Dbfetch
ID OY496972; SV 1; linear; genomic DNA; STD; HUM; 7376 BP. XX AC OY496972; XX PR Project:PRJEB64519; XX DT 26-JUL-2023 (Rel. 144, Created) DT 27-JUL-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens HLA-DQA1 gene for MHC class II antigen, allele DE HLA-DQA1*03:01:01:NEW XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Lucas J., Lucas AM J.; RT ; RL Submitted (25-JUL-2023) to the INSDC. RL ANTHONY NOLAN RESEARCH INSTITUTE, 77C Fleet Road, London, NW3 2QU, United RL Kingdom XX DR MD5; 66bfc5a71a89c38cdc5864e4a583d283. XX FH Key Location/Qualifiers FH FT source 1..7376 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="AN302721" FT /db_xref="taxon:9606" FT CDS join(732..813,4511..4759,5205..5486,5834..5988) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAJ0990318.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCA FT LGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" FT exon 732..813 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /number=1 FT intron 814..4510 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /number=1 FT exon 4511..4759 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /number=2 FT intron 4760..5204 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /number=2 FT exon 5205..5486 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /number=3 FT intron 5487..5833 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /number=3 FT exon 5834..5988 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:01:01:NEW" FT /number=4 XX SQ Sequence 7376 BP; 2162 A; 1581 C; 1578 G; 2055 T; 0 other; ttgtaaccca gaaaatcctg aaggatgcca tataactgat gacctcatct atccatgagg 60 ctgctcagaa atgccctccc ctggccaggc acggtggctc atgcctgtaa tccaagcact 120 ttgggaggct gaggcaggca gatcatgagg tcaggagttc aagaccagcg tggccaacat 180 agtgaaactc tgtctctact aaaaatacag aaattagccg ggcatggtgg cagccgcctg 240 cagtcccagc tactcgggag ggtgaggcag gagaatcgct tgaacctggg aggcaaaggt 300 tgcagtgagc cgagaccatg ccattgtacc tcagcctggg tgacagagtg agactacgtc 360 tcgaaaagaa aagaaaaaga aaagaaaaag aaaaaaaaag aaaaatgccc atccctcttg 420 cgaatggcag acatgcacac accagagaag attccaattt agtgtcctcc ctctgttcat 480 agaacaattc ctcaagtcca ctctgagtag aggctgcatc acaacaaggg gattgccctg 540 tctccttcca gggctcttaa tacaaactct tcagctagta actgagatgt caccatgggg 600 gatttttcta attggccaaa acctgacctg gcagggtttg gtttgggtgt cttcagattt 660 ccttgtcttg aggccctcac aattgctcta cagctcagaa cagcaactgc tgaggctgcc 720 ttgggaagag gatgatccta aacaaagctc tgatgctggg ggccctcgcc ctgaccaccg 780 tgatgagccc ttgtggaggt gaagacattg tgggtgagtg catgagtgag gaatgttctc 840 tggagctgaa aaacagtaaa ttgaaggaaa agagagaaag cgatttgcag agaaattgta 900 gagatttcct aagacccctt tcagtattaa gagaattaaa aattatagct gttcctcctt 960 caggaaacca gagccccaac ctactctttt tgttatgtat gcttttgtgt tcactaagga 1020 tgctattctg tttatattat attcagtgac aacagcctgg aggtctctat gtcgttccgt 1080 catgattgcc tcaaaaatta gtgaagtttc catcagtgga taatttttta ttattaaaaa 1140 tgtatgaagt gtcattctca aatttccctg aacaactttt gaagcttttc gtatgtctcc 1200 tgtagtagat cttggggtcg ttccatcaat tatatactct atagatatta aaaaagttgc 1260 ccgtttcttt ctctcagact tactcacatt tccacatggg aactggcaca ggtggggagt 1320 gggtaaagga gtccagcagg ctgaatgcct tcaacaatca ttttaccaca tggtcctcac 1380 ttactctcag ctgcctcata tgtgtcacct cacaaataat caaataaaat gggcatgtag 1440 ctaagctttg taaatagtga aaacatggat gtcaattgtt tttacatatt tctattacag 1500 gtatagcttc acatttttat ttagcaaaat aagggatcct tttagtttaa aattgagaag 1560 tagaaaaaat tggtaaatta aatcatttta ttctcaaatt atcaacccaa attacctgtt 1620 cttcacctca tctaataaag tcctataaaa agaaaagtgg gccagacatg gtggctcatg 1680 cctgtaatcc cagcactttg ggaggccgaa gcaggaggat catttgagcc tgggagtttg 1740 agaccagcct gggcaacata gcaagacctc atctctacca aaaaataaaa taaaaattag 1800 ccaggtgtgg tggtgcatgc ctgtggtgcc agctactcag aaggctgcag tgggaggagc 1860 acttgagtcc aggaggtgga agctgcagtg agccatgatg gcaccactac actccagcca 1920 gggcaacaga gagagactct gtctcaaaaa gaaagaggaa agaaagagag aaaggaagga 1980 aagaaggaaa gaaggaagga aggaaggaga aagggaaggg aggaaggaaa aaagaaagaa 2040 agaaagaaaa cggaaggaag gaagcacaga ttaattattt ggtctctttg tctcctctgc 2100 ctttgtcgtc catctcttcc cacctctctt catgcattcc tttctccctc ttccctttca 2160 ggatccatct ctgactccct gctcctttat agagatggac agtgagtttg taaaacaaaa 2220 gttgaaaagt cagatagtta aaaggggaag tgaactggaa ggtactctaa actttcacaa 2280 ccttattaac catggctgct cccattctga ttttgttcag cagtggaagt ttcacccgct 2340 cctccagagc gcttggcttc tttgttccaa atttcctttc ttcaacctca caccagagtg 2400 ccctggtcag gctcagctca tccattaggc acaatgtggg cagtgcaggg gaccctccag 2460 actgtaaagc cacatgagaa tgttttaact ccttttaaaa ttataaaaaa atgaaattgt 2520 agagcctaag aaaatgtttt aacttttaat tcagcctaga ttatattgtc tttataccaa 2580 ttcagtcata aaatatagtt ttccatattt ttatggagga aggcgtccac acaagcaaga 2640 gtgcttgggg ctcacatgtc agaacgcaac cctgatcatg gctgatcctg gccttcgtgt 2700 ggttctgcta actatgtgcc tgtcagtctt ccccaaaatc tatgtggtcc tcaaatataa 2760 caactgtcat tcaatacaca tgtttgagca cccagtgagc taagttttaa ggattcaaag 2820 atgaaaagtc atgctgtctc ctctgcaaag ggtgctcaga ctagtgatgg aaacagtatg 2880 ggatgaaaga aagcagaagg ccattgctga gcaggcagtg gactcagcag aggctgaaac 2940 tatacaagtg acttggttcc agctgggcca gcaggataac cagatgaaaa gaaggattgc 3000 atatattcca tatatattta tgtttgaaca aagagtcaag gtttattgca aggataagga 3060 ggttttgttg gtggcctgtt aagaccatcc agggtggtca tactggatag ggaagaaggt 3120 gagctggaag aggaacagac aaacttggat ggccagatgt tgagatggag gagatggagg 3180 tcataacgtg gtcaaaaaca tgttgatgag aggacttagc tacaaagttg ttaacttaag 3240 cagaaacctc aaggattgat tttatgattt ctccaggaag tcctaaaagt taatttcatt 3300 tcagggagaa aaacaacaga ccactgcaaa gaccaggaac atgaaaggat aatgtagttt 3360 ggtttgcttg gcagatactt gtgaaagatg ttggactgta aggctgtcaa tatcctcctc 3420 gcagaactta ctacagtaca ttgtatctgc tcccttacct acctgactct cccactattc 3480 agtttgttcc ttaatggtag accatgcctg atcggtgttt tacacatccc ctgctatgtc 3540 tgatacttgt ggatgctcag aaagtgggga aggaaggaaa gatacgatgg taaaaggctt 3600 acacatgtct tgagcagaat gttcagtttg gctcatttgg ctggagtcat actgcatggc 3660 tgccattctg ctctggcatc ctcagagaag cacactgccc attaaaggaa aaagggtgaa 3720 tacaaatgtt gagtcagaac actgcagaca tttagtaacc tccttcagag gaaaaaaaaa 3780 ggtgggggga atgacagaaa tccaaaaact agtagagctt ccactttttc atttcagaag 3840 aaatcagtta ctctcctcta aggaccatta ctattaacaa aacagagacc ttagaaggaa 3900 gcattattta cttatcatat attttgtaat gttattaccc ttcttgttat actctttctt 3960 ataccctacc attgttagca gaaattattt taaattaata agatcctgca tgcttttcct 4020 ttttctaaaa aaagaaagat ctctgtgtag aatgtcctgt tctgagccag tcctgagagg 4080 aaaggaagta taatcaattt gttattaact gatgaaagaa ttaagtgaaa gataaacctt 4140 aggaagcaga gggaagttaa tctatgacta agaaagttaa gtactctgat aactcattca 4200 ttccttcttt tgttcattta cattatttaa tcacaagtct atgatgtgcc aggcactcag 4260 gaaatagtga aaattggaca cgcgatattc tgcccttgtg tagcacacac cgtagtggga 4320 aagaaagtgc acttttaacc ggacaactat caacacgaag aggggaggaa gcaggggctg 4380 gaaatgtcca cagactttgc caaagacaaa gcccataata tctgaaagtc agtttcttcc 4440 atcattttgt gtattaaggt tctttattcc cctgttctct gccttcctgc ttgtcatctt 4500 cactcatcag ctgaccatgt tgcctcttac ggtgtaaact tgtaccagtc ttatggtccc 4560 tctgggcagt acagccatga atttgatgga gacgaggagt tctatgtgga cctggagagg 4620 aaggagactg tctggcagtt gcctctgttc cgcagattta gaagatttga cccgcaattt 4680 gcactgacaa acatcgctgt gctaaaacat aacttgaaca tcgtgattaa acgctccaac 4740 tctaccgctg ctaccaatgg tatgtgtcca ccattctgcc tttctttact gatttatccc 4800 tttataccaa gtttcattat tttctttcca agaggtcccc agatcttctc atggcaattg 4860 ctgaaatttt atcatttctc atctctaaaa tcacatattc caatgtaata caagggtctt 4920 tccattatgc attcattaaa tccttctagg agaggtctca tcaaccttct actttattaa 4980 acatgcccac agagagaagg gcacaggagt aaagcagagg caatgtgtcg ttgctcccaa 5040 atgtgtcgtt acaatgtgtc gttgcttacc caaagaggta aataaggcct ctttgaccag 5100 caggagagga aatgctggta ggaagactct tccaggatgt aatgcagaag aagctcaggg 5160 cagagctatt cacactttac accagtgctg tttcctcacc atagaggttc ctgaggtcac 5220 agtgttttcc aagtctcccg tgacactggg tcagcccaac accctcatct gtcttgtgga 5280 caacatcttt cctcctgtgg tcaacatcac ctggctgagc aatgggcact cagtcacaga 5340 aggtgtttct gagaccagct tcctctccaa gagtgatcat tccttcttca agatcagtta 5400 cctcaccttc ctcccttctg ctgatgagat ttatgactgc aaggtggagc actggggcct 5460 ggatgagcct cttctgaaac actggggtaa ggatgagttt caccattttt tgatgctttc 5520 ttgtctgtca agttcagaac ttcctgcctt ttactctata tcccaaaact tgttttccac 5580 acttcatgag tttcttttgt cttttttttg aaagaattaa gcaacaaaag cacagattta 5640 ttaaaaaaga aagtacactc cacagggtgg gagcaggcct gccacttcat gggtttctaa 5700 taacagactt cactctcctc cctaagctgg gggccttgag tctttgcaga gccaaccctc 5760 taccccatcc catcccacac acatgcacat gagcaaactc tgcattctga cctcaacaac 5820 ttcacttcca cagagcctga gattccaaca cctatgtcag agctcacaga gactgtggtc 5880 tgcgccctgg ggttgtctgt gggcctcgtg ggcattgtgg tggggaccgt cttgatcatc 5940 cgaggcctgc gttcagttgg tgcttccaga caccaagggc ccttgtgaat cccatcctga 6000 aaaggaaggt aagattgaga tttgttagag ctgaagctgc aggaaggaaa gtgggaggag 6060 gctgtggaca tgaatgtggt tgaaagttgt aggggaattg ggaagtggca tgatgatgac 6120 acaggagccc ccttggaccc atcgatctca tgtctgtcct gttgcaggtg catcaccatc 6180 tacagcagcg gaagagtgga cttgctacat gacctagcac tattctctgg cccgatttat 6240 catacccttt ttctcctgca aatgtttctc ctcttacctt ttctctgctt tttttttctt 6300 aagcttctgt atcccctcag agctcacaaa tgcctttgaa ttctttccct gacctcctga 6360 tttttttttc ttttctcagg tgttacctac taagagatgc ctggggtaag ccgcccagct 6420 acctaattcc tcagtaacat cgatctaaaa tctccatgga agcaataaat tccctttaag 6480 agatctatgt caaatttttc tatctttcat ccggggctga ctgaacctat ggctaagaat 6540 tgtgacactc tcatgtttca agccaatttc atctcatttc ccagatcata tttcatatcc 6600 agtaacacag aagcaaccaa gtacaatata gcctgataat atgttgattt cttagctgac 6660 attaatattt ctttcttctt tgtgttctca cccttggcac tgccgcccat ccctcaattc 6720 aggcaacaat gaagttaatg gatactctct gccctttgct cagaattgtt atagcaaaaa 6780 ttttaaaacc aaaaaataag tttgtactaa tttcaatatg gcttttaaaa gtatgatgga 6840 gaaataaatt aggataaagg aactttgaat cacaaaaata tcaaaagtaa aaatttattc 6900 tcaaaacttt gcatttgtaa agaatgatga cagtagaagc cttcctctcc cctcctcgcc 6960 tttagggaat aaaaattctt taggtaggaa aagaaatgga agtcagaaaa acattagaaa 7020 aagacagtaa tgtgggtatc tgaaaaggaa caaatactta ttcctcacat agggttagtg 7080 acaatgggaa aagggatagg agtagaagcc acagacatat ctaggagccc tgaatagagg 7140 cgcagtctgc ctcacctcct gaatgaagct ttgctagata accacgtagc tttccctgtg 7200 ccacccttgc atgaagcaga cagtatagtg gatatggcag gatgtttcta ggaaacatgc 7260 cgatacaaaa caatgccagt atcttcagaa atccccagcc ctttcccctc acccctcctg 7320 gctaaggaaa gcactagctt atgagagaaa ccctaggagg aacaacacag ttgaga 7376 //