Dbfetch
ID OR880495; SV 1; linear; genomic DNA; STD; HUM; 5112 BP. XX AC OR880495; XX DT 13-DEC-2023 (Rel. 144, Created) DT 14-DEC-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate N-23-16818-B-02-00 MHC class II antigen (HLA-DPA1) DE gene, HLA-DPA1*01NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5112 RA Velickovic M.; RT ; RL Submitted (29-NOV-2023) to the INSDC. RL New South Wales Transplantation and Immunogenetics Services Pathology and RL Clinical Governance, Australian Red Cross Lifeblood, 17 O'Riordan Street RL Alexandria NSW 2015, Sydney, NSW 2060, Australia XX DR MD5; 6be62a5ef54a943942a6099ca12cdb1d. XX CC ##Assembly-Data-START## CC Assembly Method :: TSV v. 3.0.0.27232; created on 1/02/2023 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5112 FT /organism="Homo sapiens" FT /isolate="N-23-16818-B-02-00" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..5112 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT mRNA join(1..171,3756..4001,4342..4623,4838..5112) FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /product="MHC class II antigen" FT exon 1..171 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /number=1 FT 5'UTR 1..71 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT CDS join(72..171,3756..4001,4342..4623,4838..4992) FT /codon_start=1 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /product="MHC class II antigen" FT /protein_id="WPS91270.1" FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ FT THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL FT IQRSNHTQATNDPPEVTVFPKEPVDLGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV FT AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL" FT intron 172..3755 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /number=1 FT exon 3756..4001 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /number=2 FT intron 4002..4341 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /number=2 FT exon 4342..4623 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /number=3 FT intron 4624..4837 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /number=3 FT exon 4838..5112 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" FT /number=4 FT 3'UTR 4993..5112 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01NEW" XX SQ Sequence 5112 BP; 1327 A; 1222 C; 1003 G; 1560 T; 0 other; ctgcctccac tcggcctcag ttcctcatca ctgttcctgt gctcacagtc atcaattata 60 gaccccacaa catgcgccct gaagacagaa tgttccatat cagagctgtg atcttgagag 120 ccctctcctt ggctttcctg ctgagtctcc gaggagctgg ggccatcaag ggtgagtgct 180 caggaggacg caggagcgtc ggggtgagtg atggggtggt tcacatcaat tgctgcttca 240 gggatcacag attttagggg ctcattgatc tatctggtcc tcatagtcta tgttccctct 300 ggccctcata ataataacag caataacagc cagaatttat gagactcctg catagtttct 360 ttccccattt acatctcaca ggaatcttca atgaagataa tattccattc atttagaaat 420 tattcctttt atttagaaat tattttgaaa aaactgaagc tcaaaaagat gaataagttt 480 tccaaggtta cacagcagat caacgagcca agtttgaagt ccagacccag ctctgagggt 540 catacactgc cttccccaga ttcctgcaca cagtgaccta ctatcagggc cctcctatct 600 ctctgggatc cccagcctct atcttttgtg gctgctttac aggaactccg agctatggac 660 tctgcattag gagacgaagt gcaaagagtg tttctgtatc ctccctctct tctaggaccc 720 tagggctctt cctgggtctt tgtgggtggt cacaagcttt cctctctcaa gacagcaggg 780 ttgcatggtc ttgatagcct tgtgattcgg gttctgagag attcaggact gcaagggagg 840 cctagacttt tgatagctgc aaggactcag ccagagatgg accgtagtga atgctccttt 900 ttcctgtagc tgaaatcagg gagaatgaca tcaagcctgt gcatgatgct gtcattccaa 960 aatctagtga tggggaaggt tagaatccat aacgtacaag atgcacactg gcttcagaca 1020 gttttattta agatgtgtag aataaagagg aggtcaggct gggtagaacc agaagtatct 1080 attgccctgt tcgcggtcac ctgagttatt tctaatgtta tgttataata aacaccacaa 1140 taggcttctc ttcatagatg caaatacttt ttagtattct tggtagaaat tcctaatgag 1200 ctcagctgtc tcttcagggc ttccctgccc agtctcttaa catttaaaca tgtcatttac 1260 cttaaaaaca taagtgcaaa ccaactgata aaaaacaacc ttgccttcag tctgcatcct 1320 gtcccagaga cactttcttt gtgtcctcac acgtggagct aagcttctga cttgtctctg 1380 gtacatccct gaggatcctc tcatcttggc catcaggaac ctctacagaa ggtcaaattc 1440 agtgggttct tctcagtgcc tctgacttga gttactaata acatttgcac tataatccac 1500 ttctttctga tgaactaccc tgtccttatt tttctcctgt ttacctggat cctccttatc 1560 atcttttaaa ccacctctta actatcatgt tctctcatta taccctgaga tctcagcaat 1620 tctgattttt ggcactcttc ctggaaaatc ttatttaacc tgcacctgcc actaatgact 1680 ctcagttcta tggcctaaat tcctctcctg agaccaccca taatccacaa atatctatgt 1740 attatttctc cttagatgac tttcaggtct tctaagtgca atagccccac agtaaactca 1800 gtatcttctc ccggtcaggc tgtcttccct gagagaagtg gcttttgccc tgttttctga 1860 atgcctacat tgaagccatc tgttccccag gaagccttcc ctgatgtgct gtttggtcgc 1920 atcttgtgta tacctacgta tctgcactta tccttctgaa cctgctgttg tcctgtcact 1980 tgtgtttcct tctgtgactt atacgcgtct gcagaacagg acgtatgtat tatttttatt 2040 tgggtattta gcatctaaca gtgtttgaca tatagtagtc ttttaataca tatttttgtc 2100 tgaatggaaa tgatattttg aagaaaaata atctgttcca tagctggctg atctttggac 2160 tgcagaactt gtgaaagtgt tttttaaaaa gcattttaaa aagtacaagg gacattcatg 2220 tattaagaag atgagtttcc aataactgct agaggacttt gtgtcttttt attttaccct 2280 ctttttcctg atgagtcctt tgagtccttt aaactgagga gcaagctaag tttcctagtg 2340 aaatacctat aggatttgtt ttgtttagtt tcaaatacca ctctttgctt ggccacttac 2400 tgtgtcaggg agtcattctc agtgaaaaat aagacacagg tcataccctc tagacactta 2460 caattacagt ggcaaggagt cattctcctg tcactgtaag tggccaagca cagactgggt 2520 ccccacatgt cagggctgaa aactcacagg gaaatctgtg agttgggagg tgagagcaga 2580 agagtcccgt agttccttct cactctgatg catttatcat tctaaaccca gactttcaca 2640 tacacattca tcgttttctt tcatgataat agttgctttt atcctcttat ctttgctaat 2700 tcttacaaac taataaagac taagaaacaa aataaattaa atcctacagg tgttccaaac 2760 tcagcaataa tttctagttg gcctctaaaa caaaaatcaa aatataaatg taagaaaagt 2820 ttagaatgct tagtacctgt gtgatgaaat aatctgtaca ctaaaccccc aagtcatgag 2880 tttacctata caacaaacct gcacatgtac tcctgaacat aaaataaatg ttgaaatatt 2940 tttaaaaagg aaacaaaagt ttggaacaaa tgccaaaata actgtactgt acttttgaat 3000 ttatatgccc caaatgaaaa atattatcaa caaagctata cattctacag tttcatgttc 3060 ataaactaag acagaaactt taaaactgtc aagagcccta aaatttgaag gatattttct 3120 tcttcctctc aattttgtat ttttttctac cttttctata ataagaaaaa gaaaatgtcc 3180 attcccccac ccccatgact ctaaaaacaa ttttacatct gtgtcataga aaaattaaga 3240 tcttaatggg agagaaaacc tctctactag ttccgccagt agccgtatga ccttagcaag 3300 ttattaatat gtaacttccc tgcatttcct tacctgtaaa atgtatgata tgtatttgct 3360 tcatagggtt attgtgacaa ttcagcgagt gaaatatgta aagtatttag aaggatgcct 3420 ggcacaagta agtgctcaac aaatgttagc tgtcattgtt actattacta ttgtgtaggg 3480 tcaggatgcc cagactttca aagaccagga agcagcttga cttatcagtg ataaactttt 3540 cattttgttc tttgctcctt tctttttata actgctcatc tgctctgtat tatttccttt 3600 atggtgttgc tccttcttct tccccatatg tccttccttt gacctcttac cttcttcctt 3660 tttatattca taagtcttta ttcattctct agctttgacc acttgcatat tcaaactgac 3720 attttgtcgt gtttttctct actgtcttta tgcagcggac catgtgtcaa cttatgccgc 3780 gtttgtacag acgcatagac caacagggga gtttatgttt gaatttgatg aagatgagat 3840 gttctatgtg gatctggaca agaaggagac cgtctggcat ctggaggagt ttggccaagc 3900 cttttccttt gaggctcagg gcgggctggc taacattgct atattgaaca acaacttgaa 3960 taccttgatc cagcgttcca accacactca ggccaccaac ggtacgccct atctttgcct 4020 cttcctctgt agcccaactg gaagggatga gagggcctct ctgccaccct cagactagga 4080 agcctaagtg ccccctgctg tgtgatcctc ttcccctagt ggccatgggc tgatcccact 4140 acagcaaggg cttgcatcct ctcttctcag gagagagaaa ggtgagcaga gtgaggctgg 4200 tcagtggtgt gatacccctc tctgtgattc agagctgcca taaaatctaa ggctgaggta 4260 gaggaccacc ctcccctaag aggtggagcc tttgtgattc atcccagaag aggggcctaa 4320 cctggtgctg tctccttcca gatccccctg aggtgaccgt gtttcccaag gagcctgtgg 4380 atctgggcca gcccaacacc ctcatctgcc acattgacaa gttcttccca ccagtgctca 4440 acgtcacgtg gctgtgcaac ggggagctgg tcactgaggg tgtcgctgag agcctcttcc 4500 tgcccagaac agattacagc ttccacaagt tccattacct gacctttgtg ccctcagcag 4560 aggacttcta tgactgcagg gtggagcact ggggcttgga ccagccgctc ctcaagcact 4620 ggggtatgca actgcttttc tctccataat ctcctggcat cctctattcc aaagacctgg 4680 tgtcctctgc accagctttc cgcactggct gggtctcagt cctctcctcg tcctaacatc 4740 caattaactg gtccataacc ttcaattccc acaaccatcc caggccatca ccaccctcac 4800 tgcacctcct gaccctatct cttcattctt cccccagagg cccaagagcc aatccagatg 4860 cctgagacaa cggagactgt gctctgtgcc ctgggcctgg tgctgggcct agtcggcatc 4920 atcgtgggca ccgtcctcat cataaagtct ctgcgttctg gccatgaccc ccgggcccag 4980 gggaccctgt gaaatactgt aaaggtggga atgtaaagag gaggccctag gatttgtaga 5040 atgtaaggaa gggaggaaaa attcaatctg ataagtgttc attgatcttc taatgggtta 5100 aaagcattca gc 5112 //