Dbfetch
ID OX333373; SV 1; linear; genomic DNA; STD; HUM; 6699 BP. XX AC OX333373; XX PR Project:PRJEB55785; XX DT 10-SEP-2022 (Rel. 144, Created) DT 14-APR-2023 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL_ID20366018_DQB1_1, allele HLA-DQB1*03:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.; RT ; RL Submitted (06-SEP-2022) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2, RL Saxony, 01069 Dresden, Germany XX DR MD5; 661702279c44d64d28aa7ae9f5556915. XX FH Key Location/Qualifiers FH FT source 1..6699 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID20366018_DQB1_1" FT /db_xref="taxon:9606" FT exon 1..261 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=1 FT CDS join(153..261,1706..1975,4506..4787,5303..5413,6530..6543) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAI2365321.1" FT /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTR FT AELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHSSLQNPIIVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" FT intron 262..1705 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=1 FT exon 1706..1975 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=2 FT intron 1976..4505 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=2 FT exon 4506..4787 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=3 FT intron 4788..5302 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=3 FT exon 5303..5413 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=4 FT intron 5414..5895 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=4 FT exon 5896..5919 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=5 FT intron 5920..6529 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=5 FT exon 6530..6699 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=6 XX SQ Sequence 6699 BP; 1686 A; 1543 C; 1637 G; 1833 T; 0 other; cagctccagt gctgattggt tcctttccaa aggaccatcc aatcctgcca cgcagggaaa 60 catccacagg tttttattct ttctgccagg tacatcagat ccatcaggtc caagctgtgt 120 tgactaccac tacttttccc ttcgtctcaa ttatgtcttg gaagaaggct ttgcggatcc 180 ctggaggcct tcgggtagca actgtgacct tgatgctggc gatgctgagc accccggtgg 240 ctgagggcag agactctccc ggtaagtgca gggccactgc tctccagagc cgccactctg 300 ggaacaggct ctccttgggc tggggtaggg ggatggtgat ctccatgatc tcggacacaa 360 tctttcatca acatttcctc tctttgggga aagagaacga tgttgcattc ccatttatct 420 tttagtgatg aggtgagcac agtcggatcc ccatcctaca ggcttaagcc tggaagagaa 480 ggagagagga gaggaaagag gagacaaagt gtacatttac taccagtgac aggacaaagt 540 gagcatgggg ttatttttga agatacgaat ttctccagag acacagcagg atttgtcatt 600 taggcgtgcc ccaagacttt gcctggacta aatattatgg gatcctgcat tgggaaatgt 660 aaggcagcaa tggtgtctgt agtctccgta tttgaggaaa agttgtctgt attcctgact 720 gactggagcg tttgtggagg caaaatcttg gtactgaagg aagctgactg gatgaccaca 780 gacagggagt cttcaggttt cactgattta tgggcaaatg gtgacttgag tgggattcag 840 agacccgagt tggtggactg aatttagcag aaaggaggat gtaaagaagg gaaataacat 900 atattgtgaa accactcatt tcagacacag cacaatactt tacataaatt ctctctcact 960 ccttctaaca tcctgtgtgt agatatcatg attttctttt acacaattat acttgtgata 1020 tggatattct gttacatacc tgccctagct ggtgactgcc acagcttaat tggaatctag 1080 tttatcaaat tcaaaagctt gtgctctttc catgaataaa tgtttctttc taggactcgg 1140 aggtgtaggt cctttctaac ataaaagtga gtgaacctca catggcattc ggaagggtaa 1200 atccaggcat gggaagggag gtattttacc gagggaccaa gagaatacgc atatcagaac 1260 gaggacaggc ttaatttctg gacccgtctc atcattccct tgaactcaca ggtttatgtg 1320 gataatttta tctctgaggt ttccaggagc tcaatggaaa atgggatttc atgcgagagc 1380 gccctgattc cctctaagtg cagaggtcta tgtaaaatca gcccgactgc ctcttccctc 1440 ggttcacagg ctccggcagg gacagggctt tccgcccttt cctgcctgca ggaaggcgga 1500 ttcccgaagc ccccagagag ggcgggcagg gctgggcaga gccgccgggc ggatcacaag 1560 tctggagcgc caggcacggg cgggcgggaa ctggaggtcg cgcgggcggt tccacagctc 1620 cgggccgggt cagggcggcg gctgcggggg cggccgggct ggggccgggc cggggcctga 1680 ctgaccggcc ggtgattccc cgcagaggat ttcgtgtacc agtttaaggg catgtgctac 1740 ttcaccaacg ggacggagcg cgtgcgtctt gtgaccagat acatctataa ccgagaggag 1800 tacgcacgct tcgacagcga cgtgggggtg tatcgggcgg tgacgccgct ggggccgcct 1860 gccgccgagt actggaacag ccagaaggaa gtcctggaga ggacccgggc ggagttggac 1920 acggtgtgca gacacaacta ccagttggag ctccgcacga ccttgcagcg gcgaggtgag 1980 cgtcgtcgcc cgtctgcgag gcccatcctt ggcaggggcc cagagtctct gcgccaggag 2040 gggcgaaggg ggcgcggcct ctggaacctg agccttgttc gttccacccc ggctgacagg 2100 aggaggcggt gggggtgctg ggggctggtg catcggaggg gcagggacct agggcagagc 2160 agggggacag gcagagttgg tcaagctgcc tagtttcgcc ccatcctccc cgtccgtcgg 2220 cctcgccctc tgctctgcac gttcttgcct cgtgccttat gcgtttgcct cctcgtgcct 2280 tacctttact aagcagttct ctctgccccc aatttccgcc ctcttcccct gcccgcccgc 2340 ccggctagca ctgccgcacc cggcaaggtc cacctacaca gctcatgcag tgggaagctt 2400 cagacttggc ctgatggagt tagggctgcc ccacaactgc gcgcagggca tccagcaatt 2460 acagttgtca aataagatat tttgactttt gacttcaaat tattattcat cgtaattctg 2520 ttttcttaaa tggctctcat tcatggcgga gctctttgag atgagagtgt tttaatcatt 2580 gcatgcctgg tatctgacac attgactggc atgtggtatg agctcaatga tcttctgtta 2640 aattaatgaa taaatgtgct cagctgccaa tccacttagg ctcaagggaa agcagaggat 2700 aaatagagcc ttaaaaatgg acttttatta attattttct gtcattttgc ttaattcttt 2760 aaagtaaact cttattgact tggatcttaa tagagtttgt gaatacaaag tctgaggaaa 2820 aaagtgtttg ctaaaaataa aaacaacact tgaatgatgt ttgtaaggca gttttaattt 2880 cttagaaaag ctgaacaaat ggcacaatgc aaagagcaga agttttggaa taaatagatt 2940 gaagcaatta aattattgga taaaaatagt ttcaggttgc ttttggctta ggttctcccc 3000 tccccccatc actatccact tcaggaataa acattctgaa agtcaatttt acccatttag 3060 tgagcactta tttctagaca gttaccttat caaataccgt ctatgttacg tcatttaatc 3120 tcacagttgc ctgtgcatta gagattagca tcaccacttt atatatccta atattagtac 3180 atgacaaaca ctttaagtaa tcagcccaca agtactcacc aagaccttaa gcctcccaaa 3240 gtacacaata ttctttatgt tcttcactac acatctatag agtcaaaggg acataaagcc 3300 ttgttaaagc cagttttgac tagaagcagc aatgagtctc ttcctgtttg atctccatgt 3360 taatgggaca aaatgatact ttcaaggcat tgaaaattta tgattaatca atccctagtc 3420 tgactccagt gttacctatg cagattcaca aaacttttag tttactttaa actcccttgc 3480 cttcttttga ctcacatcgt agtgccagca agtacttaca tttttgctat tttggttcta 3540 tttccataaa atttatttta tcatcttttc tcataagttt gtgccctcta ttttactccc 3600 agtctgtgta agatgaacaa atcttataag gccacatagc tgactgtgat ttcaggtgga 3660 ctccaggaag gagaaccaaa gaaaagttca agtccaagca gaaaccgtga ttccttccgg 3720 atgatggctc aagagtgcct tttaattggg gtgcaacctg ctgacctcag caaatctcag 3780 ctatatttat atgttcacat tacaggctca ttaacctagg ctgatctctg caaggatctc 3840 agaatatttt ctacagataa catacatgat aatatctgat ttcaggacaa aaaagtaatt 3900 ctcaatagca agggaatgga gtagggtaga cagctagtaa ttaaactcac ttgtatgtta 3960 aaaataaatt aaggaaaaaa agaaaatgag agaacatatt actaaataaa gaaagcatac 4020 attaaatatt tactatagtt tcacactaag agaataaagg aaatgcaata aagtggcctg 4080 aaagataaag gatgagacgt gtaaagagac agggaaagat gtgtcatttt tttactatga 4140 gcagcagtct gagaagataa aggaatcgag ttatgggcaa acatgatgtt tgatcagtgt 4200 tatttgtttt gaaggcctgc ctacttttgt ttcaaatatt acagactttt gaaatcacat 4260 tctttttgtt ttttgctgtc tgttactaga tcgcacattc tgtaaaggca gggaccatgg 4320 tatgttgttt atctttggat tctcagtgat tgtcatattt atatttgttg aatgaatctt 4380 aatccaagac ttggactcca ggtatctttc cactctggtt ccaaggaggg accattccca 4440 atggtagacg tgctgtgtgg tctcacatct cactcctgtc ttttcctgtc tgttactgcc 4500 ctcagtggag cccacagtga ccatctcccc atccaggaca gaggccctca accaccacaa 4560 cctgctggtc tgctcagtga cagatttcta tccagcccag atcaaagtcc ggtggtttcg 4620 gaatgaccag gaggagacaa ctggcgttgt gtccaccccc cttattagga acggtgactg 4680 gaccttccag atcctggtga tgctggaaat gactccccag cgtggagacg tctacacctg 4740 ccacgtggag cactccagcc tccagaaccc catcatcgtg gagtggcgta aggggatatt 4800 gagtttctgt tactatgggc cccacaagac aaagggcaga gctccttctg acccattcct 4860 tcccatctct tatccctgat gtcactactg agctggggat cacaggagac tagagcacct 4920 cttgctccat ggcaagtgca tcagaagaat cctgatctca tcacctttcc agatgctagg 4980 gaaattattc tacgtactgt ttctccagat cccagtcctg atagctcgga gggacttatt 5040 attagggctg gtgactggga tcttagggtt taaggtatgg atgagttcct gaggagtgga 5100 gatctgcttc cccgctctct cacctactca ctataccgaa ggacctattg gctggctttc 5160 ccctccctta ggggtggtct gaatggagga ctaggttcct ttgacacttt cacctcctgc 5220 atctcagact ggacttcagc tcctcagcag ggatgctatg gggtgtaggg acaaacgctg 5280 acactcaggc tctgcttctt aggggctcag tctgaatctg cccagagcaa gatgctgagt 5340 ggcattggag gcttcgtgct ggggctgatc ttcctcgggc tgggccttat tatccatcac 5400 aggagtcaga aaggtgagga accccaaggg aaaaggggaa gatgggctgt gacccagacc 5460 ctctgttcag ggaggtcctg tctctagatg tggctctttc ctcctgaccc tgagaggaag 5520 aaaactgagc tggaggtggg aggagacagg acaagattgg aggaggcatt ggaatctgat 5580 tttactagtt gaaaggtagc cctgtcacac aggtgactga tagagcttat tccaggatat 5640 acttaccatt catcatctca ttggctcctt tccaaaagct tcctccatta agagggtcag 5700 agccttggcc tccttgcctt ctagtgacaa ttttctttgt tttaggggat tttaaattag 5760 ggtacttaag gccttgaaga acatgagtgg taagagaata taactctaat taagtcacat 5820 gtgtcatttt cctttggggt gaaagagtgg ctgtttgtgt aatgagacct ttctctgcat 5880 aacttccttt tgtaagacct caagggcctc caccagcagg tgatatttca gccatgagcc 5940 agtgtggggg ggcacaggtg taagagggaa gagcatgagc tgaatgcacc tgaccacaat 6000 ggtctctgtt catggtatat ttgctgctat gaggatcaag acttagggtc gaagtttgcc 6060 agtttctagg aatctccaga ggttgttccc cagaaccaag ccttaacttt ggtggtatct 6120 tcttgtgaaa tgtgaagcca gaaccacagc ttaaatgtta gacaagagga tgatgcccac 6180 tttgtgccac atgttggtgg ctactgcctg taggcatttt ccagtgactg aaagaggctg 6240 ctagtggtag ggatgaggta tcatccaatt ttctaaaaag attgaaccct tcatattccc 6300 cagaagagta acagctgttc cgccacttcc cacatatctg catcaagctg aagttctgtg 6360 tcctcacgag ctgatttcac ctttgcacag atcttgcggg aggtgacaat aatacattct 6420 ggacctcagc tttctctgtc tgaagctgca gggggcccct gaggggtggg ggagattgca 6480 ggcccaccag cgtaccctgt gctgatcatc cctcttctct cttcttcagg gctcctgcac 6540 tgactcctga gactatttta actgggattg gttatcactt ttctgtaacg cctgcttgtc 6600 cctgcccaga attcccagct gcctgtgtca gcctgtcccc ctgagatcag agtcctacag 6660 tggctgtcac gcagccacca ggtcatctcc tttcatccc 6699 //