Dbfetch
ID OY986027; SV 1; linear; genomic DNA; STD; HUM; 7342 BP. XX AC OY986027; XX PR Project:PRJEB71396; XX DT 26-DEC-2023 (Rel. 144, Created) DT 27-DEC-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens HLA-DQA1 gene for MHC class II antigen, allele DE HLA-DQA1*02:01:01:NEW XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA French A.; RT ; RL Submitted (19-DEC-2023) to the INSDC. RL Anthony Nolan Research Institute, Anthony Nolan Research Institute, 77C RL Fleet Road, Hampstead Heath, United Kingdom XX DR MD5; fb7b8dbd750d388c052088a468e56aec. XX FH Key Location/Qualifiers FH FT source 1..7342 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="AN302944" FT /db_xref="taxon:9606" FT CDS join(732..813,4508..4753,5166..5447,5800..5954) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAK6681858.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQFTHEFDGDEEFYVDLERKETVWKLPLFHRLRFDPQFALTNIAVLKHNLNILIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" FT exon 732..813 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /number=1 FT intron 814..4507 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /number=1 FT exon 4508..4753 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /number=2 FT intron 4754..5165 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /number=2 FT exon 5166..5447 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /number=3 FT intron 5448..5799 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /number=3 FT exon 5800..5954 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02:01:01:NEW" FT /number=4 XX SQ Sequence 7342 BP; 2153 A; 1585 C; 1554 G; 2050 T; 0 other; ttgtaaccca gaaaatcctg aaggatgcca tataattgat gacctcatct atccatgagg 60 ctgctcagaa atgcccaccc ctggccaggc gcggtggctc atgcctgtaa tccaagcact 120 ttgggaggct gaggcaggca gatcacgagg tcaggagttc aagaccagcg tggccaacat 180 agtgaaactc tgtctctact aaaaatacag aaattagccg ggcatggtgg caggcacctg 240 cagtcccagc tacttgggag ggtgaggcag gagaatcgct tgaacccggg aggcaaaggt 300 tgcagtgagc cgagaccatg ccattgtacc tcagcctggg tgacagagtg agactacgtc 360 tcgaaaaata aagaaaaaga aaagaaaaag aaaaaaaaag aaaaattccc atcccttttg 420 cgaatggcag acatgcacac accagagaag attccaattt agtgtcttcc ctctcttcat 480 agaacaattc ctcaagtcca ctctgagtag aggctgcatc acaacaaggg gattgccctg 540 tctccttcca gggctcttaa tagaaactct tcaactagta actgagatgt caccatgggg 600 gatttttcta attggccaaa acctgacttg gcagggtttg gtttgggtgt cttcagattt 660 ccttgtcttg aggtcctcac aattactcta cagctcagaa cagcaactgc tgaggctgcc 720 ttgggaagaa gatgatccta aacaaagctc tgatgctggg ggccctcgcc ctgaccaccg 780 tgatgagccc ttgtggaggt gaagacattg tgggtgagtg cgtgagtgag gaatgttctc 840 tggagctgaa aaacagtaaa ttgaaggaaa agagagaaag cgatttgcag agaaattgta 900 gagatttcct aagacccctt tcagtattaa gagaattaaa aattatagct gttcctcctt 960 caggaaacca gagccccaac ctactctttt tgttatgtat gcttttgtgt tcactaagga 1020 tgctattctg tttatattat attcagtgac tacagcctgg aggtctctat gtcattccat 1080 catgattgcc tcaaaaatta gtgaggtttc catcagtgga taatttttta ttattaaaaa 1140 tgtatgaagt gtcattctca aatttccctg aacaactttt gaagattttc ggatgtctcc 1200 tgtagtagat cttggggtcg ttccatcaat tatatactct atagatatta aaaaagttgc 1260 ccgtttcttt ctctcagact tactcacatt tccacatggg aactggcaca ggtggggagt 1320 aggtaaagga gtccagcagg ctgaatgcct tcaacaatca ttttaccaca tggtcctcac 1380 ttactctcag ctgcctcata tgtgtcacct cacaaataat caaataaaat gggcatgtag 1440 ctaagctttg taaatagtga aaacatggat gtcaattgtt tttacatatt tctattacag 1500 gtatagcttc acatttcttt tctttagcaa aataagggat ccttttagtt taaaattgag 1560 aagtagaaaa aattggtaaa ttaaatcatt ttattctcaa attatcaacc caaattacct 1620 gttcttcacc tcatctaata aagtcctata aaaagaaaag tgggccagac atggtggctc 1680 atgcctgtaa tcccagcact ttgggaggcc gaagcaggag gatcatttga gcctgggagt 1740 ttgagaccag cctgggcaac acagcaagac ctcatctcta ccaaaaaata aaataaaaat 1800 tagccaggca tggtagtgca tgcctgtggt gccagctact cagaaggctg cagtgggagg 1860 agcacttgag tccaggaggt ggaagctgca gtgagccatg atggcaccac tacactccag 1920 ccagggcaac agagagagac cctatctcaa aaagaaagcg gaaagaaaga gagaaaggaa 1980 ggaaagaagg aaagaaggaa gcaaggaagg agaaagggaa gggaagaaag aagaaagaaa 2040 gaaagaaaac agaaggaagg aagcacagat taattatttg gtctcttagt ctcctctgcc 2100 tttgtcgtcc atctcttccc acctctcttc atgcattcct ttctccctct tccctttcag 2160 gatccatctc tgactccctg ctcctttata gagatggaca tgagtttgta aaacaaaagt 2220 tgaaaagtca gatagttaaa aggggaagta aactggaagg tactctaaac tttcacaacc 2280 ttattaaccg tggcagctcc cattctgatt ttgttcagca gtggaagttt caccctctcc 2340 tccagagcgc ttggcttctt tgttccaaat ttcctttctt cagcctcaca ccagagtgcc 2400 ctggtcaggc tcagctcatc cattaggcac aatgtgggca gtgcagggga acctccatac 2460 tgtaaagcca catgagaatg ttttaactcc ttttaaaatt ataaaaaaat gaaattgtag 2520 agcctaagaa aatgttttaa cttttaattc agcctatatt atattgtctt tataccaatt 2580 cagtcataaa atataatttt ccatattttt atggaggaag gcgtccacac aagcaagagt 2640 gcttggggct cacatgtcag aacgcatccc tgatcatggc tgatcctgac cttcgtgtgg 2700 ttctgctaac tatgtgcctg tcagtcttcc ccaaaatcta tgtggtcctc aaatataaca 2760 actgtcattc aatacacatg tttgagcacc cagtgagcta agttttaagg attcaaagat 2820 gaaaagtcat gctgtctccc ctgcagaggg tgctcagact agtgatggaa acagtatggg 2880 atgaaagaaa gcagaaggcc attgctgagc aggcagtgga ctcagcagag gctgaaacta 2940 tacaagtgac ttggttccag ctgggccagc aggataacca gacgaaaaga aggattgcat 3000 atattccata tatatttatg tttgaacaaa gagtcaaggt ttattgcaag gataaggagg 3060 ctttgttggt ggcctgttaa gaccatccag cgtggtcata ctggataggg aagaaggtga 3120 gctggaagag ggatagacaa acttggatgg ccagatgttg agatggagga gctggaggtc 3180 ataacgtggt caaaaacatg ttgatgagag gacttagcta caaagttgtt aacttaagca 3240 gaaacctcaa ggattgattt tatgatttct ccaggaagtc ctaaaagata atttcatttc 3300 agggaggaaa acaacagacc actgcaaaga ccaggaacat gaaaggataa tgtagtttgg 3360 tttgcttggc agatacttgt gaaagatgtt ggactgtaag gctgtcaata tcctcctcgc 3420 agaacttact acagtacatt gtatctgctc ccttacctac ctgactctcc cactattcag 3480 tttgttcctt aatggtagac catgcctgat tggtgtttta cacttcccct gctatgtctg 3540 atacttgtgg atgctcagaa agtggggaag gaaggaaaga tacgatggta aaaggcttac 3600 acatgtcttg accagaatgt tcagtttggc tcatttggct ggagtcatac tgcatggctg 3660 ccattctgct ctggcatcct cagagaagca cactgcccat tagaggaaaa agggtgaata 3720 taaatgttga gtcagaacac tgcagacatt tagtaacctc cttcagagga aaaaaagggt 3780 ggggggaatg acagaaatcc aaaaactagt agagcttcca ctttttcatt tcagaagaaa 3840 tcagttactc tcctctaagg accattacta ttaacaaaac agagacctta gaaggaagca 3900 ttatttattt atcatatatt ttgtaatgtt attaccgttc ttgttatact ctttcttata 3960 ccctaccatt gttagcagaa attattttaa attaataaga tcctgcatgc ttttcctttt 4020 tctaaaaaaa gaaagatctc tgtgtagaat gtcctgttct gagccagtcc tgagaggaaa 4080 ggaagtataa tcaatttgtt attaactgat gaaagaatta agtgaaagat aaaccttagg 4140 aagcagaggg aagttaatct atgactaaga aagttaagta ctctgataac tcattcattc 4200 cttcttctgt tcatttacat tatttaatca caagtccatg atgtgccagg cactcaggaa 4260 atagtgaaaa tcggacacgc gatattctgc ccttgtgtag cacacactgt agtgggaaag 4320 aaagtgcact tttaactgga caactatcaa cacgaagagg ggaggaagca ggggctggaa 4380 atgtccacag actttgccaa agacaaagcc cataatattt gaaagtcagt ttcttccatc 4440 attttgtgta ttaaggtttt ttattctcct gttctctgcc ttcctgcttg tcatcttcac 4500 tcatcagctg accacgttgc ctcttacggt gtaaacttgt accagtctta cggtccctct 4560 ggccagttca cccatgaatt tgatggagac gaggagttct atgtggacct ggagaggaag 4620 gagactgtct ggaagttgcc tctgttccac agacttagat ttgacccgca atttgcactg 4680 acaaacatcg ctgtgctaaa acataacttg aacatcctga ttaaacgctc caactctacc 4740 gctgctacca atggtatgtg tccaccattc tgcctttctt tactgatcta tccctttata 4800 ccaagtttca ttattttctt tccaagaggt ccccagatct tctcatggca attgctgaaa 4860 ttttatcatt tctcatctct aaaatcacat atccccatgt aatacaaggg tctttccatt 4920 atgcattcat taaatcattc taggagaggt ctcatcaacc tcctacttta ttaaacatgc 4980 ccacagagag aagggcacag gagtaaagca gaggcaatgt gtcattgctc ccaagtagaa 5040 ggtaaataag gcctctttga ccagcaggag aggaaatgct ggtaggaaga ctcttccagg 5100 atgtaatgca gaagctcagg gcagagctat tcacacttca caccagtgct gtttcctcac 5160 catagaggtt cctgaggtca cagtgttttc caagtctccc gtgacactgg gtcagcccaa 5220 caccctcatc tgtcttgtgg acaacatctt tcctcctgtg gtcaacatca cctggctgag 5280 caatgggcac tcagtcacag aaggtgtttc tgagaccagc ttcctctcca agagtgatca 5340 ttccttcttc aagatcagtt acctcacctt cctcccttct gctgatgaga tttatgactg 5400 caaggtggag cactggggcc tggatgagcc tcttctgaaa cactggggta aggatgagtt 5460 tcaccatttt ttgatgcttt cttgtctgtc aagttcagaa cttcctgcct tttactctat 5520 gtcccaaaac ttgttttcca cacttcatga gtttctttta tctttttttt tttttgaaag 5580 aattaagcaa caaaagcaca gatttattaa aaaagaaagt acactccaca gggtgggagc 5640 aggcctgcca cttcatgggt ttctaataac agacttcact ctcctccctg agccaggggc 5700 cttgagtctt tgcagagcca accctccacc ccatcccatc cctcacacat gcacatgagc 5760 acactctgca ttctgacctc aacaacttca cttccacaga gcctgagatt ccagcaccta 5820 tgtcagagct cacagagact gtggtctgtg ccctggggtt gtctgtgggc ctcgtgggca 5880 ttgtggtggg gaccgtcttg atcatccgag gcctgcgttc agttggtgct tccagacacc 5940 aagggccctt gtgaatccca tcctgaaaaa gaaggtaagt ttgagatttg ttagagctga 6000 agctgcagga aggaaagtgg gaggaggctg tggacatgaa tgtggttgaa agttgtaggg 6060 gaattgggaa gtggcatgat gatgacacag gagccccctt ggacccatcg atctcatgtc 6120 tgtcctgttg caggtgcatc accatctaca gcagcggaag agtggacttg ctacatgacc 6180 tagcactatt ctctggcccg atttatcata ccctttttct cctgcaaatg tttctcctct 6240 taccttttct ctgctttttt ttccttaagc ttctgtatcc cctcagagct cacaaatgcc 6300 tttgaattct ttccctgacc tcctgatttt tttttctttt ctcaggtgtt acctactaag 6360 agatgcctgg ggtaagccgc ccagctacct aattcctcag taacatcgat ctaaaatctc 6420 catggaagca ataaattccc tttaagagat ctatgtcaaa tttttccatc tttcatccgg 6480 ggctgactga acctatggct aagaattggg acactctcat gtttcaagcc aatttcatct 6540 catttcccag atcatatttc atatccagta acacagaagc aaccaagtac aatatagcct 6600 gataatatgt tgatttctta gctgacatta atatttcttt cttctttgtg ttctcaccct 6660 tggcactgcc gcccatccct caattcaggc aacaatgaag ttaatggata ctctctgccc 6720 tttgctcaga attgttatag caaaaatttt aaaaccaaaa aataagtttg tactaatttc 6780 aatatggctt ttaaaagtat gatggagaaa taaattagga taaaggaact ttgaatcaca 6840 aaaatatcaa aagtaaaaat ttattctcaa aactttgaat ttgtaaagaa tgatgacagt 6900 agaagccttc ctctcccctc ctcgccttta gggaataaaa attctttagg taggaaaaga 6960 aatggaagtc agaaaaacat tagaaaaaga cagtaatgtg ggtatctgaa aaggaacaaa 7020 tacttattcc tcacataggg ttagtgacaa tgggaaaagg gataggagta gaagccacag 7080 acatatctag gagccctgaa tagaggcgca gtctgcctca cctcctgaat gaagctttgc 7140 tagataacca cgtagctttc cctgtgccac ccttgcatga agcagacagt atagtggata 7200 tggcaggatg tttctaggaa acatgccgat acaaaacaat gccagtatct tcagaaatcc 7260 ccagcccttt cccctcaccc ctcctggcta aggaaagcac tagcttatga gagaaaccct 7320 aggaggaaca acacagttga ga 7342 //