Dbfetch
ID OX333447; SV 1; linear; genomic DNA; STD; HUM; 6669 BP. XX AC OX333447; XX PR Project:PRJEB55785; XX DT 10-SEP-2022 (Rel. 144, Created) DT 14-APR-2023 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL_ID20645345_DQB1_1, allele HLA-DQB1*05:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.; RT ; RL Submitted (06-SEP-2022) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2, RL Saxony, 01069 Dresden, Germany XX DR MD5; e82ae188914712bef1938210e7d1d3dd. XX FH Key Location/Qualifiers FH FT source 1..6669 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID20645345_DQB1_1" FT /db_xref="taxon:9606" FT exon 1..261 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=1 FT CDS join(153..261,1720..1989,4499..4780,5292..5402,6500..6513) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAI2365847.1" FT /translation="MSWKKSLRIPGDLRVATVTLMLAILSSSLAEGRDSPEDFVYQFKG FT LCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYRAVTPQGRPVAEYWNSQKEVLEGAR FT ASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEALNHHNLLICSVTDFYPSPIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRKGLLH" FT intron 262..1719 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=1 FT exon 1720..1989 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=2 FT intron 1990..4498 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=2 FT exon 4499..4780 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=3 FT intron 4781..5291 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=3 FT exon 5292..5402 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=4 FT intron 5403..5866 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=4 FT exon 5867..5890 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=5 FT intron 5891..6499 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=5 FT exon 6500..6669 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=6 XX SQ Sequence 6669 BP; 1676 A; 1542 C; 1634 G; 1817 T; 0 other; cagctccagt gctgattggt tcttttccaa gcgaccatcc aatcctgcca cgcacggaaa 60 catccacagg tttttattct ttctgccagg tacatcagat ccatcaggtc tgagctgtgt 120 tgactaccac tacttttccc ttcgtctcaa ttatgtcttg gaagaagtct ttgcggatcc 180 ccggagacct tcgggtagca actgtcacct tgatgctggc gatcctgagc tcctcactgg 240 ctgagggcag agactctccc ggtaagtgca ggaaagctgc tctccagagc cgccactctg 300 ggaacaggct ttccttgggc tggggtatgg gggatggtga tctccatggt cttggacaca 360 atctttcatc aacatttcct cttttttggg aaagaaagct atgttgcatt cccatttacc 420 ttttagtgat gaaatgagga caatccaatc cccatcctac aggtttaagc ctggaagagg 480 aggagagagg agaggaaaga ggagataaag tgtacattta ctaccagtga taggacaaag 540 tgagcatggg gttatttttg aagatattaa tttctccaaa gacacagcag gatttgtcat 600 ttcagcgtgc cccaagactt tgcctggact aaatattatg agattctgca gtgggaaatg 660 taaggcagcg atggtgtctg tagtctccgt atttgaggaa aagtagtctg tattcctgac 720 tgactggagc gtttgtggag gcaaaatctt ggtactgagg gaagctgact ggctgaccac 780 agacagggag tcttcaggtt tcactgattt atgggcaaat ggtgacttga gtgggattca 840 gagacccgag ttgttggtgg actaaattta gtagaaagga ggatgtaaag aagggaaata 900 acacatatta tgaaaccact cactcagaca cagaacaata ctttacataa attctctctc 960 actccttcta acatcctgtg tgcagatatc atgattttct tttacacaat tatacttgtg 1020 atacggatat tctgcccaat atggatatac acaacctggc caagctggta actgccacag 1080 tttaattgga atctagttta tcaaattcaa aagcttatgc tctttccatg aataaatatt 1140 tctatctagg actcagagtt gtaggtcctt tccaacatag aagggagtga acctcaacgg 1200 gtcttgggag ggtaaatcca ggcatgggaa ggaaggtatt ttacccaggg accaagagaa 1260 tacgcgtatc agaacgagga caagattaat tcctggacct gtcgcatcat tcccttgaac 1320 tcacaggttt atgtggataa gtttatctct gaggtttcca ggagctgcat gaaaaatggg 1380 atttcatgcg agaacgcccc gatccctcta agtgcagagg tccatgtaaa atcagcccga 1440 ctgcctcttc gctgggttca ctggctcagg cagggacagg gctttccgcc ctttcctgcc 1500 tgtaggaagg cggattcccg aagcccccag agagggcggg cagggctggg cagagccgcc 1560 gggaggatcc caggtctggg gcgccaggca cgggctggcg ggaactggag gtcgcgcggg 1620 cggttccaca gctccggtcc gggtcagggc ggcggctggg ggcgcagccg ggctagggcc 1680 aggctggggc ctgactgact ggcccgtgat tccccgcaga ggatttcgtg taccagttta 1740 agggcctgtg ctacttcacc aacgggacgg agcgcgtgcg gggtgtgacc agacacatct 1800 ataaccgaga ggagtacgtg cgcttcgaca gcgacgtggg ggtgtaccgg gcagtgacgc 1860 cgcaggggcg gcctgttgcc gagtactgga acagccagaa ggaagtcctg gagggggccc 1920 gggcgtcggt ggacagggtg tgcagacaca actacgaggt ggcgtaccgc gggatcctgc 1980 agaggagagg tgagcgtcgt cgcccctccg tgaggcccac cgttggccgg gacctctagt 2040 ctctgtgctg ggaggggcga tggggttgcg gcctctgaaa cctgagcccc gtttattcca 2100 ccccagggga caggagttgg cggcgtgagt ggtggggcag gtgcatcaga tgggcgggga 2160 cctagggcag agcagggaga caagcagagt tggccaggct gcctagtgtc cccccagggt 2220 cctcgtctgt tggcctcgtc ctccgctctg cacgtttctc gcctcgtgcc ttatgtgttt 2280 gcctcctcgt gccttacctt tgctaagcag ttctctctgc ccccaatgcc caccctcttc 2340 ccctgcccgt ccgccccact agcactgccc cattcagcaa ggcccacgtg cgcagctcgc 2400 gccgcaggaa gcttcaggct tggcctggtg gagttagggc tgccccacaa ctgcgcccag 2460 ggcatccagc aattacagtt gcaaaataag atattttgac tttttggctt caaatcatta 2520 ttcatcgtaa ttctgttttc ctaaatggct atcactaatg gcggagattt ttgaggtggg 2580 agactgttta aattattgca tgcttggtac ctgacacttt gactggtatg tggtatgagc 2640 tcaatgatct tctgttaaat tcatgaataa atgtactcag ctgcccatcc acttaggctc 2700 aagaaaaaaa cagaggctta caaatggact ttgttaatta ttttctatca ttttgcctaa 2760 tgctttaaag taaactctta ttgactagga tcttaataga atttgtgaat acaaagtctg 2820 agaaaaaaag tgtttgctaa aaataaaaac aatgcttgaa tgacgttgta aggcagagtt 2880 ttaatttctt agacaagctg aacaaatggc acaatgcaaa gggcagaagt ttgggaataa 2940 ataggttgaa gccattaaat tattagataa aaatagtttc aggttgcttt tggcctgggt 3000 tctcccctcc ctccatcact atccacttca ggaataaaca ttctgaaagt caattttacc 3060 cattcaggta gcacttattt ctagacagtt gccttatcaa ataccatata tgttgtgcca 3120 tttaatctca cagttacctg tgcattagag attagcatca ccacttgata tatcctaata 3180 ttggtacagg ataaacactt taagtaatca gcccacaatt actcaccaag accttaagcc 3240 tcccaaagta taaaccattc ttatgttcct cagtgtacat ccatagagtc taagggatgt 3300 aaggccttgt tgaagccagt tttgaccaga agcagcaatg agcctattcc tgtttgttct 3360 ccatgttaat ggggcattga aaattcactg attaatcaat ccctagtctg accccagtgt 3420 tatctatgca ggttcacaaa acttttagat tactttacac ccccttgcct tcttttgact 3480 cacattctaa tgccagcaag tacttatatt tttgctattt cagttctatt tccataaaat 3540 ttattttatc atcttttctc ataaaattgt gccctctatt ttactcccag tctgtttaag 3600 atgaacaaat cttacaaggt cacatagctg actgtgatat cagttggact ccaggaagga 3660 gaacctaaag aaaagttcaa gtccaagcag aaaccgtgat tccttccgga tgatggctca 3720 agagtgatgt ttaactggga tgcaacctgc tgacctcagc aaatcctagt tatatgtatg 3780 tgttcacatt acaggctcat tagcccaggc cgacctctgc atggatctca gaatattttc 3840 tatggagaac atacatgata atgtctgatt tcagaacaag aaagtaattc tcaatagcaa 3900 ggaaatggag tagggtagac agctagtaac taaactcact tgtgcgttaa gaagaaatta 3960 aggaaaaaag aaaataagag aacatattac taaataaaga aacacacatt aaatatttgc 4020 tatagtttca cactaagaga ataaaggaaa tgcaataaag tggcctgaaa ggtaaaggat 4080 gagatgtgta aaagaggcag ggaaagatgt ataataattt tttactatga gcagcaatct 4140 gagaagataa aggaattgag ctgtgggcaa acatgatgtt tgatcagtgt tatttgtttt 4200 caaggcctgc ctactttttt tttcaaatat tacaaacttt tgaaataaca ttctttttgt 4260 tttttactgt ctgttactag attgcatatt ctataaatga agggaccatg gtatgttgtt 4320 tatctttgga ttctcagtga ttgtcaaatt tatatttgtt gaaggaacct taatccaaga 4380 cttggactcc aggtatcttt ccactctggt tccaaggagg gacccttcct catggtggac 4440 gtgctgtgtg gtctcacgtc tcactcctgt gtcttttcct gtctgttact gcccttagtg 4500 gagcccacag tgaccatctc cccatccagg acagaggccc tcaaccacca caacctgctg 4560 atctgctcgg tgacagattt ctatccaagc ccgatcaaag tccggtggtt tcggaatgat 4620 caggaggaga cagccggcgt tgtgtccacc cccctcatta ggaacggtga ctggaccttc 4680 cagatcctgg tgatgctgga aatgactccc cagcgtggag atgtctacac ctgccacgtg 4740 gagcacccca gcctccagag ccccatcacc gtggagtggc gtaaggagat attgagtttc 4800 tgttattatg ggccccacaa gacaaagagc tccttctgac ccattccttc ccatctctta 4860 tccctgatgt cactactgag ctgggaatca caggagacta gagcacctct agttccatgg 4920 cgagtgcatc agaagaatcc tgatctcatc acctttccag atgctaggga aattactcta 4980 catactgttg ctctggatcc cagtcctgat agctctgacg gactgattct tagggctggt 5040 gattgggatc ttagggtcta aggttatgga tgagttcctg aggagcagag atttgcttcc 5100 ccactctctc acctacccac tgtatccaag gacctattgt ctggcctttc ccctccttag 5160 gggtggtctg aatggagagc taggttcctt tgatgccttc acctcctgca cctcagactg 5220 gacttcaact cctcagcagg gatgctatgg ggtgtgggga caaacactga cactcaggtt 5280 ctgcttttta ggggctcagt ctgaatctgc ccagagcaag atgctgagtg gcgttggagg 5340 cttcgtgctg gggctgatct tccttgggct tggccttatc atccgtcaaa ggagtcggaa 5400 aggtgaggaa ccccagggga aaaggggaag atgggctgtg acccagaccc tctgttcaga 5460 gtggtcctgt ctgtagatta gctctttcct cctgaccctg agaggaagtg cgaggagaca 5520 ggacaagatg ggaggaggca ttggaatctg attttactgg ttgaaaggta gcgctgtcac 5580 agagctgact gatagagctt attccagggc atccttacca ttcatcattg tctcactggc 5640 tcctttccaa aagcttcctc cattaagagg gtcagagcct cagcctcctt tctttctggt 5700 gacaatttcc tttgttttag gggattttaa attagggtgc tgaaggcctg gaagaacatg 5760 ggtgggaaga gaatgtaact ctaagtcatg tgtgtcattt tcctttgggg tgagagagtg 5820 gctgtttgtg taatgagacc tttctctgca taacttcctt ttgtaagacc tcaagggcct 5880 ccaccagcag gtaatatttc agccatgatc cagtgtgggg aggcacaggt ataagaggga 5940 agagcatgag ctgagtgtac ctgaccacag tggtccatgt tcgtggccta tttgctgcta 6000 tgaggatcaa gacttagggg agaagtttgc cagtttctag gaatctccag acattgttcc 6060 ccagaaccaa gccttaactt tggtggcatc ttcttgtgaa atgtggagcc agaaccacag 6120 cttaaatgtt agacactagg atgatgccca ctttgtgcca catgatggtg gctactgcct 6180 gtaggcattt tccagtgact gaaagaggct gctagtggtc gggatgagat atcatccaat 6240 ttcctaaaaa gactgaaccc ttcatattcc ccagaagaat aacagctgtt ccccacctcc 6300 cacacatctg catcaagctg aagttctgtg tcctcgtgag ctgatttcac ctttgcacag 6360 atcttggggg aggtgatgac aatacaccct ggacctcaac tttctctgtc tgaagctgca 6420 gggggcccct gaagggtggg ggagatggca ggcccaccag gataccctgt gctgatcaat 6480 cctcttctct cttctccagg gcttctgcac tgactcctga gactgtttta actaagactg 6540 gttatcactc ttctgtgatg cctgcttgtc cctgcccaga attcccagct gcctgtgtca 6600 gcttgtcccc ctgagatcaa agtcctacag tggctgtcac gcaaccacca ggtcatctcc 6660 tttcatccc 6669 //