Dbfetch
ID OX333410; SV 1; linear; genomic DNA; STD; HUM; 6681 BP. XX AC OX333410; XX PR Project:PRJEB55785; XX DT 10-SEP-2022 (Rel. 144, Created) DT 14-APR-2023 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL_ID20306707_DQB1_1, allele HLA-DQB1*06:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.; RT ; RL Submitted (06-SEP-2022) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2, RL Saxony, 01069 Dresden, Germany XX DR MD5; a0ed352bca5c4e9493ac8ea3bad75f25. XX FH Key Location/Qualifiers FH FT source 1..6681 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID20306707_DQB1_1" FT /db_xref="taxon:9606" FT exon 1..261 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=1 FT CDS join(153..261,1693..1962,4513..4794,5304..5414,6512..6525) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAI2365603.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRHIYNREEYARFDSDVEVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" FT intron 262..1692 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=1 FT exon 1693..1962 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT intron 1963..4512 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT exon 4513..4794 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT intron 4795..5303 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT exon 5304..5414 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT intron 5415..5878 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT exon 5879..5902 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=5 FT intron 5903..6511 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=5 FT exon 6512..6681 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=6 XX SQ Sequence 6681 BP; 1686 A; 1536 C; 1630 G; 1829 T; 0 other; cagctccagt gctgattggt tcttttccga gggaccatcc aatcctgcca ctcacggaaa 60 catccacagg tttttattct ttctgccagg tacatcagat ccatcaggtc cgagctgtgt 120 tgactaccac tgcttttccc ttcgtctcag ttatgtcttg gaagaaggct ttgcggatcc 180 ccggagacct tcgggtagca actgtcacct tgatgctggc gatgctgagc tccctactgg 240 ctgagggcag agactctccc ggtaagtgca gggcagctgc tctccagagc cgccactctg 300 ggaacaggct ctccttgggc tggggtatgg gggatggtga tctctatgat cttggacaca 360 atctttcatc aacatttcct ctctcttggg aaagaaagct atgttgcatt cccatttatc 420 ttttagtgat gagatgagga caatccaatc cccatcctac aggcttaagc ctggaagagg 480 aggagagagg agagaaagag gagataaagt gtacatttac taccagcgat aggacaaagt 540 gagcatgggg ttatttttga agatatgaat ttctccaaag acacagcagg atttgtcatt 600 taggcgtgcc ccaagactgc ctggacttag gattatgaga tcctgcattg gaaaatgtga 660 ggcagcaatg gtgtctgtag tctctgtatt tgaggaaaat ttgtctctat tcctgaccga 720 gtggagcatt tgtggaggca aaatcttggt gctgagggaa gctgactggc tgaccacaga 780 gagggagtct tcgggtttca ctgatttatg ggcaaatggt gacttgagtg ggattcagag 840 acccgagtta atggtggact gaatttagta ggaaggagga tgtaaagaag ggaaataaca 900 catattgtga aaccactcac ttcagacaga acaatacttt atataacttc tctctcactc 960 cttctaacat cctgtgtgta gatatcatga ttttctttta cacaattata cttgtgatat 1020 ggatattctg ttacataacc tgcccaaact ggtgactgcc acagtttaac tggaatctag 1080 tttatcaaat tcaaaagctt gtgctctttc catgaataaa tgtctctatc taggactcag 1140 aggtgtaggt cctttccaac atagaaggga gtgaacctca acgggacttg ggaggttaaa 1200 tctaggcatg ggaaggaagg tattttaccc agggaccaag agaatacgcg tgtcagaacg 1260 aggccaggct taattcctgg acctatctcg tcattccgtt gaactctcag atttatgtgg 1320 ataactttat ctctgaggta tccaggagct tcatgaaaaa tgggatttca tgcgagaacg 1380 ccctgatccc tctaagtgca gaggtgcatg taaaatcagc ccgactgcct cttcgctggg 1440 ttcacaggct caggcaggga cagggctttc ctccctttcc tggatgtagg aaggcagatt 1500 ccagaagccc gcaaagaagg cgggcagagc tgggcagagc cgccgggagg atcccaggtc 1560 tggagcgcca ggcacgggcg ggcgggaact ggaggtcgcg cgggcggttc cacagctcca 1620 ggccgggtca gggcggcggc tgcgggggcg gccgggctgg ggcctgactg accggccggt 1680 gattccccgc agaggatttc gtgtaccagt ttaagggcat gtgctacttc accaacggga 1740 cggagcgcgt gcgtcttgta accagacaca tctataaccg agaggagtac gcacgcttcg 1800 acagcgacgt ggaggtgtac cgcgcggtga cgccgcaggg gcggcctgat gccgagtact 1860 ggaacagcca gaaggaagtc ctggagggga cccgggcgga gttggacacg gtgtgcagac 1920 acaactacga ggtggcgttc cgcgggatct tgcagaggag aggtgagcgt cgtcgcccct 1980 ccgtgaggcc cacccttggc cgagaccccg agtttctgtg ccgggagggg cgatgggggc 2040 gaggtctctg aaatctgagc ccagttcatt ccaccccagg ggaaaggagg cggcggcggg 2100 gtggtggggg caggtgcatc ggaggggcgg ggacctaggg cagagcaggg ggacaagcag 2160 agttggccag gctgcctagt gtccccccca gcctccccgt ccgtcggcct cgtcctccgc 2220 tctgcacgtt tctcgcctcg tgccttatgt gtttgcctcc tcgtacctta ccttcgctaa 2280 gcagttctct ctgcccccag tgcccaccct cttcccctgc ccgccggcct cgctagcact 2340 gccccaccca gcaaggccca cgtgcgcagc ttgcgccgca ggaagcttca ggcttggcct 2400 ggtggagtta gggctgcccc acagctgcgc gcagggcatc cagcaattac agttgcgaaa 2460 taagatattt tgactttttg gcttcaaatc attattcatc gtaattctgt tttcttaaat 2520 ggctaccact aatggcggag atctttgagg cgagagactg tttaattatt gcatgcctgg 2580 tacctgacac attgactggt atgtggtgtg agctcaatga tcttctgtta aattcatgaa 2640 taaatgtact cagctgccaa tccagttagg ttcaagaaaa aaacagaggc ttacaaatga 2700 actttatcaa ttattttcta acattttgct taatgctttc aagtaaactc ttactgactt 2760 ggatcttaat agaatttgtg aatacaaagt ctgaggaaaa tgtgtttgct aaaaataaaa 2820 acaatgcttg aatgatgttg taaggcagag ttttaatttc ttagaaaagc tgaacaaata 2880 gcactatgca aagatcagaa gtttgggaat aaataggttg aagctattaa attattggat 2940 aaaaatagtt tcaggttgct tttggcctag gttatcccct cccccccatc actatccact 3000 tcaggaataa acattctgaa agtcaatttt acccattcag gaagcactta tttctagaca 3060 gttgccttat caaataccat ctatgttatg tcatttaatc tcacagctac ctgtgcatta 3120 gagattagca tcaccacttt atatatccta atattggtac atgataaaca ctttaagtaa 3180 tcagcccaca attactcacc aagatcttaa gcctcccaaa gtacacaaca ttcttatgtt 3240 cctcactaca catatgtaga gtctaaggga tgtaaggcct tgttaaagcc agttttgacc 3300 agaagcagca atgagtctat tcctgtttgt tctgtgtgtt aatgcggcat tgaaaattca 3360 tgattaatca atccctagtc tgaccccggt gttatctatg caggttcaca aaacttttag 3420 tttgctttac actcccttgc cttcttttga ctcacatcct aatgccagca agtacttata 3480 tttttgctat ttcagtttta tttccataaa atttatttta tcatcttttc tcataaattt 3540 gtgccctcta tttttactcc cagtctgttg aagatgaaca aatcttataa ggccacatag 3600 ctgactctga tttcagttgg cctccaggaa ggagaaccta aagaaaagtt caagtccaag 3660 cagaaaccat gattccttcc ggatgatggc tcaagagtgc catttaattg gggtgccacc 3720 tgctgacctc agcaaatccc agttatatgt atatgttcac attacaggct cattagccca 3780 ggccgacctc tgcacggatc tcagaatatt ttctgtggag aacatacacg ataatgtctg 3840 atttcagaac aagaaagtaa ttgtcaatag caaggaaatg gagtagggta gacagctagt 3900 aattaaactc acttgtgcgt taaaaagaaa ttaaggaaaa aaagaaaatg agagaacata 3960 ttactaaata aagaaagcac acattaaata tttgctatag tttcacacta agagaataaa 4020 ggaaatgtga taaagtggcc taaaaggaaa ggatgagatg tgtaaaagag gcggggaaag 4080 atgtgtcatt tttttttact atgagcagca atctgagaag ataaaggaat tgagttgtgg 4140 acaaacatga tgtttgatca agggttattt gttttgaagg cctgcctact tttttttcaa 4200 atattacaaa cttttgaaat aacattctac ttttttttca aatattacaa acttttgaaa 4260 taacattctt tttgtttttt gctgtctgtt actagattgc acattctata aatgcaggga 4320 ccatagtatg ttatttatct ttgaattctc agtgattgtc aaatttatat ttgttgaatg 4380 aaccttaatc caagacttcg actccaggta tctttccact ctggtccaag gagggatcct 4440 tcctcatggt agacgtggtg tgtgttctca catctcactc ctatgtcttt tcctgtctgt 4500 tactgccctc agtggagccc acagtgacca tctccccatc caggacagag gccctcaacc 4560 accacaacct gctggtctgc tcggtgacag atttctatcc aggccagatc aaagtccggt 4620 ggtttcggaa tgatcaggag gagacagccg gcgttgtgtc cacccccctt attaggaatg 4680 gtgactggac tttccagatc ctggtgatgc tggaaatgac tccccagcgt ggagatgtct 4740 acacctgcca cgtggagcac cccagcctcc agagccccat caccgtggag tggcgtaagg 4800 ggatattgag tttctgttac tatgggccca caagacaaag agctccttct gacccattcc 4860 ttcccatctc ttatccctga tgtcactact gagctgggaa tcacaggaga ctagagcacc 4920 tcttgctcca tggcaagtgc atcagaagaa tcctggtctc atcacctttc cagatgctag 4980 ggaaattact ctacatactg ttgctctgaa tcccagtcct gatagctctg agggactgat 5040 tcttagggct ggtgactggg atcttagggt ctaaggttat ggatgagttc ttgaagagca 5100 gagatttgct tccccactct ctcacctatt cactgtatcc aaggacctat tggctggtct 5160 ttcccctcct taggggtggt ctgaatggag aactaggttc ctttgatgcc ttcaccttct 5220 gcacctcaga ctggacttca actcctcagc agggatgcta tggggtgtgg ggacaaacac 5280 agacactcag ttctgctctt taggggctca gtctgaatct gcccagagca agatgctgag 5340 tggcgttgga ggcttcgtgc tggggctgat cttccttggg ctgggcctta tcatccgtca 5400 aaggagtcag aaaggtgagg aaccccaggg gaaaagggga agatgggctg tgacccagac 5460 cctctgttca gagtggtcct gtctgtagat tagctctttc ctcctgaccc tgagaagaag 5520 tgcgaggaga caggacaaga tgggaggagg cattggaatc tgattttact ggttgaaagg 5580 tagcgctgtc acagagctga ctgatagagc ttattccagg gcatccttac cattcatcat 5640 tgtctcactg gctcctttcc aaaagcttcc tccattaaga gggtcagagc ctcagcttcc 5700 tttctttcta gtgacaattt cctttgtttt aggggatttt aaattagggt gctgaaggcc 5760 tggaagaaca tgggtgggaa gagaatgtaa ctctaagtca tgtgtgtcat tttcctttgg 5820 ggtgagagag tggctgtttg tgtaatgaga cctttctctg cataacttcc ttttgtaaga 5880 cctcaagggc ctccaccagc aggtaatatt tcagccatga tccagtgtgg ggaggcacag 5940 gtataagagg gaagagcatg agctgagtgt acctgaccac agtggtccat gttcatggcc 6000 tatttgctgc tatgaggatc aagacttagg ggagaagttt gccagtttct aggaatctcc 6060 agacattgtt ccccagaacc aagccttaac tttggtggca tcttcttgtg aaatgtggag 6120 ccagaaccac agcttaaatg ttagacacta ggatgatgcc cactttgtgc cacatgatgg 6180 tggctactgc ctgtaagcat tttccagtga ctgaaagagg ctgctagtgg tcgggaagag 6240 atatcatcca atttcctaaa aagactgaac ccttcatatt ccccagaaga ataacagctg 6300 ttccccacct cccacacatc tgcatcaagc tgaagttctg tgtcctcatg agctgatttc 6360 acctttgcac agatcttggg ggaggtgatg acaatacacc ctggacctca actttctctg 6420 tctgaagctg cagggggccc ctgaagggtg ggggagatgg caggcccacc aggataccct 6480 gtgctgatca atgctcttct ctcttctcca gggcttctgc actgactcct gagactattt 6540 taactaggat tggttatcac tcttctgtga tgcctgcttg tgcctgccca gaattcccag 6600 ctgcctgtgt cagcttgtcc ccctgagatc aaagtcctac agtggctgtc acgcagccac 6660 caggtcatct cctttcatcc c 6681 //