Dbfetch
ID OX333453; SV 1; linear; genomic DNA; STD; HUM; 6666 BP.
XX
AC OX333453;
XX
PR Project:PRJEB55785;
XX
DT 10-SEP-2022 (Rel. 144, Created)
DT 14-APR-2023 (Rel. 144, Last updated, Version 2)
XX
DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line
DE DKMS-LSL_ID20738363_DQB1_1, allele HLA-DQB1*05:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.;
RT ;
RL Submitted (06-SEP-2022) to the INSDC.
RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2,
RL Saxony, 01069 Dresden, Germany
XX
DR MD5; d3a0f00e36fc09132c015666af3bf17a.
XX
FH Key Location/Qualifiers
FH
FT source 1..6666
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL_ID20738363_DQB1_1"
FT /db_xref="taxon:9606"
FT exon 1..261
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=1
FT CDS join(153..261,1720..1989,4499..4780,5292..5402,6497..6510)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /product="MHC class II antigen"
FT /function="antigen presenting molecule"
FT /protein_id="CAI2365890.1"
FT /translation="MSWKKSLRIPGDLRVATVTLMLAILSSSLAEGRDSPEDFVYQFKG
FT LCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYRAVTPQGRPSAEYWNSQKEVLEGAR
FT ASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEALNHHNLLICSVTDFYPSHIKVRW
FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYSCHVEHPSLQSPITVEWRA
FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRKGLLH"
FT intron 262..1719
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=1
FT exon 1720..1989
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=2
FT intron 1990..4498
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=2
FT exon 4499..4780
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=3
FT intron 4781..5291
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=3
FT exon 5292..5402
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=4
FT intron 5403..5866
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=4
FT exon 5867..5890
FT /pseudo
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=5
FT intron 5891..6496
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=5
FT exon 6497..6666
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=6
XX
SQ Sequence 6666 BP; 1680 A; 1540 C; 1630 G; 1816 T; 0 other;
cagctccagt gctgattggt tcttttccaa gcgaccatcc aatcctgcca cgcacggaaa 60
catccacagg tttttattct ttctgccagg tacatcagat ccatcaggtc tgagctgtgt 120
tgactaccac tacttttccc ttcgtctcaa ttatgtcttg gaagaagtct ttgcggatcc 180
ccggagacct tcgggtagca actgtcacct tgatgctggc gatcctgagc tcctcactgg 240
ctgagggcag agactctccc ggtaagtgca ggaaagctgc tctccagagc cgccactctg 300
ggaacaggct ttccttgggc tggggtatgg gggatggtga tctccatggt cttggacaca 360
atctttcatc aacatttcct cttttttggg aaagaaagct atgttgcatt cccatttacc 420
ttttagtgat gaaatgagga caatccaatc cccatcctac aggtttaagc ctggaagagg 480
aggagagagg agaggaaaga ggagataaag tgtacattta ctaccagtga taggacaaag 540
tgagcatggg gttatttttg aagatattaa tttctccaaa gacacagcag gatttgtcat 600
ttcagcgtgc cccaagactt tgcctggact aaatattatg agattctgca gtgggaaatg 660
taaggcagcg atggtgtctg tagtctccgt atttgaggaa aagtagtctg tattcctgac 720
tgactggagc gtttgtggag gcaaaatctt ggtactgagg gaagctgact ggctgaccac 780
agacagggag tcttcaggtt tcactgattt atgggcaaat ggtgacttga gtgggattca 840
gagacccgag ttgttggtgg actaaattta gtagaaagga ggatgtaaag aagggaaata 900
acacatatta tgaaaccact cactcagaca cagaacaata ctttacataa attctctctc 960
actccttcta acatcctgtg tgcagatatc atgattttct tttacacaat tatacttgtg 1020
atacggatat tctgcccaat atggatatac acaacctggc caagctggta actgccacag 1080
tttaattgga atctagttta tcaaattcaa aagcttatgc tctttccatg aataaatatt 1140
tctatctagg actcagagtt gtaggtcctt tccaacatag aagggagtga acctcaacgg 1200
gtcttgggag ggtaaatcca ggcatgggaa ggaaggtatt ttacccaggg accaagagaa 1260
tacgcgtatc agaacgagga caagattaat tcctggacct gtcgcatcat tcccttgaac 1320
tcacaggttt atgtggataa gtttatctct gaggtttcca ggagctgcat gaaaaatggg 1380
atttcatgcg agaacgcccc gatccctcta agtgcagagg tccatgtaaa atcagcccga 1440
ctgcctcttc gctgggttca ctggctcagg cagggacagg gctttccgcc ctttcctgcc 1500
tgtaggaagg cggattcccg aagcccccag agagggcggg cagggctggg cagagccgcc 1560
gggaggatcc caggtctggg gcgccaggca cgggctggcg ggaactggag gtcgcgcggg 1620
cggttccaca gctccggtcc gggtcagggc ggcggctggg ggcgcagccg ggctagggcc 1680
aggctggggc ctgactgact ggcccgtgat tccccgcaga ggatttcgtg taccagttta 1740
agggcctgtg ctacttcacc aacgggacgg agcgcgtgcg gggtgtgacc agacacatct 1800
ataaccgaga ggagtacgtg cgcttcgaca gcgacgtggg ggtgtaccgg gcggtgacgc 1860
cgcaggggcg gcctagcgcc gagtactgga acagccagaa ggaagtcctg gagggggccc 1920
gggcgtcggt ggacagagtg tgcagacaca actacgaggt ggcgtaccgc gggatcctgc 1980
agaggagagg tgagcgtcgt cgcccctccg tgaggcccac cgttggccgg gacctctagt 2040
ctccgtgctg ggaggggcga tggggttgcg gcctctgaaa cctgagcccc gtttattcca 2100
ccccagggga caggagttgg cggcgtgagt ggtggggcag gtgcatcaga tgggcgggga 2160
cctagggcag agcagggaga caagcagagt tggccaggct gcctagtgtc cccccagggt 2220
cctcgtctgt tggcctcgtc ctccgctctg cacgtttctc gcctcgtgcc ttatgtgttt 2280
gcctcctcgt gccttacctt tgctaagcag ttctctctgc ccccaatgcc caccctcttc 2340
ccctgcccgt ccgccccact agcactgccc cattcagcaa ggcccacgtg cgcagctcgc 2400
gccgcaggaa gcttcaggct tggcctggtg gagttagggc tgccccacaa ctgcgcccag 2460
ggcatccagc aattacagtt gcaaaataag atattttgac tttttggctt caaatcatta 2520
ttcatcgtaa ttctgttttc ctaaatggct atcactaatg gcggagattt ttgaggtggg 2580
agactgttta aattattgca tgcttggtac ctgacacttt gactggtatg tggtatgagc 2640
tcaatgatct tctgttaaat tcatgaataa atgtactcag ctgcccatcc acttaggctc 2700
aagaaaaaaa cagaggctta caaatggact ttgttaatta ttttctatca ttttgcttaa 2760
tgctttaaag taaactctta ttgactagga tcttaataga atttgtgaat acaaagtctg 2820
agaaaaaaag tgtttgctaa aaataaaaac aatgcttgaa tgatgttgta aggcagagtt 2880
ttaatttctt agacaagctg aacaaatggc acaatgcaaa gggcagaagt ttgggaataa 2940
ataggttgaa gccattaaat tattagataa aaatagtttc aggttgcttt tggcctgggt 3000
tctcccctcc ctccatcact atccacttca ggaataaaca ttctgaaagt caattttacc 3060
cattcaggta gcacttattt ctagacagtt gccttatcaa ataccatata tgttgtgcca 3120
tttaatctca cagttacctg tgcattagag attagcatca ccacttgata tatcctaata 3180
ttggtacagg ataaacactt taagtaatca gcccacaatt actcaccaag actttaagcc 3240
tcccaaagta taaaccattc ttatgttcct cagtgtacat ccatagagtc taagggatgt 3300
aaggccttgt taaagccagt tttgaccaga agcagcaatg agcctattcc tgtttgttct 3360
ccatgttaat ggggcattga aaattcactg attaatcaat ccctagtctg accccagtgt 3420
tatctatgca ggttcacaaa acttttagat tactttacac ccccttgcct tcttttgact 3480
cacattctaa tgccagcaag tacttatatt tttgctattt cagttctatt tccataaaat 3540
ttattttatc atcttttctc ataaaattgt gccttctatt ttactcccag tctgtttaag 3600
atgaacaaat cttacaaggt cacatagctg actgtgatat cagttggact ccaggaagga 3660
gaacctaaag aaaagttcaa gtccaagcag aaaccgtgat tccttccgga tgatggctca 3720
agagtgctgt ttaactggga tgcaacctgc tgacctcagc aaatcctagt tatatgtatg 3780
tgttcacatt acaggctcat tagcccaggc cgacctctgc atggatctca gaatattttc 3840
tatggagaac gtacatgata atgtctgatt tcagaacaag aaagtaattc tcaatagcaa 3900
ggaaatggag tagggtagac agctagtaac taaactcact tgtgcgttaa gaagaaatta 3960
aggaaaaaag aaaataagag aacatattac taaataaaga aacacacatt aaatatttgc 4020
tatagtttca cactaagaga ataaaggaaa tgcaataaag tggcctgaaa ggtaaaggat 4080
gagatgtgta aaagaggcag ggaaagatgt ataataattt tttactatga gcagcaatct 4140
gagaagataa aggaattgag ctgtgggcaa acatgatgtt tgatcagtgt tatttgtttt 4200
caaggcctgc ctactttttt tttcaaatat tacaaacttt tgaaataaca ttctttttgt 4260
tttttactgt ctgttactag attgcatatt ctataaacga agggaccatg gtatgttgtt 4320
tatctttgga ttctcagtga ttgtcaaatt tatatttgtt gaaggaacct taatccaaga 4380
cttggactcc aggtatcttt ccactctggt tccaaggagg gacccttcct catggtggac 4440
gtgctgtgtg gtctcacgtc tcactcctgt gtcttttcct gtctgttact gcccttagtg 4500
gagcccacag tgaccatctc cccatccagg acagaggccc tcaaccacca caacctgctg 4560
atctgctcgg tgacagattt ctatccaagc cacatcaaag tccggtggtt tcggaatgat 4620
caggaggaga cagccggcgt tgtgtccacc cccctcatta ggaacggtga ctggaccttc 4680
cagatcctgg tgatgctgga aatgactccc cagcgtggag atgtctacag ctgccacgtg 4740
gagcacccca gcctccagag ccccatcacc gtggagtggc gtaaggagat attgagtttc 4800
tgttattatg ggccccacaa gacaaagagc tccttctgac ccattccttc ccatctctta 4860
tccctgatgt cactactgag ctgggaatca caggagacta gagcacctct agttccatgg 4920
cgagtgcatc agaagaatcc tgatctcatc acctttccag atgctaggga aattactcta 4980
catactgttg ctctggatcc cagtcctgat agctctgacg gactgattct tagggctggt 5040
gattgggatc ttagggtcta aggttatgga tgagttcctg aggagcagag atttgcttcc 5100
ccactctctc acctacccac tgtatccaag gacctattgt ctggcctttc ccctccttag 5160
gggtggtctg aatggagagc taggttcctt tgatgccttc acctcctgca cctcagactg 5220
gacttcaact cctcagcagg tatgctatgg ggtgtgggga caaacaccga cactcaggtt 5280
ctgcttttta ggggctcagt ctgaatctgc ccagagcaag atgctgagtg gcgttggagg 5340
cttcgtgctg gggctgatct tccttgggct tggccttatc atccgtcaaa ggagtcggaa 5400
aggtgaggaa ccccagggga aaaggggaag atgggctgtg acccagaccc tctgttcaga 5460
gtggtcctgt ctgtagatta gctctttcct cctgaccctg agaggaagtg cgaggagaca 5520
ggacaagatg ggaggaggca ttggaatctg attttactgg ttgaaaggta gcgctgtcac 5580
agagctgact gatagagctt attccagggc atccttacca ttcatcattg tctcactggc 5640
tcctttccaa aagcttcctc cattaagagg gtcagagcct cagcctcctt tctttctggt 5700
gacaatttcc tttgttttag gggattttaa attagggtgc tgaaggcctg gaagaacatg 5760
ggtgggaaga gaatgtaact ctaagtcatg tgtgtcattt tcctttgggg tgagagagtg 5820
gctgtttgtg taatgagacc tttctctgca taacttcctt ttgtaagacc tcaagggcct 5880
ccaccagcag gtaatatttc agccatgatc cagtgtgggg aggcacaggt ataagaggga 5940
agagcatgag ctgagtgtac ctgaccacag tggtccatgt tcatggccta tttgctgcta 6000
tgaggatcaa gacttagggg agaagtttgc cagtttctag gaatctccag acattgttcc 6060
ccagaaccaa gccttaactt tggtggcatc ttcttgtgaa atgtggagcc agaaccacag 6120
cttaaatgtt agacactagg atgatgccca ctttgtgcca catgatggtg gctactgcct 6180
gtaggcattt tccagtgact gaaagaggct gctagtggtc gggatgagat atcatccaat 6240
ttcctaaaaa gactgaaccc ttcatattcc ccagaagaat aacagctgtt ccccacctcc 6300
cacacatctg catcaagctg aagttctgtg tcctcgtgag ctgatttcac ctttgcacag 6360
atcttggggg aggtgatgac aatacaccct ggacctcaac tttctctgtc tgaagctgca 6420
gggggcccct gaagggtcgg ggagatggca ggcccaccag gatcaatgct gatcaatgct 6480
cttctctctt ctccagggct tctgcactga ctcctgagac tgttttaact aagactggtt 6540
atcactcttc tgtgatgcct gcttgtccct gcccagaatt cccagctgcc tgtgtcagct 6600
tgtccccctg agatcaaagt cctacagtgg ctgtcacaca accaccaggt catctccttt 6660
catccc 6666
//