Dbfetch
ID OX333408; SV 1; linear; genomic DNA; STD; HUM; 6679 BP. XX AC OX333408; XX PR Project:PRJEB55785; XX DT 10-SEP-2022 (Rel. 144, Created) DT 14-APR-2023 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 pseudogene, cell line DKMS-LSL_ID20179120_DQB1_1, DE null allele HLA-DQB1*06:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.; RT ; RL Submitted (06-SEP-2022) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2, RL Saxony, 01069 Dresden, Germany XX DR MD5; e076db1f928e5d755caa8c5295c48cc5. XX FH Key Location/Qualifiers FH FT source 1..6679 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID20179120_DQB1_1" FT /db_xref="taxon:9606" FT exon 1..261 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=1 FT CDS join(153..261,1693..1961,4511..4792,5302..5412,6510..6523) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /note="MHC class II antigen null allele" FT /pseudogene="allelic" FT intron 262..1692 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=1 FT exon 1693..1961 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT intron 1962..4510 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT exon 4511..4792 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT intron 4793..5301 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT exon 5302..5412 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT intron 5413..5876 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT exon 5877..5900 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=5 FT intron 5901..6509 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=5 FT exon 6510..6679 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=6 XX SQ Sequence 6679 BP; 1681 A; 1533 C; 1633 G; 1832 T; 0 other; cagctccagt gctgattggt tcttttccga gggaccatcc aatcctgcca ctcacggaaa 60 catccacagg tttttattct ttctgccagg tacatcagat ccatcaggtc cgagctgtgt 120 tgactaccac tgcttttccc ttcgtctcag ttatgtcttg gaagaaggct ttgcggatcc 180 ccggagacct tcgggtagca actgtcacct tgatgctggc gatgctgagc tccctactgg 240 ctgagggcag agactctccc ggtaagtgca gggcagctgc tctccagagc cgccactctg 300 ggaacaggct ctccttgggc tggggtatgg gggatggtga tctctatgat cttggacaca 360 atctttcatc aacatttcct ctctcttggg aaagaaagct atgttgcatt cccatttatc 420 ttttagtgat gagatgagga caatccaatc cccatcctac aggcttaagc ctggaagagg 480 aggagagagg agagaaagag gagataaagt gtacatttac taccagcgat aggacaaagt 540 gagcatgggg ttatttttga agatatgaat ttctccaaag acacagcagg atttgtcatt 600 taggcgtgcc ccaagactgc ctggacttag gattatgaga tcctgcattg gaaaatgtga 660 ggcagcaatg gtgtctgtag tttctgtatt tgaggaaaat ttgtctctat tcctgaccga 720 gtggagcatt tgtggaggca aaatcttggt gctgagggaa gctgactggc tgaccacaga 780 gagggagtct tcgggtttca ctgatttatg ggcaaatggt gacttgagtg ggattcagag 840 acccgagtta atggtggact gaatttagta ggaaggagga tgtaaagaag ggaaataaca 900 catattgtga aaccactcac ttcagacaga acaatacttt atataacttc tctctcactc 960 cttctaacat cctgtgtgta gatatcatga ttttctttta cacaattata cttgtgatat 1020 ggatattctg ttacataacc tgcccaaact ggtgactgcc acagtttaat tggaatctag 1080 tttatcaaat tcaaaagctt gtgctctttc catgaataaa tgtctctatc taggactcag 1140 aggtgtaggt cctttccaac atagaaggga gtgaacctca acgggacttg ggagggtaaa 1200 tctaggcatg ggaaggaagg tattttaccc agggaccaag agaatacgcg tgtcagaacg 1260 aggccaggct taattcctgg acctatctcg tcattccgtt gaactctcag atttatgtgg 1320 ataactttat ctctgaggta tccaggagct tcatgaaaaa tgggatttca tgcgagaacg 1380 ccctgatccc tctaagtgca gaggtgcatg taaaatcagc ccgactgcct cttcgctggg 1440 ttcacaggct caggcaggga cagggctttc ctccctttcc tggatgtagg aaggcagatt 1500 ccagaagccc gcaaagaagg cgggcagagc tgggcagagc cgccgggagg atcccaggtc 1560 tggagcgcca ggcacgggcg ggcgggaact ggaggtcgcg cgggcggttc cacagctcca 1620 ggccgggtca gggcggcggc tgcgggggcg gccgggctgg ggcctgactg accggccggt 1680 gattccccgc agaggatttc gtgtaccagt ttaagggcat gtgctacttc accaacggga 1740 cggagcgcgt gcgtcttgta accagacaca tctataaccg agaggagtac gcgcgcttcg 1800 acagcgacgt gggggtgtac cgggcggtga cgccgcaggg gcggcctgtt gccgagtact 1860 gaacagccag aaggaagtcc tggagaggac ccgggcggag ttggacacgg tgtgcagaca 1920 caactacgag gtggggtacc gcgggatcct gcagaggaga ggtgagcgtc gtcgcccctc 1980 cgtgaggcgc acccttggcc gggaccccga gtctctgtgc cgggaggggc gatgggggcg 2040 aggtctctga aatctgagcc cagttcattc caccccaggg gaaaggaggc ggcggcgggg 2100 tggtgggggc aggtgcatcg gaggggcggg gacctagggc agagcagggg gacaagcaga 2160 gttggccagg ctgcctagtg tcccccccag cctccccgtc cgtcggcctc gtcctctgct 2220 ctgcacgttt ctcgcctcgt gccttatgcg tttgcctcct cgtgccttac cttcgctaag 2280 cagttctctc tgcccccagt gcccaccctc ttcccctgcc cgccggcctc gctagcactg 2340 ccccacccag caaggcccac gtgcgcagct tgcgccgcag gaagcttcag gcttggcctg 2400 gtggagttag ggctgcccca caactgcgcg cagggcatcc agcaattaca gttgcaaaat 2460 aagatatttt gactttttgg cttcaaatca ttattcatcg taattctgtt ttcttaaatg 2520 gctaccacta atggcggaga tctttgaggc gagagactgt ttaattattg catgcctggt 2580 acctgacaca ttgactggta tgtggtgtga gctcaatgat cttctgttaa attcatgaat 2640 aaatgtactc agctgccaat ccagttaggt tcaagaaaaa aacagaggct tacaaatgaa 2700 ctttatcaat tattttctat cattttgctt aatgctttca agtaaactct tactgacttg 2760 gatcttaata gaatttgtga atacaaagtc tgaggaaaat gtgtttgcta aaaataaaaa 2820 caatgcttga atgatgttgt aaggcagagt tttaatttct tagaaaagct gaacaaatag 2880 cactatgcaa agatcagaag tttgggaata aataggttga agctattaaa ttattggata 2940 aaaatagttt caggttgctt ttggcctagg ttatcccctc ctcccatcac tatccacttc 3000 aggaataaac attctgaaag tcaattttac ccattcagga agcacttatt tctagacagt 3060 tgccttatca aataccatct atattatgtc atttaatctc gcagctacct gtgcattaga 3120 gattagcatc accactttat atatcctaat attggtacat gataaacact ttaagtaatc 3180 agcccacaat tactcaccaa gatcttaagc ctcccaaagt acacaacatt cttatgttcc 3240 tcactacaca tctgtagagt ctaagggatg taaggccttg ttaaagccag ttttgaccag 3300 aagcagcaat gagtctattc ctgtttgttc tccatgttaa tgcggcattg aaaattcatg 3360 attaatcaat ccctagtctg accccagtgt tatctatgca ggttcacaaa acttttagtt 3420 tgctttacac tcccttgcct tcttttgact cacatcctaa tgccagcaag tacttatatt 3480 tttgctattt cagttttatt tccatgaaat ttattttatc atcttttctc ataaatttgt 3540 gccctctatt tttactccca gtctgttgaa gatgaacaaa tcttataagg ccacatagct 3600 gactctgatt tcagttggcc tccaggaagg agaacctaaa gaaaagttca agtccaagca 3660 gaaaccatga ttccttccgg atgatggctc aagagtgcca tttaattggg gtgccacctg 3720 ctgacctcag caaatcccag ttatatgtat atgttcacat tacaggctca ttagcccagg 3780 ccgacctctg cacggatctc agaatatttt ctgtggagaa catacacgat aatgtctgat 3840 ttcagaacaa gaaagtaatt gtcaatagca aggaaatgga gtagggtaga cagctagtaa 3900 ttaaactcac ttgtgcgtta aaaagaaatt aaggaaaaaa agaaaatgag agaacatatt 3960 actaaataaa gaaagcacac attaaatatt tgctatagtt tcacactaag agaataaagg 4020 aaatgtgata aagtggccta aaaggtaaag gatgagatgt gtaaaagagg cggggaaaga 4080 tgtgtcattt tttttactat gagcagcaat ctgagaagat aaaggaattg agttgtggac 4140 aaacatgatg tttgatcaag ggttatttgt tttgaaggcc tgcctacttt tttttcaaat 4200 attacaaact tttgaaataa cattctactt ttttttcaaa tattacaaac ttttgaaata 4260 acattctttt tgttttttgc tgtctgttac tagattgcac attctataaa tgcagggacc 4320 atggtatgtt atttatcttt gaattctcag tgattgtcaa atttatattt gttgaatgaa 4380 ccttaatcca agacttggac tccaggtatc tttccactct ggtccaagga gggatccttc 4440 ctcatggtag acgtggtgtg tgttctcaca tctcactcct atgtcttttc ctgtctgtta 4500 ctgccctcag tggagcccac agtgaccatc tccccatcca ggacagaggc cctcaaccac 4560 cacaacctgc tggtctgctc ggtgacagat ttctatccag gccagatcaa agtccagtgg 4620 tttcggaatg atcaggagga gacagccggc gttgtgtcca ccccccttat taggaatggt 4680 gactggactt tccagatcct ggtgatgctg gaaatgactc cccagcgtgg agatgtctac 4740 acctgccacg tggagcaccc cagcctccag agccccatca ccgtggagtg gcgtaagggg 4800 atattgagtt tctgttacta tgggcccaca agacaaagag ctccttctga cccattcctt 4860 cccatctctt atccctgatg tcactactga gctgggaatc acaggagact agagcacctc 4920 ttgctccatg gcaagtgcat cagaagaatc ctggtctcat cacctttcca gatgctaggg 4980 aaattactct gcatactgtt gctctgaatc ccagtcctga tagctctgag ggactgattc 5040 ttagggctgg tgactgggat cttagggtct aaggttatgg atgagttctt gaagagcaga 5100 gatttgcttc cccactctct cacctattca ctgtatccaa ggacctattg gctggtcttt 5160 cccctcctta ggggtggtct gaatggagaa ctagtttcct ttgatgcctt caccttctgc 5220 acctcagact ggacttcaac tcctcagcag ggatgctatg gggtgtgggg acaaacacag 5280 acactcagtt ctgctcttta ggggctcagt ctgaatctgc ccagagcaag atgctgagtg 5340 gcgttggagg cttcgtgctg gggctgatct tccttgggct gggccttatc atccgtcaaa 5400 ggagtcagaa aggtgaggaa ccccagggga aaaggggaag atgggctgtg acccagaccc 5460 tctgttcaga gtggtcctgt ctgtagatta gctctttcct cctcaccctg agaggaagtg 5520 cgaggagaca ggacaagatg ggaggaggca ttggaatctg attttactgg ttgaaaggta 5580 gcgctgtcac agagctgact gatagagctt attccagggc atccttacca ttcatcattg 5640 tctcactggc tcctttccaa aagcttcctc cattaagagg gtcagagcct caacttcctt 5700 tctttctagt gacaatttcc tttgttttag gggattttaa attagggtgc tgaaggcctg 5760 gaagaacatg ggtgggaaga gaatgtaact ctaagtcatg tgtgtcattt tcctttgggg 5820 tgagagagtg gctgtttgtg taatgagacc tttctctgca taacttcctt ttgtaagacc 5880 tcaagggcct ccaccagcag gtaatatttc agccatgatc cagtgtgggt aggcacaggt 5940 ataagaggga agagcatgag ctgagtgtac ctgaccacag tggtccatgt tcatggccta 6000 tttgctgcta tgaggatcaa gacttagggg agaagtttgc cagtttctag gaatctccag 6060 acattgttcc ccagaaccaa gccttaactt tggtggcatc ttcttgtgaa atgtggagcc 6120 agaaccacag cttaaatgtt agacactagg atgatgccca ctttgtgcca catgatggtg 6180 gctactgcct gtaggcattt tccagtgact gaaagaggct gctagtggtc gggaagagat 6240 atcatccaat ttcctaaaaa gactgaaccc ttcatattcc ccagaagaat aacagctgtt 6300 ccccacctcc ctcacatctg catcaagctg aagttctgtg tcctcatgag ctgatttcac 6360 ctttgcacag atcttggggg aggtgatgac aatacaccct ggacctcaac tttctctgtc 6420 tgaagctgca gggggccgct gaagggtggg ggagatggca ggcccaccag gataccctgt 6480 gctgatcaat gctcttctct cttctccagg gcttctgcac tgactcctga gactatttta 6540 actaggattg gttatcactc ttctgtgatg cctgcttgtg cctgcccaga attcccagct 6600 gcctgtgtca gcttgtcccc ctgagatcaa agtcctacag tggctgtcac gcagccacca 6660 ggtcatctcc tttcatccc 6679 //