Dbfetch
LOCUS NM_001124016 1419 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana PHD finger protein-like protein (ING2), mRNA. ACCESSION NM_001124016 VERSION NM_001124016.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1419) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1419) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1419) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1419) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1419) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_001124016.1. FEATURES Location/Qualifiers source 1..1419 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1419 /gene="ING2" /locus_tag="AT1G54390" /gene_synonym="F20D21.22; F20D21_22; INHIBITOR OF GROWTH 2" /note="ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA." /db_xref="Araport:AT1G54390" /db_xref="GeneID:841881" /db_xref="TAIR:AT1G54390" CDS 319..1047 /gene="ING2" /locus_tag="AT1G54390" /gene_synonym="F20D21.22; F20D21_22; INHIBITOR OF GROWTH 2" /inference="Similar to RNA sequence, EST:INSD:EL124628.1,INSD:BP669289.1,INSD:DR381291.1, INSD:BP578921.1,INSD:DR365759.1,INSD:EL133062.1, INSD:EH932690.1,INSD:DR233675.1,INSD:BE526737.1, INSD:EL218579.1,INSD:EH837143.1" /note="INHIBITOR OF GROWTH 2 (ING2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /codon_start=1 /product="PHD finger protein-like protein" /protein_id="NP_001117488.1" /db_xref="Araport:AT1G54390" /db_xref="GeneID:841881" /db_xref="TAIR:AT1G54390" /translation="MFLCVFRELIMFVFCLSLEALINQTRQQTKYCLGLASQSSKKGN GNHYNNGGLDEEETIEKMRKEIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDEDL NNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQPKKIDYRDRDWDRDRDF ELMPPPGSNRKDLMPIEEQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYTCV GLTPETRFKGKWYCPTCRLLPQSH" ORIGIN 1 gttttgcgta atctcaatgt ttgtggggct tttagttttt agcccatgta tggtttgata 61 actttagtaa ctcgtgagaa aaaaaaaagc ttcgttctca atcccaattc gaaatcctag 121 ctgaagtcta tgctccataa tcaaatccag ttcatcagag atcaaagatg gctattgcac 181 gaactggagt ttatgttgat gattaccttg agtatgcaag cactttccct gcagagctac 241 aaagattact aaacacagtt cgcgaactag acgagagatc tcaatgtaaa tttttgttat 301 tacattgttc tcttgcgtat gtttctttgt gtgtttcgtg aattgattat gtttgtgttt 361 tgtttgtcgt tggaagcgct tataaatcag acaagacagc aaactaagta ttgcttaggg 421 cttgcttcac agagttctaa aaagggtaat ggtaatcatt acaataatgg tggtcttgat 481 gaagaggaaa cgattgagaa aatgcgtaaa gagattgagt ctagtcagga aaatgcgtta 541 agtttgtgta ccgagaaggt tttattggcc cgacaagcgt atgatcttat agatagtcat 601 gtaaaacgac ttgatgaaga tctgaataat tttgcagaag atttaaagca agagggaaaa 661 attccaccag acgagccctc tgttcttcct ccactaccta tagttcctaa agcggaaaag 721 cgtaagtcct tctatggcac acctcagccc aagaagattg attatagaga tagagactgg 781 gatcgtgaca gggattttga gctcatgcct cctccaggaa gcaatcggaa agaccttatg 841 ccaattgaag agcagccaat cgatccaaac gaaccaactt actgtgtctg ccatcaggtg 901 tcctttggag acatgattgc ctgtgacaat gagaattgcc aaggaggtga atggtttcac 961 tatacatgcg ttggcctcac acctgagacc agattcaaag ggaaatggta ctgccccacc 1021 tgcagactcc tcccacagtc acactaatat catttgtacc tgtgagaagg tgccactggc 1081 atcttctttg gcaccttccc ttcatgacca atgccaccaa actcatcttt cttgttaccc 1141 aacatctagc aagtgcaagt agaagcaaac tttagatgga gaaatcatca tgttttgtaa 1201 acctcgggtt aattcgtgga gcatatattt tgtatatcaa ttgtatttgg gtattggtgg 1261 gcattttccg ttttattcta ctagtatcga tatttacatc tgcttctttc tttctttttt 1321 cccctcaaac catgagcctt tgtattgatc aaatgacatg tacaaaggtt ttgttcatca 1381 gaaggaattt cactaaaata aaaaattgct tgatatttt //