Dbfetch
ID OX333405; SV 1; linear; genomic DNA; STD; HUM; 7053 BP. XX AC OX333405; XX PR Project:PRJEB55785; XX DT 10-SEP-2022 (Rel. 144, Created) DT 14-APR-2023 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL_ID20126211_DQB1_1, allele HLA-DQB1*02:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.; RT ; RL Submitted (06-SEP-2022) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2, RL Saxony, 01069 Dresden, Germany XX DR MD5; 02bebae9e292f439da9dea16a06a97f3. XX FH Key Location/Qualifiers FH FT source 1..7053 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID20126211_DQB1_1" FT /db_xref="taxon:9606" FT exon 1..258 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=1 FT CDS join(150..258,1697..1966,4855..5136,5653..5763,6884..6897) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAI2365562.1" FT /translation="MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKR FT AAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" FT intron 259..1696 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=1 FT exon 1697..1966 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=2 FT intron 1967..4854 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=2 FT exon 4855..5136 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=3 FT intron 5137..5652 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=3 FT exon 5653..5763 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=4 FT intron 5764..6248 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=4 FT exon 6249..6272 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=5 FT intron 6273..6883 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=5 FT exon 6884..7053 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=6 XX SQ Sequence 7053 BP; 1765 A; 1637 C; 1709 G; 1942 T; 0 other; cagctccagt gctgattggt tcctttccaa gggaccatcc aatcctacca cgcatggaaa 60 catccacaga tttttattct ttctgccagg tacatcagat ccatcaggtc cgagctgtgt 120 tgactaccac ttttcccttc gtctcaatta tgtcttggaa aaaggctttg cggatccccg 180 gaggccttcg ggcagcaact gtgaccttga tgctgtcgat gctgagcacc ccagtggctg 240 agggcagaga ctctcccggt aagtgcaggg cagctgctct ccagagccgc tactctggga 300 acaggctctc cttgggctgg ggtacgggga tggtgatctc cataatctcg gacacaatct 360 tttatcaaca tttcctctgt tttgggaaag agagctatgt tgcatttcca tttatctttt 420 aatgatgaag tgaggacaat ccaatcccat cctacaggct taagcctgga agaggaggag 480 agaggagaga aaagaggaga caaagtgttc atttactacc agtgatagga caaagtgagc 540 atggggttat ttttgaagat atgaatttct ccaaagacac agcaggattt gccatttagg 600 cgtgtcccaa gacttgcctg gactaaatat tatgatttcc tgcattggga aatgcaaggc 660 agcaatggtg tctgtagtct ccgtatttgg ggaaaagttg tctgtattcc tgacccagtg 720 gagcgtttgt ggaggcaaaa tcttggtact gagggaagct gactggctga ccacagaaag 780 agagccttca ggtttcactg atttatgggc aaatggtgac ctgagtggga ttcagatacc 840 cgagttgatg atggactaaa tttagtagaa aggaggatgt aaagaaggga aataacacat 900 actgtgaaac cactcatttc agacacagaa caatacttta cataaattct ctctcactcc 960 ttctaacatc ctgtgtgtag atatcatgat tttcttttac acaattatac ttgtgatatg 1020 gatattctgt tacataacct gcccgggctg gtgactgcca cagtttaatg ggaatctagt 1080 ttatcaaatt caaaagcttg tgctctttcg gtgaataaat gtttctttct aggactcaga 1140 gatctaggac tcccttcttt ctaacacaga agtgagtgaa cctcacaggg cacttgggag 1200 ggtaaatcca ggcatgggaa ggaaggtatt ttacccaggg accaagagaa taggcgtatc 1260 ggaagaggac aggtttaatt cctggacctg tctcgtcatt cccttgaact gtcaggttta 1320 tgtggataac tttatctctg aggtacccag gagctccatg gaaaatgaga tttcatgcga 1380 gaacgccctg atccctctaa gtgcagaggt ccatgtaaaa tcagcccgac tgcctcttca 1440 cttggttcac aggccgagac agggacaggg ctttcctccc tttcctgcct ttaggaaggc 1500 ggattcccga agacccccga gagggcgggc agggctgggc agagccgccg ggaggatccc 1560 aggtctgcag cgcgaggcac gggccggcgg gaacttgtgg tcgcgcgggc tgttccacag 1620 ctccgggccg ggtcagggtg gcggctgcgg gggcggacgg gctgggccgc actgactggc 1680 cggtgattcc tcgcagagga tttcgtgtac cagtttaagg gcatgtgcta cttcaccaac 1740 gggacagagc gcgtgcgtct tgtgagcaga agcatctata accgagaaga gatcgtgcgc 1800 ttcgacagcg acgtggggga gttccgggcg gtgacgctgc tggggctgcc tgccgccgag 1860 tactggaaca gccagaagga catcctggag aggaaacggg cggcggtgga cagggtgtgc 1920 agacacaact accagttgga gctccgcacg accttgcagc ggcgaggtga gcggcgtcgc 1980 ccctctgcga ggcccaccct tggccccaag tctctgcgcc aggaggggcg aagggtcgtt 2040 gcctctggaa cctgagcccc gtttgttcca ccccagagga caggaggcag cggcgagagt 2100 ggtgggggca ggtgcatcgg aggtgcgggg acctagggca gagcaggggg acaggcagag 2160 ttggccaggc tgcctagtgt cgccccagcc tacccgttcg tcggccttgt cctctgctct 2220 gcatgttctt gcctcgtgcc ttatgcattt gcctcctttt gccttacctt tgctaagcag 2280 ctctctctgc tcagaatgcc cgccctcttc ccctgcccgc ccgcccgccc cgctagcact 2340 gccccaccca gcaaggccca cgtgcacagc tcttgcagca ggaagcttca ggcttagcct 2400 ggtggagtta gggctgttcc acaactgcgc gcaggacatc cagcaattac agttgtgaaa 2460 taagatattt taacttttgg cttcaaatca ttattcatcg taattctgtt ttcttaaatg 2520 gctctcattc atggcagaga tctttgaggt gagggtgttt taatcattgc atgcctagta 2580 cctgacacat tgactggtat gtggtgtgag ctcaatgatc ttctgttaaa ttaatgaata 2640 aatgtactca gctgcccatc cacttaggct caagaaaaaa aaagaggtaa acagagcctt 2700 aaaaatggac tttattaatt attttctata attttgctta atgctttaaa gtaaactctt 2760 attgacttgg atcttaatag agtttgtgaa tacaaaatct gaggaaaaaa gtttttgcta 2820 aaaataaaaa caacgcttga aagatattgt aatgcagttt aaatttcttt tctttctttt 2880 tttttttttt ttgagacgga ttctcactct gtcgcccagg ccggagtgca gtggcgcgat 2940 ctcggctcac tgcaagctcc gcctcccggg ttcacgccat tctcctgcct cagcctcctg 3000 agtaggtggg attacaggcg cgtgccacca cgcccggcta atttttttgt atttttagta 3060 gaggcggggt ttcaccgtgt tagccaggat ggtctggatc tcctgacctc atgatccgcc 3120 cgcctcggcc tcccaaagtg ctgggattac aggtgtgagc cacagtgccc ggccggcact 3180 tttaatttct tagaaaagct gaacaaatgg cacaatgcaa agagcaaaag ttttggaata 3240 aatagattga agccattaaa ttattggata aaaatagttt cgggttgctt ttggcctagg 3300 ttctcccctc cccccatgac tatccacttc aggaataaac attctgaaag tcaattttac 3360 ccatttagtg agcatttatt tctagacagt tgccttatca aataccatct atgttacgtc 3420 atttaatctc acagttactt gtgcatcaga gattagcatc accactttat atattggtac 3480 atgataaaca ctttattggt catggatggg gagatggtca ctgtaggcta atattggtac 3540 atgataaaca ctttaagtaa tcagcccata attgctcacc aagaccttaa gcctcccaaa 3600 gtacacaaca ttctttgtgt tcttcactac acatccatag agtctaaggg acgtaaagcc 3660 tcgttaaagc cagttttgac cagaagcagc aatgagtcta ttcctgtgtg ttttccatgt 3720 taatgggaca aaatgatact ttcaaggcat tgaaaattca tgattaatca atcgctagtc 3780 tgaccccagt gttatctatg caggtttgca aaacctttag tttacttaat actcccttgc 3840 cttcttttga ttcacatcct aatgccagca aatacttatg tttttgctat ttcagttcca 3900 tttccataaa atttatttta tcatcttttc tcataaattt atgccctcta tttttactcc 3960 caatctgttt aagatgaaca aatcttataa ggccacatag ctgactgtta tttctgttgg 4020 actccaggaa ggagaaccta aagaaaagtt caagtccaag cagaaaccgt gatttcttcc 4080 agatgatggc tcatgagtgc catttaattg gggtgccacc tggtgacctc agcaaatccc 4140 agctatattt atgtgttcac attacaggat cattaaccca gaccgaccac tgcacagatc 4200 tcagaatatt ttctatggag aacatacata ataatgcctg atttcagaag aagaaagtaa 4260 ttctcaatag caaggggatg gagtagggta gacagctgta attaaactca cttgtgtgat 4320 aaaaagaaat taaggaaaaa agaaaatgag agaacatatt actaaataaa gaaagcatac 4380 attaaatatt tactatagtt tcacactaag agaataaagg aaatgcaata aagtggcctg 4440 aaaggtaaag gatgagatgt gtaaaggggt gtagtatttt tactatgagc agcaatctga 4500 gaagataaag gaatcgagtt acgggcaaac atgatgtttg atcagtgtta tttgttttca 4560 aggcctgcct aaattttttt caaatattac aaacttttga aataacattc tttttgtttt 4620 ttgctgtctg ttactaggtt gcacatttta taaaggcagg gaccatggta tgttgtttgt 4680 ctttggattc tcagtgattg ttatatttat atttgttgaa ggaaccttaa tccaagactt 4740 ggactccaag tatctttcca ctctggttcc aaggagggac cttcctcaca gcaggcatgc 4800 tgtgtggtct cacatctcac tcctatatct ttccctgtct gttactgccc tcagtggagc 4860 ccacagtgac catctcccca tccaggacag aggccctcaa ccaccacaac ctgctggtct 4920 gctcggtgac agatttctat ccagcccaga tcaaagtccg gtggtttcgg aatggccagg 4980 aagagacagc tggcgttgtg tccacccccc ttattaggaa tggtgactgg accttccaga 5040 tcctggtgat gctggaaatg actccccagc gtggagacgt ctacacctgc cacgtggagc 5100 accccagcct ccagagcccc atcaccgtgg agtggcgtaa ggggatattg agtttctgtt 5160 actgtgggcc ccacaagaca aaggacagag ctccttctga cccatccctt cccatctctt 5220 atccctgatg tcactgctga gctgggaatc acaggagact agagcacctc tagttccatg 5280 gcgagtgcat cagaagaatc ctgatctcat cacctttcca gatgctaggg aaattactct 5340 acatactgtt gctctggatc ccagtcctga ttgctctgag gaactgatta ttagggctgg 5400 tgactgggat cttagggtct aagtttatgg atgagttcct gaggagtgga gatctgcttc 5460 cccactctgt cacctactca ctgtatccaa gtacctattg gctggccttt ccctccctta 5520 ggggtggtct gaatggagaa ctaggttcct ttgatgcctt cacctcctgc atctcagact 5580 ggacttcagc tcctcatcag ggaaactatg gggtatgggg acaaacactg acactcaggc 5640 tctgcttctc aggggctcaa tctgaatctg cccagagcaa gatgctgagt ggcattggag 5700 gcttcgtgct ggggctgatc ttcctcgggc tgggccttat catccatcac aggagtcaga 5760 aaggtgagga accccagggg aaaaggggaa gatggcctgt gacccagacc ctctgttcag 5820 agaggtcctg tctctagatg tagctctttc ctcctgaccc tgagaggaag aaagctgagc 5880 tggaagtgga aggagacagg acaaggttgg aggaggcatt ggaatctgat tttactagct 5940 gaagggtagc cctgtcacag agctgactga tagagcttat tccagggcat ccttaccatt 6000 catcattgtc tcactggctc ctttccaaaa acttcctcca ttaagagggt cagagcctcg 6060 gcctccttgc cttctagtga caatttcctt tattttaggg gattttaaat tagggtgctt 6120 aaggacttga agaacatgaa tgggaagaga atataactct aattaagtca catgtgtcat 6180 tttcctttgg ggtgagagag tggctgttca tgtaatgaga cctttctctg cataacttcc 6240 ttttgtaaga cctcaagggc ctccaccagc aggtaatatt tcagccgtga tccagtgtgg 6300 ggagggcaca ggtgtaagag ggaagagcat gagctgagtg tacctgacag tagtggtctc 6360 tgttcatggt atatttgctg ctatgaggat caagacttag gggtgaagtt tgccagtttc 6420 taggaatctc cagaggttgt tccccagaac caagccttaa ctttggtggt atcttcctgt 6480 gaaatgtgga gccagaacca cggcttaaat gttagacact aggatgatgc ccactttgtg 6540 ccacatgatg gtggctactg cctgtaggca ttttccagtg actgaaagag gctgctagtg 6600 gtagggatga ggtatcatcc aatttcctaa aaagattgaa cccttcatat tcaccagaag 6660 agtaacagct gttcccccac ctcccacaca tctgcatcaa gctgaagttc tgtgtcttca 6720 tgagctgatt tcacctttgc acagatcttg ggggaggtga tgataataca ctctggacct 6780 cagctttgtc tgtctgaagc tgcaggaggc ccctgagggg tgggggagat ggcaggccca 6840 ccagcgtacc ctgtgctgat catccctctt ctctcttctt cagggctcct gcactgactc 6900 ctgagactat tttaactggg attggttatc acttttctgt aacgcctgct tgtccctgcc 6960 cagaattccc agctgtctgt gtcagcctgt ccccctgaga tcagagtcct acagtggctg 7020 tcacgcagcc accaggtcat ctcctttcat ccc 7053 //