Dbfetch
LOCUS NM_001022302 3219 bp mRNA linear PLN 16-AUG-2024 DEFINITION Schizosaccharomyces pombe proteasome regulatory subunit Rpn2 (rpn2), mRNA. ACCESSION NM_001022302 VERSION NM_001022302.3 DBLINK BioProject: PRJNA127 BioSample: SAMEA3138176 KEYWORDS RefSeq. SOURCE Schizosaccharomyces pombe (fission yeast) ORGANISM Schizosaccharomyces pombe Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces. REFERENCE 1 (bases 1 to 3219) AUTHORS Schafer,B., Hansen,M. and Lang,B.F. TITLE Transcription and RNA-processing in fission yeast mitochondria JOURNAL RNA 11 (5), 785-795 (2005) PUBMED 15811919 REFERENCE 2 (bases 1 to 3219) AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. and Nurse,P. TITLE The genome sequence of Schizosaccharomyces pombe JOURNAL Nature 415 (6874), 871-880 (2002) PUBMED 11859360 REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to Cerutti L]] REFERENCE 3 AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. and Nurse,P. TITLE The genome sequence of Schizosaccharomyces pombe JOURNAL Nature 415 (6874), 871-880 (2002) PUBMED 11859360 REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to Cerutti L]] REFERENCE 4 (bases 1 to 3219) AUTHORS Trinkl,H., Lang,B.F. and Wolf,K. TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in the mitochondrial genome of the fission yeast Schizosaccharomyces pombe JOURNAL Nucleic Acids Res 17 (16), 6730 (1989) PUBMED 2780299 REFERENCE 5 (bases 1 to 3219) AUTHORS Lang,B.F., Cedergren,R. and Gray,M.W. TITLE The mitochondrial genome of the fission yeast, Schizosaccharomyces pombe. Sequence of the large-subunit ribosomal RNA gene, comparison of potential secondary structure in fungal mitochondrial large-subunit rRNAs and evolutionary considerations JOURNAL Eur J Biochem 169 (3), 527-537 (1987) PUBMED 2446871 REFERENCE 6 (bases 1 to 3219) AUTHORS Lang,B.F., Ahne,F. and Bonen,L. TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene JOURNAL J Mol Biol 184 (3), 353-366 (1985) PUBMED 4046021 REFERENCE 7 (bases 1 to 3219) AUTHORS Lang,B.F. TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans JOURNAL EMBO J 3 (9), 2129-2136 (1984) PUBMED 6092057 REFERENCE 8 (bases 1 to 3219) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 9 AUTHORS Wood,V. and Rutherford,K. CONSRTM PomBase TITLE Direct Submission JOURNAL Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins building, Tennis Court Rd, Cambridge, United Kingdom REFERENCE 10 AUTHORS Wood,V. CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JUN-2007) European Schizosaccharomyces genome sequencing project, Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_003423). On Jun 21, 2024 this sequence version replaced NM_001022302.2. FEATURES Location/Qualifiers source 1..3219 /organism="Schizosaccharomyces pombe" /mol_type="mRNA" /strain="972h-" /db_xref="taxon:4896" /chromosome="II" gene 1..3219 /gene="rpn2" /locus_tag="SPOM_SPBC17D11.07C" /db_xref="GeneID:2540191" /db_xref="PomBase:SPBC17D11.07c" CDS 72..2969 /gene="rpn2" /locus_tag="SPOM_SPBC17D11.07C" /codon_start=1 /product="proteasome regulatory subunit Rpn2" /protein_id="NP_596381.1" /db_xref="GeneID:2540191" /db_xref="PomBase:SPBC17D11.07c" /translation="MTMVYSDNTSIITSAGGLMALLDEQERELQVHALLKIYEFIDQL WPEISDDVTKIEVMYEDHSFPERELAALVVSKVYYYLGEYDEALLFALSSGPKFLHDK NSDYKETLIFKCIDMFIHKSAELYKNPKADPLDERLSGVVEGIFQKCYAKNEWRHVLG IAIEAHRLDIIEYILNADKETDLKPYVLELAMTVVLDIEFRNRLLRLLLSSFLTETEP DYFSVGKCVVHLNDASVAAKLLMKLSSQNDDKSLLTAYQLAFDLEDSAPQEFLNSVMD LLPSPSVANSEEDANADSKKEDSSPCGYIIRILSGEQTVKYDREFLYAHNNTDMLILN RTKDSLEARNSVFHNAVTFANAFMNFGTSSDSFFRDNLSWLSKANNWSKFTATAALGV IHRGYYNQAMNILRPYLPEEDAPSSSTYSEGGAFYAMGLIHANHGRGVTEYLREQLKH TEDEIVQYGLLLGIGLTGMASRDETLYESVKTILFNDNAVAGSAAGISMGLIMLGTAS SAAIDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGIIKELNNDLDPTLRYAGM FATALAYCGTSNSKIVRDVLHISVSDVNDDVRRAAVCALGFICFKDPNALISTVELLV DSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVEDATDFVRQGAMIAQAMILTQHN DQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTIALQTATGSLKL SAIVGLTVFLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRPKLFAYPP KSVQPTAKTVQKVETAVLSTTVKAQARAKRAEREKASKGSNDDEMKIDKKTTEEKEAT PMEMDEEKSQDISINGNSKKEEPKSETLENFTRVVPAQLPYISFNLNGRYYPVRKFTG GVLMLIDRESDKAPDLIELNRDAVPASADTEPGEQEASPPEDFEYPFDDDD" ORIGIN 1 accaacaacg aaacaccacc tgctgttata tagtttgtaa gatttaaata aacaggtcta 61 gtttcgtcga aatgactatg gtgtactctg ataacacctc tattataacg tcagcaggtg 121 gtttgatggc cctgctggac gagcaagagc gagaattaca agtacatgct ttactaaaaa 181 tttatgagtt tattgatcaa ttatggccgg aaatatcgga tgatgttacg aaaattgagg 241 ttatgtatga ggaccattca tttcctgaac gcgaattagc agccttggta gtctcaaaag 301 tttattatta ccttggagaa tatgatgagg ctcttttgtt tgccttgtca agtggtccaa 361 agtttttgca tgacaaaaat agtgattaca aagaaacact aattttcaaa tgtattgata 421 tgtttattca taaaagtgca gagttgtaca aaaatccaaa ggctgacccc ttggacgaga 481 gactaagtgg cgtagtcgag ggcatttttc aaaaatgtta tgctaaaaac gaatggagac 541 atgttttggg aattgctatc gaggctcatc gacttgacat tattgaatac attttaaatg 601 cagacaaaga gacagattta aagccttatg tactggaact tgcaatgact gttgttttag 661 acattgaatt ccgaaaccgc ttacttcgtc tattactaag ttcttttctg acagaaacag 721 aacctgatta tttctcagtt ggaaaatgcg ttgttcattt gaacgatgcc tctgttgcag 781 ccaaactttt aatgaaacta tcttctcaaa acgatgacaa aagcttattg acagcgtatc 841 aattagcctt tgatcttgaa gattcggctc cacaagagtt tttaaatagt gtgatggatt 901 tgcttccttc tccctctgtg gccaattccg aagaggacgc taacgctgat tcgaaaaagg 961 aggattcttc tccttgtggt tatattattc gaattttgtc tggtgaacaa accgttaaat 1021 atgaccgtga atttttatat gcacataaca atacggatat gcttattctg aacaggacga 1081 aagattcttt agaagccagg aactcggttt ttcataatgc agttacgttc gccaatgcgt 1141 tcatgaactt cggtacttcc tcggatagtt tcttccgcga caacctttcc tggttatcca 1201 aggccaacaa ctggtcaaaa tttactgcaa cagctgcatt gggtgtcatc catcgaggat 1261 attataatca agctatgaac attcttcgtc cttatctgcc ggaagaagat gcgccatcaa 1321 gctctactta ttctgaaggt ggtgctttct atgccatggg gttgattcat gctaatcatg 1381 gaagaggtgt tactgagtat ctgcgcgaac aactgaaaca taccgaagat gagattgttc 1441 agtatggtct cttacttgga attggcctaa cgggcatggc tagtagggac gaaacccttt 1501 atgaatctgt taagactatc ctttttaacg ataatgccgt ggctgggtct gccgctggta 1561 tatccatggg tctcataatg cttggtacag cttcttctgc cgccattgat gaaatgttgc 1621 agtatgcaca tgagacgcag catgagaaga ttattcgagg tttgggcatc ggtattgcat 1681 taattgttta tggacgtcag caagaagctg acggtataat taaagaactg aataatgatt 1741 tggaccctac tctccgttat gcaggcatgt tcgctaccgc tttggcttat tgtggtacaa 1801 gcaatagcaa aatagttaga gacgtacttc atatctcagt tagtgatgtc aatgatgatg 1861 ttcgtcgtgc tgcagtttgt gctttaggtt ttatctgttt caaggatcct aacgctctga 1921 tttcaacggt tgagctgctc gttgatagtt ataaccctca tgttagatat ggtagtgcaa 1981 tcgctttagg aattgcctgt gcaaactcgg ggtccaatgc tgcactagat ttattgagcc 2041 gccttgttga agatgcaacg gattttgttc gccaaggtgc catgattgct caagcaatga 2101 ttctcactca acacaacgat caattgaata gtaaggtttc tggaattcga aaacattttg 2161 aacaagtcat caacgaaaaa catgaagacg cgcttgctaa attgggcgca acattggctc 2221 aaggtattat tgatgccggc ggtcgtaacg ttactattgc tcttcagaca gctactggta 2281 gtttgaaatt gtctgcaatt gttggattaa ctgtttttct tcaatattgg tactggtttc 2341 cactcacgca ttttatgtct ctttccttct cacctactgc gctgataggt ctggataaaa 2401 acttgaatgc acccaaattt tcttttattt caaatgttcg tcctaaactg tttgcctatc 2461 ctccaaagtc cgtacaaccc actgctaaaa cggtccaaaa agttgaaact gccgtgctct 2521 ctactacagt caaagctcaa gcacgtgcca agcgtgctga acgtgaaaaa gccagtaaag 2581 gttcaaatga tgacgaaatg aaaatcgaca aaaagacaac tgaagagaaa gaggccactc 2641 cgatggaaat ggatgaagaa aaaagtcagg atataagcat caacggcaac tctaaaaaag 2701 aagaacctaa gtctgaaact ttagagaact tcacgcgggt tgttcctgct cagcttccat 2761 atatttcatt taaccttaat ggccgttatt atccggttcg caaatttacc ggtggtgttc 2821 ttatgcttat cgatcgtgag tctgataaag ctccagattt aattgaactg aatagagacg 2881 ctgtacctgc tagtgcagat acagagcctg gtgaacagga ggcctctcct cctgaagatt 2941 ttgaataccc atttgatgat gatgattaga ttcccagaag tacatcctgc tagtctcaaa 3001 aaaccatata cgtttgtaag aacatcttga ttgttacttg catctcttca gattaaatac 3061 aaacgttttc atatgttaat agacttgtag tttgaagtta acgtatttat tctacggaac 3121 tgagtgttcg gaagattgct agacaatttc attttgatga taaatttaaa aagttttcaa 3181 ttacgttttt taaattaaat atcatgtttt ttacgttga //