat atttctctca aatttgttca agaatccctt tgtttctatc 61 caagaatgga cgaatttgaa ggattgaaga gagaagttga gagacttttg gatatggtag 121 attctgagaa cagcgattgt gaggaaaaaa tagcaataca agaagaagtt ggcgatcttc 181 cgagtagttc tgtggctgtg gagtttctcg aagacgagat cgatagaaag gaagaaatcc 241 ttcttgctgc gagttgcacg ctgctgaaca tgattagcgg acttgatcac tcctttgatg 301 gcaatgaaag agatatggga cgactacaag ttgaagaatt cagagccgcc tgtctcggcc 361 acaaagtgtt ggtgaacgaa acggaggagc aaactttcga gagagcggat ttgattagaa 421 ctctgtggca aaaaaaaatt ctcgactctg tgcgtttggc ttacttacaa ggggaaaagg 481 agatgccgtt tcgtccctac gatcaaaccg aattagaggc actcaaaacg gactcgggtg 541 agaaggttta caggcttgtt aggaagggct ttcgtgaagc gcgagtggct gtgcggacga 601 gtgttgattt caaaccatgg gatcttgaag aaggaagaga atgtactctt tccgagttac 661 tagatcagct tcaagcgtta atcagggggc gctctgtgtg ggtggcctgg tttaagagag 721 ttgtcctatc cgataatctc agcaacttct ggattcaaaa ggcaaacaac aaaaattctt 781 ggctagccta tccatggatt aggattaatc tgggtaatgg aaaatattgt cagttttgga 841 gtgatcattg atgtaaactg ggaaaaatgt cgacttacct tcactatttc tctgaccaat 901 acactctttt tccactcttt tttgttatga gaaatgaaaa gaagtaggaa ttgatttcgt 961 ctatttgtcg aaaaactgaa gttggtaatg attttgattg cagggcagta tgggggtggg 1021 atgattc //