Dbfetch
LOCUS NM_001023860 4002 bp mRNA linear PLN 16-AUG-2024
DEFINITION Schizosaccharomyces pombe retrotransposable element/transposon
Tf2-type (Tf2-11), partial mRNA.
ACCESSION NM_001023860
VERSION NM_001023860.1
DBLINK BioProject: PRJNA127
BioSample: SAMEA3138176
KEYWORDS RefSeq.
SOURCE Schizosaccharomyces pombe (fission yeast)
ORGANISM Schizosaccharomyces pombe
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
Schizosaccharomycetes; Schizosaccharomycetales;
Schizosaccharomycetaceae; Schizosaccharomyces.
REFERENCE 1 (bases 1 to 4002)
AUTHORS Schafer,B., Hansen,M. and Lang,B.F.
TITLE Transcription and RNA-processing in fission yeast mitochondria
JOURNAL RNA 11 (5), 785-795 (2005)
PUBMED 15811919
REFERENCE 2 (bases 1 to 4002)
AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R.,
Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D.,
Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T.,
Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P.,
Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D.,
Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S.,
Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M.,
Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S.,
Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S.,
Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S.,
Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M.,
Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G.,
Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J.,
Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I.,
Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C.,
Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,
Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H.,
Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H.,
Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S.,
Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z.,
Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C.,
Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L.,
Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A.,
Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L.,
Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V.,
Ussery,D., Barrell,B.G. and Nurse,P.
TITLE The genome sequence of Schizosaccharomyces pombe
JOURNAL Nature 415 (6874), 871-880 (2002)
PUBMED 11859360
REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to
Cerutti L]]
REFERENCE 3
AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R.,
Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D.,
Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T.,
Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P.,
Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D.,
Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S.,
Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M.,
Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S.,
Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S.,
Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S.,
Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M.,
Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G.,
Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J.,
Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I.,
Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C.,
Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,
Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H.,
Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H.,
Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S.,
Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z.,
Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C.,
Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L.,
Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A.,
Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L.,
Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V.,
Ussery,D., Barrell,B.G. and Nurse,P.
TITLE The genome sequence of Schizosaccharomyces pombe
JOURNAL Nature 415 (6874), 871-880 (2002)
PUBMED 11859360
REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to
Cerutti L]]
REFERENCE 4 (bases 1 to 4002)
AUTHORS Trinkl,H., Lang,B.F. and Wolf,K.
TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in
the mitochondrial genome of the fission yeast Schizosaccharomyces
pombe
JOURNAL Nucleic Acids Res 17 (16), 6730 (1989)
PUBMED 2780299
REFERENCE 5 (bases 1 to 4002)
AUTHORS Lang,B.F., Cedergren,R. and Gray,M.W.
TITLE The mitochondrial genome of the fission yeast, Schizosaccharomyces
pombe. Sequence of the large-subunit ribosomal RNA gene, comparison
of potential secondary structure in fungal mitochondrial
large-subunit rRNAs and evolutionary considerations
JOURNAL Eur J Biochem 169 (3), 527-537 (1987)
PUBMED 2446871
REFERENCE 6 (bases 1 to 4002)
AUTHORS Lang,B.F., Ahne,F. and Bonen,L.
TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces
pombe. The cytochrome b gene has an intron closely related to the
first two introns in the Saccharomyces cerevisiae cox1 gene
JOURNAL J Mol Biol 184 (3), 353-366 (1985)
PUBMED 4046021
REFERENCE 7 (bases 1 to 4002)
AUTHORS Lang,B.F.
TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces
pombe: highly homologous introns are inserted at the same position
of the otherwise less conserved cox1 genes in Schizosaccharomyces
pombe and Aspergillus nidulans
JOURNAL EMBO J 3 (9), 2129-2136 (1984)
PUBMED 6092057
REFERENCE 8 (bases 1 to 4002)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2024) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 9
AUTHORS Wood,V. and Rutherford,K.
CONSRTM PomBase
TITLE Direct Submission
JOURNAL Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins
building, Tennis Court Rd, Cambridge, United Kingdom
REFERENCE 10
AUTHORS Wood,V.
CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2007) European Schizosaccharomyces genome
sequencing project, Sanger Institute, The Wellcome Trust Genome
Campus, Hinxton, Cambridge CB10 1SA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. This record is derived from an annotated genomic
sequence (NC_003423).
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..4002
/organism="Schizosaccharomyces pombe"
/mol_type="mRNA"
/strain="972h-"
/db_xref="taxon:4896"
/chromosome="II"
gene <1..>4002
/gene="Tf2-11"
/locus_tag="SPOM_SPBC1289.17"
/gene_synonym="SPBC8E4.11c"
/db_xref="GeneID:2540036"
/db_xref="PomBase:SPBC1289.17"
CDS 1..4002
/gene="Tf2-11"
/locus_tag="SPOM_SPBC1289.17"
/gene_synonym="SPBC8E4.11c"
/codon_start=1
/product="retrotransposable element/transposon Tf2-type"
/protein_id="NP_596839.1"
/db_xref="GeneID:2540036"
/db_xref="PomBase:SPBC1289.17"
/translation="MSYANYRYMKARAKRWRPENLDGIQTSDEHLINLFAKILSKHVP
EIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFSEN
GSLTWQELLRQPGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLF
ILWMLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKNLGKEFLPK
KNNTTNSRNLRKTNISRIEYSSNKFLNHTRKRYEMVLQAELPDFKCSIPCLIDTGTQA
NIITEETVRAHKLPTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKF
SHPAAISFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEK
LPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINAC
PVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYH
LIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMD
NILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQ
ENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQ
TQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSA
KMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPEN
KRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISI
TDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRT
IIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYG
PLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTA
RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT
NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL
PSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK
TGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSE
LNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQADKA
IVNDYIKNNNLNI"
ORIGIN
1 atgtcctacg caaattatcg ttatatgaaa gcaagagcaa aacgatggag accagagaat
61 ttggatggaa ttcaaacatc agacgaacat ttaataaacc tttttgcaaa aatattatcg
121 aagcatgtac cagagatagg gaaattcgat cctaataagg atgttgaaag ttacatttca
181 aaacttgatc aacactttac tgaataccct tcattattcc caaatgagca tactaaaaga
241 cagtatacat tgaatcacct agaagaatta gagcaacaat tcgctgaacg catgttttct
301 gagaatggaa gtcttacatg gcaagaatta ctcagacaac cagggaaagt acaaggatcc
361 aacaaaggtg atcgtttaac taaaacattt gaaggtttta gaaatcaatt ggacaaagtt
421 caatttataa ggaaactcat gtcaaaggca aatgttgatg atttccatac tcgcttgttt
481 atattatgga tgctgccata ttccttaagg aaattaaagg aaagaaatta ctggaaatcg
541 gaaatcagtg aaatttatga ctttttagag gacaaaagaa cagcctcgta tggtaaaact
601 cacaagcgtt ttcaaccgca aaataaaaat ctaggaaaag agttccttcc aaagaaaaat
661 aacaccacta atagcagaaa cctgaggaag acaaatattt cgagaataga atactcatct
721 aacaaattcc taaatcatac taggaaacgt tacgaaatgg tattacaagc tgaacttcca
781 gacttcaagt gctcaatacc ctgtctaatc gatacgggca ctcaagcaaa tattataaca
841 gaagaaactg ttcgagcaca taaactgcct accagaccct ggtcaaaaag tgtgatatat
901 ggtggagttt atccaaataa gattaatcgc aaaacaataa aacttaacat aagtctaaat
961 ggaatatcaa tcaaaacaga attcttggtt gtaaagaaat tttcgcatcc agctgctatc
1021 tccttcacaa cattatatga caataacatt gaaatatcta gcagtaaaca cacgctctct
1081 caaatgaaca aagtttcaaa tattgtcaag gaacctgagt taccagatat ctataaagaa
1141 ttcaaagaca ttactgcaga aaccaatacg gaaaagctac caaagccaat aaaagggtta
1201 gaatttgaag ttgaactaac tcaagaaaac tacagattac ctatcagaaa ttacccgcta
1261 ccaccgggaa aaatgcaagc tatgaatgat gaaattaatc aaggattaaa aagtggaatt
1321 atacgagaat ctaaagccat taacgcctgt ccagtaatgt tcgttccgaa aaaggaaggc
1381 accttgagaa tggtggttga ctacaaacct ttaaataagt atgtcaaacc caatatatat
1441 ccgttaccac ttattgaaca attacttgct aaaatacaag gttctacaat ttttactaaa
1501 cttgacctca aaagtgccta tcacttgata cgagtaagaa aaggagatga acataaactt
1561 gcttttcgct gtcctcgtgg agtttttgaa tatctagtaa tgccttatgg catatctata
1621 gctccagcac attttcaata ctttatcaat acaatacttg gtgaagtcaa agaatcgcat
1681 gtagtatgtt atatggataa tattttaatt cattcaaaat cggaatctga acatgtaaaa
1741 catgttaaag acgttctaca gaaattaaaa aatgcgaact taattatcaa tcaagcaaaa
1801 tgtgaatttc atcaatcaca agtaaaattt atagggtatc acatttcgga aaaaggattt
1861 acgccttgtc aagaaaatat agacaaagtc ttacaatgga agcaacctaa gaatcgtaaa
1921 gaattacgac aatttctagg ttctgtcaat tatcttagga aattcattcc aaagacatca
1981 caattaacac atccactcaa taatcttttg aaaaaggatg tacgctggaa atggacacca
2041 acacaaaccc aagcgataga aaacattaaa caatgtttag tttctcctcc ggtgctacga
2101 cactttgatt tcagtaaaaa gattctacta gaaactgatg cttcagatgt cgctgtagga
2161 gccgtattgt ctcaaaaaca tgatgatgat aaatactatc ctgttggata ctattcagca
2221 aagatgtcta aagcacaatt aaattatagc gtatcggaca aagaaatgct tgcaatcatt
2281 aagtctctca aacattggag acactattta gaatccacta tcgaaccttt caaaatttta
2341 acagaccatc gaaacttaat tggtcgcatt actaacgaat ccgagcctga aaacaaacgt
2401 ttagctcgtt ggcaattatt tttacaagac ttcaactttg aaattaacta cagacctgga
2461 tcagcaaatc acatagctga tgccttatcc agaattgttg acgaaacaga accaattcca
2521 aaagattcag aagacaatag tatcaacttt gttaatcaaa tctcgataac cgatgatttt
2581 aaaaaccaag tggttacaga atatacgaat gatacaaaat tgttgaattt actaaacaat
2641 gaagacaaac gagtagaaga gaatatccaa ctcaaagatg gcttactaat taacagtaaa
2701 gaccaaatct tattacctaa tgatactcag ctgactagga caattattaa aaagtatcat
2761 gaagaaggta aattgattca tccaggcatt gaacttctta caaacattat attacgtaga
2821 tttacgtgga aaggaataag aaaacaaata caagaatatg tacagaactg ccatacatgt
2881 caaataaaca aatctaggaa tcataaacct tatggacctt tacaaccaat tcccccatca
2941 gaaagacctt gggaatcttt atcaatggat tttattacag ctttaccaga atcatctggt
3001 tataatgcac ttttcgtggt agttgaccga ttttcaaaaa tggcaatctt agtaccttgt
3061 acgaaatcca ttacagcaga gcaaacagct cgaatgtttg atcaacgagt tattgcttat
3121 ttcggcaatc caaaagaaat cattgcagat aatgatcata tttttacttc ccaaacgtgg
3181 aaagatttcg cacataaata taatttcgtt atgaaatttt cgttaccata cagaccacaa
3241 actgatggac aaactgagcg tacaaaccaa actgtggaga aattactaag atgtgtatgt
3301 agcacacatc caaatacatg ggtagatcat atatccctag tgcaacaatc ttacaacaat
3361 gcgatacatt cagcaactca aatgacacct tttgagatag tacatcgcta ttcaccagct
3421 ttatcacctt tagagttacc tagctttagt gacaaaactg acgaaaactc tcaggaaacg
3481 atccaagtat ttcaaacagt taaagaacac ttgaatacaa acaacataaa gatgaaaaag
3541 tatttcgata tgaaaataca agaaattgaa gaatttcaac ctggagacct agttatggtc
3601 aaaagaacga aaacaggttt tcttcataaa tccaataaat tagcacctag ttttgcagga
3661 ccgttctatg tgttacagaa gtcgggtcca aacaactatg aattggatct tccagattca
3721 atcaagcaca tgttttcatc tacttttcat gtttctcacc tagaaaagta tcgacataat
3781 tcagaactca attacgctac cattgatgag tctgatattg gaacaattct tcatatccta
3841 gaacataaaa acagagaaca agtactctac ttaaatgtca agtacatttc gaatctaaat
3901 ccgagtacta ttatgtcagg atggactaca ttagctacag cgctacaagc ggacaaagca
3961 attgtcaatg attatattaa aaacaataat ctaaatatct ga
//