Dbfetch
ID OR640937; SV 1; linear; genomic DNA; STD; HUM; 8698 BP. XX AC OR640937; XX DT 30-OCT-2023 (Rel. 144, Created) DT 31-OCT-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate DE-SMS_A-600925 ABC Transporter TAP1 protein (TAP1) DE gene, TAP1*01:01:01:05 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-8698 RA Nowak I., Busch Y., Schweizer A., Seger S., Hein J.-M., Shealy G., Hey L., RA Schaefer M., Peter W.; RT "Full length sequencing of novel TAP1 alleles"; RL Unpublished. XX RN [2] RP 1-8698 RA Nowak I., Busch Y., Schweizer A., Seger S., Hein J.-M., Shealy G., Hey L., RA Schaefer M., Peter W.; RT ; RL Submitted (04-OCT-2023) to the INSDC. RL HLA-Laboratory, Stefan-Morsch-Foundation, Dambacher Weg 3-5, Birkenfeld RL 55765, Germany XX DR MD5; 72c33dc29366996bbac29d17c67531a5. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. v2.30 CC Sequencing Technology :: Illumina; Oxford Nanopore Technologies CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..8698 FT /organism="Homo sapiens" FT /isolate="DE-SMS_A-600925" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>8698 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT mRNA join(<1..827,1364..1478,1627..1757,2717..2922,3349..3546, FT 4748..4876,5026..5214,5774..5947,6191..6353,6662..6798, FT 8081..>8698) FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /product="ABC Transporter TAP1 protein" FT exon <1..827 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=1 FT 5'UTR <1..229 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT CDS join(230..827,1364..1478,1627..1757,2717..2922,3349..3546, FT 4748..4876,5026..5214,5774..5947,6191..6353,6662..6798, FT 8081..8287) FT /codon_start=1 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /product="ABC Transporter TAP1 protein" FT /protein_id="WOK22514.1" FT /translation="MASSRCPAPRGCRCLPGASLAWLGTVLLLLADWVLLRTALPRIFS FT LLVPTALPLLRVWAVGLSRWAVLWLGACGVLRATVGSKSENAGAQGWLAALKPLAAALG FT LALPGLALFRELISWGAPGSADSTRLLHWGSHPTAFVVSYAAALPAAALWHKLGSLWVP FT GGQGGSGNPVRRLLGCLGSETRRLSLFLVLVVLSSLGEMAIPFFTGRLTDWILQDGSAD FT TFTRNLTLMSILTIASAVLEFVGDGIYNNTMGHVHSHLQGEVFGAVLRQETEFFQQNQT FT GNIMSRVTEDTSTLSDSLSENLSLFLWYLVRGLCLLGIMLWGSVSLTMVTLITLPLLFL FT LPKKVGKWYQLLEVQVRESLAKSSQVAIEALSAMPTVRSFANEEGEAQKFREKLQEIKT FT LNQKEAVAYAVNSWTTSISGMLLKVGILYIGGQLVTSGAVSSGNLVTFVLYQMQFTQAV FT EVLLSIYPRVQKAVGSSEKIFEYLDRTPRCPPSGLLTPLHLEGLVQFQDVSFAYPNRPD FT VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY FT LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE FT VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR FT SVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQAPADAPE" FT intron 828..1363 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=1 FT exon 1364..1478 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=2 FT intron 1479..1626 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=2 FT exon 1627..1757 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=3 FT intron 1758..2716 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=3 FT exon 2717..2922 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=4 FT intron 2923..3348 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=4 FT exon 3349..3546 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=5 FT intron 3547..4747 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=5 FT exon 4748..4876 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=6 FT intron 4877..5025 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=6 FT exon 5026..5214 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=7 FT intron 5215..5773 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=7 FT exon 5774..5947 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=8 FT intron 5948..6190 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=8 FT exon 6191..6353 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=9 FT intron 6354..6661 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=9 FT exon 6662..6798 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=10 FT intron 6799..8080 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=10 FT exon 8081..>8698 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" FT /number=11 FT 3'UTR 8288..>8698 FT /gene="TAP1" FT /allele="TAP1*01:01:01:05" XX SQ Sequence 8698 BP; 1873 A; 2313 C; 2076 G; 2436 T; 0 other; ggcgttatct agtgagcagg cggccgcttt cgatttcgct ttcccctaaa tggctgagct 60 tctcgccagc gcaggatcag cctgttcctg ggactttccg agagccccgc cctcgttccc 120 tcccccagcc gccagtaggg gaggactcgg cggtacccgg agcttcaggc cccaccgggg 180 cgcggagagt cccaggcccg gccgggaccg ggacggcgtc cgagtgccaa tggctagctc 240 taggtgtccc gctccccgcg ggtgccgctg cctccccgga gcttctctcg catggctggg 300 gacagtactg ctacttctcg ccgactgggt gctgctccgg accgcgctgc cccgcatatt 360 ctccctgctg gtgcccaccg cgctgccact gctccgggtc tgggcggtgg gcctgagccg 420 ctgggccgtg ctctggctgg gggcctgcgg ggtcctcagg gcaacggttg gctccaagag 480 cgaaaacgca ggtgcccagg gctggctggc tgctttgaag ccattagctg cggcactggg 540 cttggccctg ccgggacttg ccttgttccg agagctgatc tcatggggag cccccgggtc 600 cgcggatagc accaggctac tgcactgggg aagtcaccct accgccttcg ttgtcagtta 660 tgcagcggca ctgcccgcag cagccctgtg gcacaaactc gggagcctct gggtgcccgg 720 cggtcagggc ggctctggaa accctgtgcg tcggcttcta ggctgcctgg gctcggagac 780 gcgccgcctc tcgctgttcc tggtcctggt ggtcctctcc tctcttggta aggggaacgc 840 agggcaagag gggaggacac aaggggactg ggacaggaat caaaggtaat tgtcagtaag 900 gtagagtagc gtgggttctg ggaaatgtgg agcaggagaa ggactcctag cgtgggtctt 960 ggaacaccac ttcggtgtag aagaaacggc actggactgg cgggggccag aggttctggg 1020 ctccattgct gaccgggtct tgattctttg ggccacgccg gaagcgggga aatcctttgc 1080 tctggggccg aagggcgggg catcctcatc tctaacagga ggcttttcta cttcatgatc 1140 tccagccttc ctaataaaat cctgaaagtt ctggtagagc aaccacaggg tagtgagttc 1200 cagggcagcc tatttaggtt cgggattgag acgtcagtgt ttcctttctg ctgatgccct 1260 ccaggataat ggtgaggggg aggaggcgtg gtggggccag tctgactgga actgacctac 1320 ttagacttaa tatttgtgcg tgacctctct tctctttctc caggggagat ggccattcca 1380 ttctttacgg gccgcctcac tgactggatt ctacaagatg gctcagccga taccttcact 1440 cgaaacttaa ctctcatgtc cattctcacc atagccaggt ctgggggctg aaaatggggc 1500 accctgcaaa tgagggagtt ggaagttggg gctgctgtcc gaaatgcact tatatgggga 1560 tacctgggac cttcagtctg ttccctgaac acaccctgat cccctttttt tccgggttct 1620 ttatagtgca gtgctggagt tcgtgggtga cgggatctat aacaacacca tgggccacgt 1680 gcacagccac ttgcagggag aggtgtttgg ggctgtcctg cgccaggaga cggagttttt 1740 ccaacagaac cagacaggtt tctcctgaaa ctctttcatt atacgccatg tactgttcat 1800 atcctcatac atctgctttg atctcccccc tccccgctct ctctctctca cacacacata 1860 cacacattgt tccttctcat tcttgatata ccctctccct gtctctctct ctctgtctct 1920 gtctctctct ctctctctct cacacacaca cacacacaat tgtttttctc attcttgata 1980 tacctcagga gcaaaatatt gtcctcctta ccttaagaaa aacctagagt tttcatctag 2040 cattttctta taaatctatt cctatgtatc cttagataga aaccatagaa tttcaaacct 2100 ggaaattttg agctcataga gaccaactgc ctcatctgac agagaaggaa actgaggcca 2160 agaccctaaa tgctgaaact gcacagttac atatggctag agacacactt ggggttagaa 2220 ccctggtctc ttgagtgctc cacagacttc ggcatgcttt ctagcagcac tagaagctgt 2280 acagttacat atggctagag atagacctgg ggttagaacc ctagtcccag tgagtgctcc 2340 acagactttg gcatgcttcc tagcagcacc ctcctcctcc atctctgtta tgtgaccagt 2400 ttaagctctt cctgcctgtg tgtatagcat gggacataca ggttctctag ggaacagaaa 2460 gctttcagga aaatggaaat tcacatgtgc attaatgact ttataattaa aatgaaggtc 2520 aggcctttcc tctttaacac tcatcttccc tgcactgaga tttgcagacc tctggagaac 2580 cctaaccttg tttcctgcag cctccttaga accccatgtt gacacccctg accctggcat 2640 cctggctcat tgttagttcg tctcatcact tggaacctgt ctgattcacc tcactctctt 2700 ctccccaacc ctgcaggtaa catcatgtct cgggtaacag aggacacgtc caccctgagt 2760 gattctctga gtgagaatct gagcttattt ctgtggtacc tggtgcgagg cctatgtctc 2820 ttggggatca tgctctgggg atcagtgtcc ctcaccatgg tcaccctgat caccctgcct 2880 ctgcttttcc ttctgcccaa gaaggtggga aaatggtacc aggtatgttc atggagttgg 2940 cccgctctac acagaccctc atctcccaga cttggcagac tcagttcctc tcacattgct 3000 ttcagtccag ctttcctggc acccttactg attctccatc ttcatggaac accctgtccc 3060 tgtggtccat gttcccaggt tgctcaacat taacctccat actctctggg tcttcttttc 3120 tagcttctcc ccacaatctg tctttaagaa tttgatcccc aacccgttct gagtcatttt 3180 cctcttcctc gtatttcttt agcatccaag gggcatagct gtgtctcttt ctcttttctc 3240 cttttcctct gtctcttctc acctttaatt tccaaatagg taactcaggt attagtgtcc 3300 ctgatggttt gccaacccgt gtgacatctc ttgtccatgt atccacagtt gctggaagtg 3360 caggtgcggg aatctctggc aaagtccagc caggtggcca ttgaggctct gtcggccatg 3420 cctacagttc gaagctttgc caacgaggag ggcgaagccc agaagtttag ggaaaagctg 3480 caagaaataa agacactcaa ccagaaggag gctgtggcct atgcagtcaa ctcctggacc 3540 actagtgtga gcacctgaag atgaataccc attcccttgt ccttaagatg ccgtgactcc 3600 attcccattc ctatgaccct gctcccactc ctcctttact gggaaatggt tggttcagta 3660 ttttcgtcct agcaacctga ggctcaatga ctctactcag tgtccctagc cccctccctc 3720 tctttaaaga tgctaggtgg cttcctttca gtatggtaca taaaatccac ccaaccatgt 3780 ggattggaga gatgcgtgtc ttccagtcct agggccttcc tttgcctctc aggggaagtg 3840 cagggcgcca taaattcttg cacctgggac tgcttcatgc tggtaccttg tagatttgtt 3900 agtgagagtg atgggaatag tggaagccag ggatgaggga catctgtgat gcactggaaa 3960 gagagctacg ccagtgatcc gaagatcctg gcttgatgat gcaatttact tgtcttgtga 4020 tcatgacaac aaatttacct tctctgagac tgtttcctct ttatttattt atttgtttgt 4080 ttgtttgttt atttttactt attattatta tttttgagct ggagtctcgc tttgtcgccc 4140 aggctggagt gcagtggcgc gatctgggct cactgcaagc tccgcctccc gggttcacgc 4200 cgttctcccg cctcagcctc ctgagtagct gggactacag gcacccgcca ccacgcccgg 4260 ctaatttttt tttttttttt gtatttttag tagagacgag gtttctccgt gttagccagg 4320 atggtctcaa tctcctgacc ttgtgatccg cccacttcgg cctcccaaag tgctggaatt 4380 gcaggcatga gccactgcgc ccgactggtt gtttcctcat ttttcaaaaa tggagtgata 4440 taaccttctt tataaggctc ttcatgtatt agctgacatc acatgaatga aagccttttg 4500 tgaagagtaa aatgctcccc agacaaggtg atagtggtga tggtggtgaa gataactgtg 4560 acttgcatga tgtgcattga gtcagactcc atggggtctc tggttcattc tcctgtctgc 4620 ctattgagcc tgccgatgtc acttaggaga cagggacttg atatttcctt caggttaatg 4680 actgcggttc tttgtgtccc ctccagattt ctctacctca gtcccttttt ttgtggtctc 4740 tttatagatt tcaggtatgc tgctgaaagt gggaatcctc tacattggtg ggcagctggt 4800 gaccagtggg gctgtaagca gtgggaacct tgtcacattt gttctctacc agatgcagtt 4860 cacccaggct gtggaggtga ggtccctcca ccttcactcc ccagtgtgat tccttcctct 4920 ggcccagcac catctgtgtg atgtccttcc attctttacc cttcttgctt cacataatgc 4980 tggcaagcag actacctcac tttcactatt cttacctccc tctaggtact gctctccatc 5040 taccccagag tacagaaggc tgtgggctcc tcagagaaaa tatttgagta cctggaccgc 5100 acccctcgct gcccacccag tggtctgttg actcccttac acttggaggg ccttgtccag 5160 ttccaagatg tctcctttgc ctacccaaac cgcccagatg tcttagtgct acaggtacaa 5220 cctaccactc cctgtattcc actggcccca actgcaattc tgccatccta aattttcttc 5280 ctgccttcag cctgcttact gccaagcata tatcctccct aaccctttaa aggcaatggt 5340 aggcatcatc tgttccataa atcttcccca aactcaagaa cccagtttgg gcttccaaag 5400 agaatgagag aagaggtttc gaagagagtg ctctcacgtt ccaaggaatt gctgcagcaa 5460 aatctgtgtc ttcggtcttc catctttcct tttcctttgt aatttggaat gtgatttttc 5520 cctttcctgg tggtatctga catcaagtgt gtggcatagt ggtgctgggt ctctgccctt 5580 gtctttgccg cttcttctat ctctactcct tggggaggca tcacccagaa atctgtgcat 5640 gtgggagggt aggagtttct atatttccct gtttttcttc tggggtaaga catcatgcta 5700 tgtaacaagg caatgacact ctcaaggtta gaggccttgg tagcctctta tcgtgtgctt 5760 ctctggcctc taggggctga cattcaccct acgccctggc gaggtgacgg cgctggtggg 5820 acccaatggg tctgggaaga gcacagtggc tgccctgctg cagaatctgt accagcccac 5880 cgggggacag ctgctgttgg atgggaagcc ccttccccaa tatgagcacc gctacctgca 5940 caggcaggta tggaagcagg tggcttgaag gagggcaggg agcatcaaat acgaagagca 6000 ttcttactga gcactctgaa agaggggtta gggaatgata agagaccttg ggtggagatg 6060 gtggtgtagt caggagggag gtagtatgat tttgtgacat gttctcaata aagattttga 6120 gtcttcgatc tctagataac catactccca tgtgccttgt tctatgactc ttcatcatat 6180 ttcatctcag gtggctgcag tgggacaaga gccacaggta tttggaagaa gtcttcaaga 6240 aaatattgcc tatggcctga cccagaagcc aactatggag gaaatcacag ctgctgcagt 6300 aaagtctggg gcccatagtt tcatctctgg actccctcag ggctatgaca caggtactct 6360 ctccactcat ctcaccaccc agccatcttt acctttgctg aaaccccagt agtcttgcct 6420 ttatccttca gttcctcctt actcatggac atcaatttga agttgtaaga tcatgctcct 6480 atggcttctt catcctgaca tcctcaggat tctgttcatc ttcccagaat ctcccctatc 6540 cagctacaac cgtcagatct tggtgtgtgt gagtgcgtga atgcatgagt gtgtctgtgt 6600 gcatgtacat gcgtgcacac atgtggctat accgttctca tcttggccct ttgctctgca 6660 gaggtagacg aggctgggag ccagctgtca gggggtcagc gacaggcagt ggcgttggcc 6720 cgagcattga tccggaaacc gtgtgtactt atcctggatg atgccaccag tgccctggat 6780 gcaaacagcc agttacaggt gaggcagtca tcttcttaat ggctatatcc cacccaatct 6840 tgcttctttt atacatcttc tgttagtttt actaacatca taattataca aaccagtcct 6900 tgcagttctc agttcccaaa tccagttcca ttggatgcct ccccaaggag tagagataga 6960 agacgaggca aagacaccta gaatcagtta aaagagacta tctacaaact acagactgaa 7020 tttctttctt tctttccttt ttttttttta agacagtgtc tcactcagtt gcccaggctg 7080 gagcgcagtg gcacaatctt ggctcactgc agcttcaacc tgctgggctc aagcgattct 7140 cccctcagcc tcccgagtag ctgggactac aggtgtacac cactatgcct ggttgacttt 7200 tatattttta gtagagatgg gtttcaccat gttgcccagg ctggccttga attcctgagc 7260 tcaggtaatc tgcccccctc agcctcccaa agggctgggg ttataggtgt gagccactgc 7320 gcccagtcct atagactgaa tttctaaagc gaaacataag gaaaagacca tcctcataat 7380 atcgtttatt taaaaaaatt attttttgta cagacagcgt cccgctatgt tgcccaggct 7440 ggccttgaac tcctgggccc aagtgatcct ccctccttga cctcccaaag tgctaggatt 7500 ataggcatga gccaccgggc ccagcccatc ctaatcatat taatattaat taagctagtc 7560 tgtttacatg cactgtcact catttattca ttaggaatcc ttctgagcta ggcatttatc 7620 atcattctac agatgacaaa atggaggtta aaagaggttg aataagctgc tcatatagag 7680 gtcatatagc ttttgagtgg cgcagccttg acccaaattc aggtctgcct gacttgaatg 7740 ctcatctctt tactactaag ttatatttcc ttaaaatcga atataaaaat gccaagtcca 7800 tgggtagaga agaggactat tcaatagtct ttattcttct gtcacgtgtt tcaccctagg 7860 gttctcattt ttatcctact tttgcaccct tcatgtaaaa cagtccttaa tgaaacaaag 7920 ggtttgcgga gaagtactca gaatgggaaa cgttggtgtc cttggggttg ttagcagagc 7980 cagcagtgat cctgtgaggt cagtcccagc cctggaaaca caggtgtctc cctgggctga 8040 gggtagtccc cggctctgac ggtccgatgt ctttcctcag gtggagcagc tcctgtacga 8100 aagccctgag cggtactccc gctcagtgct tctcatcacc cagcacctca gcctggtgga 8160 gcaggctgac cacatcctct ttctggaagg aggcgctatc cgggaggggg gaacccacca 8220 gcagctcatg gagaaaaagg ggtgctactg ggccatggtg caggctcctg cagatgctcc 8280 agaatgaaag ccttctcaga cctgcgcact ccatctccct cccttttctt ctctctgtgg 8340 tggagaacca cagctgcaga gtaggcagct gcctccagga tgagttactt gaaatttgcc 8400 ttgagtgtgt tacctccttt ccaagctcct cgtgataatg cagacttcct ggagtacaaa 8460 cacaggattt gtaattcctt actgtaacgg agtttagagc cagggctgat gctttggtgt 8520 ggccagcact ctgaaactga gaaatgttca gaatgtacgg aaagatgatc agctattttc 8580 aacataactg aaggcatatg ctggcccata aacaccctgt aggttcttga tatttataat 8640 aaaattggtg ttttgtactg tggtttctta tgtttccggc acaccaaacg gcccactg 8698 //