Dbfetch
ID OR880476; SV 1; linear; genomic DNA; STD; HUM; 5633 BP. XX AC OR880476; XX DT 13-DEC-2023 (Rel. 144, Created) DT 14-DEC-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate N-23-11753-B-02-00 MHC class II antigen (HLA-DQA1) DE gene, HLA-DQA1*01NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5633 RA Velickovic M.; RT ; RL Submitted (27-NOV-2023) to the INSDC. RL New South Wales Transplantation and Immunogenetics Services Pathology and RL Clinical Governance, Australian Red Cross Lifeblood, 17 O'Riordan Street RL Alexandria NSW 2015, Sydney, NSW 2060, Australia XX DR MD5; 75402a4f22e9714e16cc32f694750c90. XX CC ##Assembly-Data-START## CC Assembly Method :: TSV v. 3.0.0.27232; created on 1/02/2023 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5633 FT /organism="Homo sapiens" FT /isolate="N-23-11753-B-02-00" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..5633 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT mRNA join(1..322,4093..4341,4755..5036,5393..5633) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /product="MHC class II antigen" FT exon 1..322 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /number=1 FT 5'UTR 1..240 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT CDS join(241..322,4093..4341,4755..5036,5393..5547) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /product="MHC class II antigen" FT /protein_id="WPS91251.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQFTHEFDGDEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" FT intron 323..4092 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /number=1 FT exon 4093..4341 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /number=2 FT intron 4342..4754 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /number=2 FT exon 4755..5036 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /number=3 FT intron 5037..5392 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /number=3 FT exon 5393..5633 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" FT /number=4 FT 3'UTR 5548..5633 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01NEW" XX SQ Sequence 5633 BP; 1628 A; 1185 C; 1252 G; 1568 T; 0 other; tcctcaagtc cactctgagt agaggctgca tcacaagggg attgccccgt ctccttccag 60 ggctcttaat acaaactctt caactagtaa ctgagatgtc accatagggg atttttctaa 120 ttggccaaaa cctgacttgg cagggtttgg tttgggtgtc ttcagatttc cttgtcttga 180 ggtcctcaca attactctac agctcagaac accaactgct gaggctgcct tgggaagagg 240 atgatcctaa acaaagctct gctgctgggg gccctcgctc tgaccaccgt gatgagcccc 300 tgtggaggtg aagacattgt gggtgagtgc atgagtgagg gatgttctct ggagctgaaa 360 aacagtaaat tgaaggaaaa gagataaagc gatttgcaga gaaactgtag agatttccta 420 agggcccttt cagtattaag acaattaaaa attatagctg ttcctccttc aggaaaccag 480 agccccaacc tactcttttt gttatctatg ctgttgtgtt cactaaggac gctattctgt 540 ttatattata ttcagtgact acggcctgga ggtctctatg tcgttccatc atgattgcct 600 caaaaattag tgaggtttcc atcagtggat aattttttat tattaaaaat ttatgaagtg 660 tcattctcaa atttccctga acaacttttg aagcttttcg gatgtctccg gtggtagatc 720 ttggggtcat tccatcaatt atgtactcta tagatattta aaatgttgcc cgtttctttc 780 tctcagactt actcacattt ccacatggga actggcacag gtggggagtg ggtaaaggag 840 tccagcaggc tgaatgcctt caacaatcat tttaccacat ggtcctcact tactctcagc 900 tgcctcatat gtgtcacctc acaagtaatc aaataaaatg ggcatgtggc taagctttgt 960 aaatagtgaa aacatgaatg tcaatttttt ttacatattt ctattacaga tatagcttca 1020 catttctttt ctttagcaaa ataagggatc attttatttt aaaattgaga agtagaaaaa 1080 attggtaaaa taaatcattt tattctcaaa ttatcaaccc aaattacctg ttcttcacct 1140 catctaataa agtcctataa aaagaaaagt gggccagaca aggtggctca tgcctgtaat 1200 cccagcactt tgggaggccg aggcaggagg atcatttgag cctgggagct tgagaccagc 1260 ctgggcaaca tagcaagacc tcatctctac aaaaaaagaa aaagaaaaat tagccaggca 1320 tggtggtgtg tgcctgtggt gccagctact cagaaggctg ccgtgggagg accacttgag 1380 tccatgaggc ggaagctgca gtgagccatg atggcaccac tacactccag ccagggcaac 1440 agagagagac gctgtctcaa aaagaaagag gaaagaaagc gaggaaggaa ggaaggaagg 1500 agaaggaagg aaggaaggaa aagaaaagaa aagggaaggg aggaaggaag gaaaaaagaa 1560 agacagaaag aaagaggaag gaaggaagga aggaagcaca gattaattat ttggtctctt 1620 actctcctct gcctttgtcg tccatctctt tccacctctc ttcatgcatc cctttctccc 1680 tcttcccttt caggatccat ctctggctcc ctgctccttt atagagatgg acagtgggtt 1740 tgtaaaacaa aagttgaaaa gtcagatagt taaaagggga agtgaactgg aaggtacttt 1800 aaactttcac aactttatta accgtggctg ctcccattat gattttgttc ggcagtggaa 1860 gtttcacctg cttctccaga gcacttggcg tctttgttcc aaatttcctt tcttcaacct 1920 cacaccagag tgccctggtc aggcttggct cattcattag gcacaatgtg ggcagtgcag 1980 gggaccctcc atactgtaaa gccacatgag aaggttttaa ctcgttttaa aattagaaaa 2040 ataatggaat attagagcct aagaaaatgt tttaactttt aattcagcct agattatatt 2100 gtctttatac caattcagtc ataaaatata attttccata tttttgtgga ggaagaggcc 2160 catacaagca agaatgctcg gggctcacat gtcagaatgc agccttggtc atgactgatc 2220 ctggccttcg tatggttctg ctacctgtgt gcctgcccgt cttccccaaa atctatgtgg 2280 tcctcgaata tagcaactgt cattcaatac acatgtttga gcacacagtg agctaagttt 2340 taaggattca aagatgaaaa gtcatgctgt cttccctgca gagggtgctc agattagtga 2400 tggaaacagt atggggtgca ggaaagcaga aggccattgc tgagcaggtc agtggaccca 2460 gcagaggctg aaacaataca agtgacttgg ttccaggtgg gccagcaggg tgacgtcctc 2520 tagcaaaatt tggcacccaa gacaagtacc agaagaaaag aaagactgca tgtattccac 2580 atatattcat gtttgaacaa ggagtcaaga tttatggcaa ggataaggag gctttgttgg 2640 tgacctgtta agaccaacca gggcagtcat gctggatagg gaagaaggtg agctggaaga 2700 ggaacagaca acttggacag ccagatgttg agacggaggg gttggaggtc ataatgtggt 2760 caaaaacatg ttgatgagag gactcagcta caaagttgtt aacttaagca gaaacctcaa 2820 ggatggattt tagaatttct ccaggaagtc ctaaaagata attccatttc agggagaaaa 2880 acaacagacc actgcaaaga ccagggaaca tgaaaggata atgtagtttg tcttgcttgg 2940 cagatacttt tgaaggatgt tggactgtaa ggctgtcgat atcctcctca gagaacttac 3000 tacagtacat tgtatctgtt cccttaccta cctgactctt ccactattca gtttgttcct 3060 taatagtaga ccatgcctga ttggtgtttt acacatctcc ggctatgtct gacacttgtg 3120 gatgctcaga aagtggggaa ggaaggaaag atacgatggt aaaaggctta cacatgtctt 3180 gacaaaaaag tccagtttgg ctcatttggc tggagtcgta ctgcatggct gccattctgc 3240 tctggcatcc tcagacaagc acactgccca ttagaggaaa aagtgtgata taagtgttga 3300 gtcagaatgc tgtagacatt tagtaatctc cttcacagga aaaaaaaaaa aaaggtgggg 3360 ggaatgacag aaatccaaaa actagtagag cttccacttt tcatttcaga agaaatcagt 3420 tgctctcctc taaggaccat tactattaac aaaacagaga ccttagaagg aggcattgtt 3480 tatttattat atattttgta atgttattac caatcttgtt atactctttc ttatacccta 3540 caattgttag cagaaattat tttaaattaa taagatcctg catgcttttc ctttaaaaaa 3600 aaaaaaaaag aaagatctct gtgtagagtg tcctattctg agccagtcct gagaggaaag 3660 gaagtataat caatttgtta ttaaccaatg aaagaattaa gtgaaagata aatctcagga 3720 agcagaggga agtaaaccta atttctgact aagaaagcta aatactatga taactcattc 3780 attccttctt ttgttcaatt acattattta atcataagtc catgacatgc caggcactca 3840 ggaaatagta aaaattggac atgcgatatt ctgcccttgt gtagcgcaca ctagagtggg 3900 aaagaaagtg cacttttaac tggacaacta ccaacatgat gaggggagga aacaggggct 3960 ggaaatgtcc acggactgtg ccgaaaaatg aagcccataa tatttgaaag tcagtttctt 4020 ccatcatttt gtgtattaag gttctttctt cccctgttct ccgccttcct gcttgtcatc 4080 ttcactcatc agctgaccat gttgcctctt gtggtgtaaa cttgtaccag ttttacggtc 4140 cctctggcca gttcacccat gaatttgatg gagatgagca gttctacgtg gacctggaga 4200 agaaggagac tgcctggcgg tggcctgagt tcagcaaatt tggaggtttt gacccgcagg 4260 gtgcactgag aaacatggct gtggcaaaac acaacttgaa catcatgatt aaacgctaca 4320 actctaccgc tgctaccaat ggtatgcgtc caccattctg cctctcttta cttaagctat 4380 cccttcatac cagggttcat tattttcttc ccaagaggtc cccagatctt cttatggcaa 4440 ttgctgaaat tttatcatct cccatctcta aaatcacata ttcccatgta atacaagggt 4500 ctttccatta tgcattcagc aaatccttct aggagaggtc tcatcaacct cctactttat 4560 taaacatgcc cacagagaga agggcacagg aataaagcag aggcaatgtg tcattgctcc 4620 caagcagaag gtaaataaga cctctttgac tatcaggtgg tgaaatgctg gtaggagggc 4680 tcttccagga tgtaatgcag aacttcaggg cagagctatt cacacttcac accagtgctg 4740 tttcctcacc acagaggttc ctgaggtcac agtgttttcc aagtctcccg tgacactggg 4800 tcagcccaac accctcatct gtcttgtgga caacatcttt cctcctgtgg tcaacatcac 4860 atggctgagc aatgggcact cagtcacaga aggtgtttct gagaccagct tcctctccaa 4920 gagtgatcat tccttcttca agatcagtta cctcaccttc ctcccttctg ctgatgagat 4980 ttatgactgc aaggtggagc actggggcct ggaccagcct cttctgaaac actggggtaa 5040 ggatgagttt catcattttt tgattctttc ttgtctgtca ggttcagaac ttcctgcctt 5100 ttactcctat atccaaaaac ttgttttcca cacttcatgg gtttcttttc tgtctcactt 5160 ttttttttga aagaataaag caaaaaaagc agagatttat tgaaaatgaa agtacactct 5220 acaggatggg agtgggcctg ccacttcatg gttttctaat gatagacttc actctcctcc 5280 ctaagctggg ggccttgagt ctttgtagag ccaaccctgt accccatccc atcccacaca 5340 catgcacatg agcaaactct gcattctgac ctcaacaact tcacttccac agagcctgag 5400 attccagccc ctatgtcaga gctcacagag actgtggtct gtgccctggg gttgtctgtg 5460 ggcctcgtgg gcattgtggt gggcactgtc ttcatcatcc aaggcctgcg ttcagttggt 5520 gcttccagac accaagggcc cttgtgaatc ccatcctgga agggaaggta agattgagac 5580 tggttacagt tgaagcggca gtatgaaagg aaggaaagtg ggagggcgtt gtg 5633 //