Dbfetch

Dbfetch

ID   HLA02686; SV 1; standard; DNA; HUM; 822 BP.
XX
AC   HLA02686;
XX
SV   HLA02686.1
XX
DT   27-SEP-2006 (Rel. 2.15.0, Created, Version 1)
DT   06-OCT-2006 (Rel. 2.15.0, Last Updated, Version 1)
XX
DE   HLA-C*16:09, Human MHC Class I sequence (partial)
XX
KW   Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*16:09;
XX
OS   Homo Sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates;
OC   Catarrhini; Hominidae; Homo.
XX
CC   --------------------------------------------------------------------------
CC   IPD-IMGT/HLA Release Version 3.57.0
CC   --------------------------------------------------------------------------
CC   Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative
CC   Commons Attribution-NoDerivs License, see;
CC   http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details.
CC   --------------------------------------------------------------------------
CC   The sequence below is the official allele sequence as approved by the
CC   WHO Nomenclature Committee for Factors of the HLA System.
CC   Any cross references may differ from the sequence shown below.
CC   --------------------------------------------------------------------------
XX
RN   [1]
RP   1-822
RX   PUBMED; 17389029.
RA   Canossi A, Liberatore G, Del Beato T, Oumhani K, Adorno D;
RT   "Sequence based-typing characterization of the novel HLA-Cw*1609 allele in
RT   the Moroccan Chaouya group.";
RL   Tissue Antigens 69:367-370(2007).
XX
DR   EMBL; DQ916147; DQ916147.1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..822
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT                   /ethnic="Greater Middle Eastern"
FT                   /cell_line="E355"
FT   CDS             join(<1..270,271..546,547..822)
FT                   /codon_start=3
FT                   /partial
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*16:09"
FT                   /product="MHC Class I HLA-C*16:09 sequence"
FT                   /translation="SHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGE
FT                   PRAPWVEQEGPQYWDRETQKYKRQAQTDRVNLRKLRGYYNQSEAGSHTLQWMYGCDLGP
FT                   DGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQRAYLEGTC
FT                   VEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLTWQRDGED
FT                   QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRW"
FT   exon            1..270
FT                   /number="2"
FT   exon            271..546
FT                   /number="3"
FT   exon            547..822
FT                   /number="4"
SQ   Sequence 822 BP; 171 A; 255 C; 285 G; 111 T; 0 other;
     gctcccactc catgaggtat ttctacaccg ccgtgtcccg gcccggccgc ggagagcccc        60
     gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagtccaag aggggagccg cgggcgccgt gggtggagca ggaggggccg cagtattggg       180
     accgggagac acagaagtac aagcgccagg cacagactga ccgagtgaac ctgcggaaac       240
     tgcgcggcta ctacaaccag agcgaggccg ggtctcacac cctccagtgg atgtatggct       300
     gcgacctggg gcccgacggg cgcctcctcc gcgggtatga ccagtccgcc tacgacggca       360
     aggattacat cgccctgaac gaggacctgc gctcctggac cgccgcggac acggcggctc       420
     agatcaccca gcgcaagtgg gaggcggccc gtgcggcgga gcagcagaga gcctacctgg       480
     agggcacgtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag acgctgcagc       540
     gcgcggaaca cccaaagaca cacgtgaccc accatctcgt ctctgaccat gaggccaccc       600
     tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg cagcgggatg       660
     gcgaggacca aactcaggac accgagcttg tggagaccag gccagcagga gatggaacct       720
     tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac acgtgccatg       780
     tgcagcacga ggggctgccg gagcccctca ccctgagatg gg                          822
//