Dbfetch
LOCUS NM_001027038 4858 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Receptor-type tyrosine-protein phosphatase (clr-1), mRNA. ACCESSION NM_001027038 VERSION NM_001027038.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 4858) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 4858) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4858) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 4858) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Sep 4, 2019 this sequence version replaced NM_001027038.2. FEATURES Location/Qualifiers source 1..4858 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene 1..4858 /gene="clr-1" /locus_tag="CELE_F56D1.4" /db_xref="GeneID:3565419" /db_xref="WormBase:WBGene00000548" CDS 97..4431 /gene="clr-1" /locus_tag="CELE_F56D1.4" /standard_name="F56D1.4b" /note="Confirmed by transcript evidence" /codon_start=1 /product="Receptor-type tyrosine-protein phosphatase" /protein_id="NP_001022209.1" /db_xref="GeneID:3565419" /db_xref="WormBase:WBGene00000548" /translation="MRINRWIWWATVILLYLRTGLAADFFRSSEENDRKSSDDLDNFN STKIEPDKPKTAKELGVKSCESNQDCVHDGVCHRGNDGHGICMCPRSCPAITPKQCGY NYRTPSTCLLMDADYRSKYDVKEPTCYSRKCVCPPQFDDVHVTANQKPLRLNSTLLPT KCDKRDLAVVARAHPSTSVSKGIDVTLFCCINVDPEGFIDVASVFFIQNGTIMREATS HPFAPRNGLARRVHEKYSCWELEIKNAQTSDSGSYMCRVTASASDLDVTDTMQFEVKE HARRTHSYWYKRPKKVMPPSSSSSLKTSDDDDDSTPRQIKNLTVNPSERDAIVTWESE GGEDMAIDLRLVRRTDTRGQVVFSKDNLTSPVSIKDLRAATPYTLFVSGNNGQVPFEF TEHFTTKQKRPFPPKEEDVRVLNSGSALSCEVEWKSPAEPNGRITKYFVSVRGAMRKS DGSLTPDDLPAAVEVDKRCANWDGDENTSKHNGINPIDFANEFYSCKFGPLKPNRNYT VTVWAENSAGRSLPAVFHKNCVTNYAQPDMVETPQPLLSNNHSTFSLTFPQPPDDING PISCYYIAIVPLPANVSLDILPKSEEIVMHSFSKVFTNNLLPSSAEEKRFFAYIAESY VQLPEETTIGDGVRVSDLKACNVQYLSRYSSEDLALRRGLKYTGFLIVRVDKEEELNR KDVRNGADPNIFRNLIDKSVSPTSRTRTASPMSRHLRQLHLSGPAYGYSAYFKPILLD TESSSSGFGIFMKIILPFLLFLAFATGVTMFFVNRKGHMLSTWCPLFTKMTSKDVVER TLLKQTFGAIPVDDLPTEYVVRHRDTDFLFAQEYESLPHFQLDTVASNRKENAIKNRY NDIRAFDDTRVKLKKINGDDYSDYINANFIKSWKEKKLFIAAQAPVDATIGDFWRMVW EQESYLIVMVANLTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSDYAIRAFDIAH IGECGPDVIPNGNGVEYANVPIVKGQFANNSRRILQYHFTNWNDYKAPECSTGLLRFM YRLRELPQFNNSPVVIHCSAGVGRTGTFISIDSMLDQCLAEDKANIFEFVCNLRRQRN LMVQSLEQYVFIYKALAEWHMYGDTDEDVRDFEDHYQRLCASNRDRAVSFNQQSSTNG SISPRVAIVSSRESMTTSNGETGLEEEFKKLERNLTTPLSSNFAAKDENLLKNRYEAA VPFDKYRVILPPTIGHADSSYINASHIKGYFFDYIAAQDPVSEGTAFDFWRMIADQNV TTVVMLSDETDWSDVEKYWPIDGSGTECHFGSERNSVNVTCVSEEHHQDFIIRNLSYS MKDNESMPANQEVVQYSYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMGSQAPIVVH CRNGSSESGIFICISLLWLRQKAEQRIDVFQTVKGLQSHRPMMFTRFEQYSFCYRALA DYISKTYR" ORIGIN 1 aaaatattcc gttcagcacc gtctctcaaa gtattcaaat ttctcctcat ctctttccga 61 atgatgggct tttaaattaa cgcggaaact gaaaaaatgc gaataaatcg atggatctgg 121 tgggccacgg tcattctttt gtatctcagg acgggattag cggccgattt cttcagatcg 181 agtgaggaaa atgatagaaa atcatcagac gatttggata attttaattc aactaaaatc 241 gaaccagata agccaaaaac tgcaaaagaa ctcggtgtaa aatcatgcga atcgaatcaa 301 gactgtgtac atgatggagt atgtcaccgt ggaaacgatg gtcatggaat atgtatgtgc 361 ccgagaagtt gtccagcaat tactccaaaa caatgcggat acaattaccg aacaccatcc 421 acatgtctac tcatggatgc tgattatcga tcgaaatatg atgtgaagga gccgacgtgt 481 tattcaagga aatgcgtctg cccaccacaa ttcgatgatg ttcatgttac ggcaaatcag 541 aagcctctgc ggttgaattc tactctactt ccaacgaaat gtgacaaaag agatctcgct 601 gttgtagccc gtgctcaccc atcgacgtca gtttcgaagg gaattgatgt caccttattc 661 tgctgcataa atgttgatcc ggaaggcttt attgatgttg ccagcgtatt tttcattcaa 721 aatggaacaa ttatgagaga agcaacatca cacccatttg cacctagaaa tggacttgct 781 cgacgggtac atgaaaaata ttcgtgttgg gagctggaaa ttaaaaatgc tcaaacttcg 841 gattctgggt cttatatgtg tcgggtcact gcgagtgctt cagatcttga cgttacggat 901 acaatgcagt ttgaggttaa agaacacgcc cgtcgtaccc attcatattg gtacaaacgt 961 ccgaaaaaag ttatgcctcc gtcgtcatcg tcatcactga aaacttcaga tgatgatgat 1021 gattctactc ctcgccaaat caagaatcta actgtaaatc catctgaacg agatgccatc 1081 gttacatggg aatccgaagg tggagaagac atggcaattg atttgagact tgttcgacgt 1141 acggataccc gaggacaagt ggttttcagt aaggacaact taacgtctcc agtttctata 1201 aaagatcttc gcgccgcgac tccgtacaca ctttttgtgt cggggaataa tggacaagta 1261 ccatttgagt tcactgaaca ctttactaca aaacagaaac gtccattccc accgaaagag 1321 gaggatgtgc gggtgctaaa ttctggttca gcattgagtt gtgaagttga atggaaaagt 1381 cccgcggagc caaatggtcg aattacaaaa tattttgtat ctgttcgtgg agcaatgcga 1441 aaatccgacg gatccctaac tccagatgat cttccagcag ctgtagaagt tgataaacgt 1501 tgtgcgaatt gggatggtga tgagaataca tcaaagcata atggaatcaa tccaattgat 1561 tttgcaaatg aattttattc ttgcaaattt ggtccattaa aaccaaatcg aaattatacc 1621 gtcactgttt gggctgaaaa ttcagctggg agatctctac cagcagtttt ccacaagaac 1681 tgtgttacga attacgcaca gccagatatg gtagaaacac cacaaccttt gctgtctaat 1741 aatcattcga cattctcgtt gacttttccc caaccgccag atgatattaa tgggccaata 1801 agctgctact atattgcaat agttccactt cctgcaaatg tttctctgga tatcttgcca 1861 aaatctgagg aaatagttat gcactcattt tcaaaagtct tcacgaacaa tctactccca 1921 tcgtcggctg aagagaaacg atttttcgct tacattgccg agtcgtatgt tcaattacca 1981 gaagaaacaa cgataggaga tggtgttaga gtgtctgatt taaaagcctg taatgtacag 2041 tacctcagtc gatattcgtc tgaagatctc gcattacggc gtgggctcaa gtacaccgga 2101 tttctaattg tacgtgtcga taaggaagaa gaattgaaca gaaaagatgt tcgaaatgga 2161 gctgatccga atatatttag gaatttaatt gacaaaagcg tatctccaac atcacgaacc 2221 cgtactgcat ctcccatgag ccgccacctg cgtcaacttc atttgagtgg gccagcgtat 2281 ggatattctg catacttcaa gccaatacta cttgacacgg aaagttcaag cagtggattc 2341 ggaattttca tgaaaattat tctgccgttc cttctgttct tagcatttgc aactggagtt 2401 acaatgttct ttgtaaaccg aaaaggacat atgctgtcaa cttggtgtcc attattcaca 2461 aaaatgacgt caaaagatgt tgtggaacga actcttctga aacagacatt tggtgcaatt 2521 ccagttgatg atcttccaac tgaatacgtt gttcgacatc gagacacgga ttttctgttt 2581 gcacaagaat acgaatctct gccacatttt caattggata ctgtagccag taatagaaaa 2641 gaaaatgcaa tcaaaaaccg atataacgac attcgtgcat tcgatgatac tcgagttaag 2701 ctgaagaaaa tcaacggaga cgattactcg gattatataa acgctaattt cattaaaagc 2761 tggaaagaaa agaagttatt cattgctgct caggctccag ttgacgccac tatcggagat 2821 ttctggagaa tggtgtggga acaagagtca tatttaattg tgatggttgc caatttaacc 2881 gagaaaaacc ggcagcaatg tgcaaagtat tggcctgatg aacagattac aagatatgga 2941 gatataatcg tggagcctgc cagtttttcg ttccattctg attatgcgat tcgtgcattc 3001 gatatcgcac atataggaga atgtgggcct gatgtgatcc cgaatggaaa cggcgtcgaa 3061 tacgcgaatg tgccaattgt aaaaggacaa tttgctaata attcccgtcg tattctccag 3121 tatcacttta ccaattggaa tgactacaaa gctccggaat gttccactgg attgcttcga 3181 ttcatgtatc gtcttcgaga attaccacag tttaataact cgcctgttgt gatacattgc 3241 agtgctggag ttggaagaac tggaacattt atttcaatag attcgatgct tgatcaatgt 3301 ctcgcggagg ataaagcaaa cattttcgaa ttcgtgtgca atcttcgtcg ccaacggaac 3361 ttgatggttc aatctcttga acaatatgtg ttcatctaca aagcacttgc ggaatggcac 3421 atgtatggtg atactgatga agatgttcga gattttgaag atcactatca acgattatgt 3481 gcatcgaata gagatagagc agttagcttt aatcaacagt catctacgaa tggatcaata 3541 tctccgagag tagcaattgt ctcatctcga gaatcaatga caacttccaa tggagaaact 3601 ggattggaag aagaattcaa aaagttggag cgaaatttga ctactccttt atcttcaaac 3661 tttgctgcaa aagacgagaa ccttcttaaa aatcgatatg aagctgcagt accttttgat 3721 aaatatcgag ttattcttcc tccaactatt ggacatgctg actcttcata tatcaatgca 3781 tcacacataa aaggatactt ttttgattat atagccgctc aggatcctgt ttcagaagga 3841 acagcttttg atttctggag aatgattgct gatcaaaatg tgactacggt agttatgttg 3901 agtgatgaga cagattggag tgatgttgaa aagtactggc caatcgatgg ttctggaaca 3961 gaatgtcact ttggatcgga acgtaattca gtgaatgtta cctgtgtctc tgaagagcac 4021 catcaagatt ttatcattcg aaatttatca tattctatga aagataacga atcgatgcca 4081 gcgaaccaag aagttgtaca gtattcgtat actggatggc cttcggattc aattgttcca 4141 aaatctgcga acagtttgat gaatctgatt gagatggtcc tgcaacgtca gagcagtctc 4201 atgggatctc aggctccgat tgtggtacat tgcagaaacg gatcgtcaga gagcggaatc 4261 ttcatatgca tttccttgtt atggctccga caaaaagctg aacaacggat agacgtcttc 4321 caaacagtaa aaggacttca atcacaccga ccgatgatgt ttacccgttt tgagcagtat 4381 tctttctgtt acagagccct agctgactat atctctaaga catataggta gctgttgtta 4441 tatttttcca tttatctctc tagtcacata atatagttgt tgccttcccc gttttagctg 4501 ttttctgggc acaaaaaatt caacaagcat acaaaaaacg ggtcaatgtt gtgctctctt 4561 ccatatttcc ctctcattac aaagttttac tcagttatgt tttttttcgt ttgtttcctc 4621 atgaattcta tttattaccc aatctctaat actagtcaat agtctattct acactccccg 4681 cctcaaccaa caccaccgac acacagaaac gagtatgcaa ctttcggatc cttctcaatg 4741 acttcagatg attttttttt cagatatttg ctcgaaagcc atattgttgc ctttttgaat 4801 tattatgtgt aaatatatat gatatctaaa tgaatttatt atgaattttg atgatgtt //