Dbfetch
ID OR573867; SV 1; linear; genomic DNA; STD; HUM; 5827 BP. XX AC OR573867; XX DT 27-OCT-2023 (Rel. 144, Created) DT 28-OCT-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (DPB1) gene, DPB1*04:02:01:02v2var DE allele, exons 2 through 5 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5827 RA Silva J.S., Goldenstein M.L., Vinhal F.A.; RT ; RL Submitted (18-SEP-2023) to the INSDC. RL HLAGyn, HLAGyn, 2a AV QD 1B L 53/54 Condominio Cidade Empresarial, RL Aparecida de Goiania, Goainia 74935900, Brazil XX DR MD5; da59a21784c29a27fa208a3c0ea96801. XX CC ##Assembly-Data-START## CC Assembly Method :: TypeStrean Visual and NGS Engine v. CC TypeStrean Visual 3.0 and NGS Engine 2.30 CC Assembly Name :: Default, Classical CC Coverage :: 500x CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5827 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>5827 FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" FT mRNA join(<169..432,4431..4712,5260..5370,5700..>5827) FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" FT /product="MHC class II antigen" FT CDS join(<169..432,4431..4712,5260..5370,5700..5719) FT /codon_start=3 FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" FT /product="MHC class II antigen" FT /note="DP beta chain" FT /protein_id="WOF01012.1" FT /translation="NYLFQGRQECYAFNGTQRFLERYIYNREEFVRFDSDVWEFRAVTE FT LGRPDEEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQH FT HNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDV FT YTCQVEHTSMDSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRG FT SA" FT exon 169..432 FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" FT /number=2 FT exon 4431..4712 FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" FT /number=3 FT exon 5260..5370 FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" FT /number=4 FT exon 5700..>5827 FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" FT /number=5 FT 3'UTR 5720..>5827 FT /gene="DPB1" FT /allele="DPB1*04:02:01:02v2var" XX SQ Sequence 5827 BP; 1550 A; 1230 C; 1655 G; 1392 T; 0 other; ctctgcgacc cgcttaggac cacagaactc ggtactagga aaactcctat tttaaaatcc 60 agccctgggt gggaagattt gggaagaatc gttaatattg agagagagag ggagaaagag 120 gattagatga gagtggcgcc tccgctcatg tccgccccct ccccgcagag aattaccttt 180 tccagggacg gcaggaatgc tacgcgttta atgggacaca gcgcttcctg gagagataca 240 tctacaaccg ggaggagttc gtgcgcttcg acagcgacgt gtgggagttc cgggcggtga 300 cggagctggg gcggcctgat gaggagtact ggaacagcca gaaggacatc ctggaggaga 360 agcgggcagt gccggacagg atgtgcagac acaactacga gctgggcggg cccatgaccc 420 tgcagcgccg aggtgagtga gggctttggg ccggcggtcc cagggcagcc ccgcgggccc 480 gtgcccaggg cgcaggagca gccgggttgg cctaagggac cttagtgccg ggcggaaagg 540 ggactttggg ttggggattc atggggggag cccatctgga gcttgtcagg ggagcgagcg 600 cggggacctg gactgggctg agcatggagt gaggaggacg agagcagaga gacccccggg 660 acttcatcag gcctggcagc tgactgcatg tggggtgaaa aaaggaagcc acaggacagc 720 gcacaagggt atggtgtgga gatggaggtg gagatggcac agcaggccac acagagaaga 780 aacctacagg gaggtagctg ggtttgaggt gcttgagggg cagatgggtg gtctgatggg 840 caggtagaca gaagggtctg cagccgggga ggagactgag atacatgaga ccatccaggg 900 agaggggacc cagggggaag agcaaaggac cggatcctgg gaactggaca gttgtgattt 960 ggccaagaca gaaaagcctg tgaaagagac caaaaaaacc caagtgcagt gtgaggagag 1020 gcccgcagag aagagtcttg gaagctgagg ggaggtgacc tcagcagcac agtggacagc 1080 ggtgccagtg acttgggaag gtcagaaaac agaagatgga aagtgggttt ggaaaccagg 1140 gagacctggg gagagcaggt tggccgcagc ggcaggagct ggaatgggag ggggtgcatg 1200 aggctgagtg tggcgcatcc tcctcggggc tgagatggat tttacttgtc ttgggttccc 1260 cacggctgtc acagggcagt gtctcagttc attcgtcttt ttccttcagg aagtctgggt 1320 gtaaagggat ggagagaggt gaggtgtgtg cagtaagagg atttctcaag gatgggacag 1380 gaaggccttg gagctttggc ttcctcctgt gaacttgtgg ggtggggagc ctggtgcacc 1440 aacctgaggg acttgaggga gtagtatcag gatgtgggat tgagccctgg accttttttc 1500 tagaaagagg aaaaaaatga agggaggagg aggaggaagc tggggagatc acacctttga 1560 ttttcttgtt cctggaaagt gaaaggaagt tcacctgcta tgagtgagaa ggtggacaca 1620 ctgggtgggg atgaggtgag tgacatgagc ttaggaaagt tgctgaggta attggttgag 1680 agaggtgttc aaataaaaat aacgcaattg gcaaaaactg ttactaagac tttgtagagg 1740 caccaatcag tgacatggca gcattttctt tcacagtaat caactgccag attgcagaca 1800 gccctgatgc cagcctaagg agtgtgggtt tctcctccag gcccgcaggt ccccaacctc 1860 actcctctga agactcttct ggagatcctc tgtgatgcac agatctccag actcagtgcc 1920 cccagactca gattccctgg gtggggaggt ctggggatct ctgcttgtaa tcagctccct 1980 agaggttccc atgtagccag ataagtattg tcagaacact gaagattttt gaaaaatgaa 2040 aaagagaagg ttggagatgt gtcttcagaa gactactaag ggtgctggct agaggaggga 2100 ccagaggcag ggagatgagg taggaaactg ctattatttg tcagggaaat tgcaatcaag 2160 gcatgagtta gaacagggaa aacacagagg caagggagag gtggaagggg gaggaaagaa 2220 gtagtgacaa ttccagggtg gatgtccacc caaatctaga agtaattgag caaatgtttt 2280 ctgggcatta gagaaggcaa ctagaacaaa caggaatcct tgccttggtg aaatgtattt 2340 gaactgggtc agaaatgagg ccattgggta tcaggcctta actccagcgc accctggagg 2400 tcactgatgt ggctccaggc tgacctgctc ctgtcaaaga atattgagca agatgcctct 2460 cgtggaatgt tctgggacct taaaacagat acccaagtat tccccctgat ttcatggttc 2520 ccagaagctc tatggggaag aaattgtagg taattcacaa ctgagattta gacataagtt 2580 gaatagtgta atggacattg agttaaccga ggtaatgaag tagtgagaca caggtgcccc 2640 tgaaataaac tcacattgag ggaagaggct gacaatgtgg atcagtctga aaacaaggca 2700 aaaatacaat agggagtaag ggttgtgtgt cagttcaaga ctgtactttt acctggccca 2760 gcgccatgtt agggtatttg tgttctccag gaagtagaaa ggaaagaact gagtgattag 2820 ggacctagaa gactaatttg agacattcct cttgatgagc tgttctctag ggtagtcctc 2880 tgaaagagct gttctctagt ggatctccct gaatgaactg ttctctagga gcacttgacc 2940 cttttctgtg tttgtttttt gttttgtgtt tgtgtttgtt tttgagacag gttctcactt 3000 tgtctcccag gctggagtgc tgtggcacca tcatggctca ctgcagcctc aacctcctgg 3060 gctcaagtga tcctcctgcc tcagcctccc atgtagctag aactacagat acacgtacca 3120 ccatgtctgg ctaatttatt tttcttttta gagatgggtt ctcactatgt tgcccaggcc 3180 ggtctcaaaa ccctgggctc aagtgatcct catgcctcaa cctcccaaag tgctaagatt 3240 ataggcatga ccaccatgcc tggccttttc tgctttctga ggaggaaaaa ggtactggtg 3300 gcagagatcc aaaagaaaag ttgccagtgg cagtgtggaa attcacctga gaacaacagg 3360 acaagctggg gcacaaatgc aaagatgcag agggaggcaa cacctggtca tctgtgagac 3420 cttcatggga cctgaagacg cagcacagag gaggaacttg aaaaaggacg ggatttctac 3480 tactcaagca tgtaggagct caggatattc tgtaaatatg aagattttga gtttttgtag 3540 gtgaggtaaa aaaatacata ggttttttac agaataagac atgtaaagct ctcttcattt 3600 tctttgtatt ttcatgaagt tattagattc acaggccacc ataatgccat tgtctgtata 3660 tcttaatttc aagatattat ttgagtaaat tttgcttcct ttgtatcaag atagaacttt 3720 gaaaaggtag gtaatttcac agttgatcaa atattctttg cccaaattac ttttggttaa 3780 aatttctcct aaatgtgcta cagagtgcaa actctgtctc cctgccattc cgctatatac 3840 ttactaacta ttattttatt caagatcatg catgctctac ttgaaggtct atttctatct 3900 tttcaatgct acccttaccc actagcctaa tcacattatt cctattttca acatctagga 3960 atcaattaca tagtgaacat gcctaagaaa taataatctg ggcagatgca gtggctcagg 4020 cccgtaatcc cagccctttg agaggccgag cgggtggatc acttgaggtc aggcgttggt 4080 caagtgctcc tagagaacca ggctgaccaa catggagaaa ccttgtctct actaataata 4140 caaaaattag ccaggtgaag tggcaggcac ctataatccc agctattcgg gaggctgagg 4200 aaggagaatt ggttgaagcc cggaggtgga ggttgcagtg agccaatatt gcgccactgc 4260 attccagact tggcaacaga gtgacactcc atctcaacaa aaagaaagaa tgaaagaaag 4320 aaagagcgag attatgtctc aaaaaaaagg aaggaaggaa ggaaggaagg aaggaaggaa 4380 agaaggacaa tctcaaattc tatttcatta tttttcttcc acgctcctag tccagcctag 4440 ggtgaatgtt tccccctcca agaaggggcc cttgcagcac cacaacctgc ttgtctgcca 4500 cgtgacggat ttctacccag gcagcattca agtccgatgg ttcctgaatg gacaggagga 4560 aacagctggg gtcgtgtcca ccaacctgat ccgtaatgga gactggacct tccagatcct 4620 ggtgatgctg gaaatgaccc cccagcaggg agatgtctac acctgccaag tggagcacac 4680 cagcatggat agtcctgtca ccgtggagtg gagtgagtct ctgatgaccc tctagacccc 4740 acctctgaag agcaggggac tctctggctc tggggtccac tcatcttatc ttctgcatct 4800 ataccctggg gccatgtcca aaccccatct ttcttctata ccagctcctg agcatagttt 4860 gaagccaggg aaatggagac ttcctgacct tggcttaggg gttcctgaag attcatagtt 4920 ctcccccttg tcagagaatc tagggacact gactggtctc gaaaccctca cacttaggaa 4980 ctgacctcac acataggaac agttctcttc cttcagcatt ttagcctctt ctcaggcatt 5040 ttgagaggca acttccagaa tcagcatttg ccaccttgtt gaggtcacac ccctgttcca 5100 gatatgaggg tggctctttc tgaatttcct cttagcaagc tttttccgct gcactgtcct 5160 catcccgata tgctgcatca ggctccagaa tctcagacag gacatgagta gggatgcagc 5220 tggtggaggt gacactaaac ctgggtctgt ccttcccaga ggcacagtct gattctgccc 5280 ggagtaagac attgacggga gctgggggct tcgtgctggg gctcatcatc tgtggagtgg 5340 gcatcttcat gcacaggagg agcaagaaag gtgagaaagc ctgcagggtg agcgggactt 5400 accttcccct ggcatattca cacttattcc acgatgaggg gtttgacaga aaagaaatgt 5460 cagaaagctc tagaggccac tgatatcaga taatcgggga acaaacatga cctatagcga 5520 gagagggatc ccaggctggg atcttaatgc agccagatgc atgaggtccc aagtactcag 5580 gctcctgcgg agcgtccatt gagtgatggg caatggaatt tggtgggatg gaaatgtttc 5640 tctaattatc tgaggtggtt tcaatggctg attatataac ctttcgtctt tcatttcagt 5700 tcaacgagga tctgcataaa caggtaatat tcctgctttg atttccttgt ggggtgggtt 5760 gcaggaggat atgagtcctt tctgtgcatt gtaacactga ggctcctcca ggaagggaat 5820 ctcaggc 5827 //