Dbfetch
ID OR492651; SV 1; linear; genomic DNA; STD; HUM; 6505 BP. XX AC OR492651; XX DT 01-OCT-2023 (Rel. 144, Created) DT 02-OCT-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens clone LFACnew003_QB MHC class II antigen DQ beta chain (DQB1) DE gene, DQB1*06var allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6505 RA Noble J.A.; RT ; RL Submitted (17-AUG-2023) to the INSDC. RL Children's Hospital Oakland Research Institute, 1430 Stannage Ave, RL Berkeley, CA 94702, USA XX DR MD5; 15f423a25ef8b6fdc09c690831aba244. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.30.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6505 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="LFACnew003_QB" FT /db_xref="taxon:9606" FT gene <1..>6505 FT /gene="DQB1" FT /allele="DQB1*06var" FT exon <1..144 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=1 FT 5'UTR <1..35 FT /gene="DQB1" FT /allele="DQB1*06var" FT CDS join(36..144,1576..1845,4395..4676,5186..5296,6394..6407) FT /codon_start=1 FT /gene="DQB1" FT /allele="DQB1*06var" FT /product="MHC class II antigen DQ beta chain" FT /protein_id="WNI41389.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPVAEYWNSQKEVLERTR FT AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCLVTDFYPGQIKVQW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" FT intron 145..1575 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=1 FT exon 1576..1845 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=2 FT intron 1846..4394 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=2 FT exon 4395..4676 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=3 FT intron 4677..5185 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=3 FT exon 5186..5296 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=4 FT intron 5297..5760 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=4 FT exon 5761..5784 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=5 FT intron 5785..6393 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=5 FT exon 6394..>6505 FT /gene="DQB1" FT /allele="DQB1*06var" FT /number=6 FT 3'UTR 6408..>6505 FT /gene="DQB1" FT /allele="DQB1*06var" XX SQ Sequence 6505 BP; 1643 A; 1476 C; 1599 G; 1787 T; 0 other; tgttgactac cactgctttt cccttcgtct cagttatgtc ttggaagaag gctttgcgga 60 tccccggaga ccttcgggta gcaactgtca ccttgatgct ggcgatgctg agctccctac 120 tggctgaggg cagagactct cccggtaagt gcagggcagc tgctctccag agccgccact 180 ctgggaacag gctctccttg ggctggggta tgggggatgg tgatctctat gatcttggac 240 acaatctttc atcaacattt cctctctctt gggaaagaaa gctatgttgc attcccattt 300 atcttttagt gatgagatga ggacaatcca atccccatcc tacaggctta agcctggaag 360 aggaggagag aggagagaaa gaggagataa agtgtacatt tactaccagc gataggacaa 420 agtgagcatg gggttatttt tgaagatatg aatttctcca aagacacagc aggatttgtc 480 atttaggcgt gccccaagac tgcctggact taggattatg agatcctgca ttggaaaatg 540 tgaggcagca atggtgtctg tagtttctgt atttgaggaa aatttgtctc tattcctgac 600 cgagtggagc atttgtggag gcaaaatctt ggtgctgagg gaagctgact ggctgaccac 660 agagagggag tcttcgggtt tcactgattt atgggcaaat ggtgacttga gtgggattca 720 gagacccgag ttaatggtgg actgaattta gtaggaagga ggatgtaaag aagggaaata 780 acacatattg tgaaaccact cacttcagac agaacaatac tttatataac ttctctctca 840 ctccttctaa catcctgtgt gtagatatca tgattttctt ttacacaatt atacttgtga 900 tatggatatt ctgttacata acctgcccaa actggtgact gccacagttt aattggaatc 960 tagtttatca aattcaaaag cttgtgctct ttccatgaat aaatgtctct atctaggact 1020 cagaggtgta ggtcctttcc aacatagaag ggagtgaacc tcaacgggac ttgggagggt 1080 aaatctaggc atgggaagga aggtatttta cccagggacc aagagaatac gcgtgtcaga 1140 acgaggccag gcttaattcc tggacctatc tcgtcattcc gttgaactct cagatttatg 1200 tggataactt tatctctgag gtatccagga gcttcatgaa aaatgggatt tcatgcgaga 1260 acgccctgat ccctctaagt gcagaggtgc atgtaaaatc agcccgactg cctcttcgct 1320 gggttcacag gctcaggcag ggacagggct ttcctccctt tcctggatgt aggaaggcag 1380 attccagaag cccgcaaaga aggcgggcag agctgggcag agccgccggg aggatcccag 1440 gtctggagcg ccaggcacgg gcgggcggga actggaggtc gcgcgggcgg ttccacagct 1500 ccaggccggg tcagggcggc ggctgcgggg gcggccgggc tggggcctga ctgaccggcc 1560 ggtgattccc cgcagaggat ttcgtgtacc agtttaaggg catgtgctac ttcaccaacg 1620 ggacggagcg cgtgcgtctt gtaaccagat acatctataa ccgagaggag tacgcgcgct 1680 tcgacagcga cgtgggggtg taccgggcgg tgacgccgca ggggcggcct gttgccgagt 1740 actggaacag ccagaaggaa gtcctggaga ggacccgggc ggagttggac acggtgtgca 1800 gacacaacta cgaggtgggg taccgcggga tcctgcagag gagaggtgag cgtcgtcgcc 1860 cctccgtgag gcgcaccctt ggccgggacc ccgagtctct gtgccgggag gggcgatggg 1920 ggcgaggtct ctgaaatctg agcccagttc attccacccc aggggaaagg aggcggcggc 1980 ggggtggtgg gggcaggtgc atcggagggg cggggaccta gggcagagca gggggacaag 2040 cagagttggc caggctgcct agtgtccccc ccagcctccc cgtccgtcgg cctcgtcctc 2100 tgctctgcac gtttctcgcc tcgtgcctta tgcgtttgcc tcctcgtgcc ttaccttcgc 2160 taagcagttc tctctgcccc cagtgcccac cctcttcccc tgcccgccgg cctcgctagc 2220 actgccccac ccagcaaggc ccacgtgcgc agcttgcgcc gcaggaagct tcaggcttgg 2280 cctggtggag ttagggctgc cccacaactg cgcgcagggc atccagcaat tacagttgca 2340 aaataagata ttttgacttt ttggcttcaa atcattattc atcgtaattc tgttttctta 2400 aatggctacc actaatggcg gagatctttg aggcgagaga ctgtttaatt attgcatgcc 2460 tggtacctga cacattgact ggtatgtggt gtgagctcaa tgatcttctg ttaaattcat 2520 gaataaatgt actcagctgc caatccagtt aggttcaaga aaaaaacaga ggcttacaaa 2580 tgaactttat caattatttt ctatcatttt gcttaatgct ttcaagtaaa ctcttactga 2640 cttggatctt aatagaattt gtgaatacaa agtctgagga aaatgtgttt gctaaaaata 2700 aaaacaatgc ttgaatgatg ttgtaaggca gagttttaat ttcttagaaa agctgaacaa 2760 atagcactat gcaaagatca gaagtttggg aataaatagg ttgaagctat taaattattg 2820 gataaaaata gtttcaggtt gcttttggcc taggttatcc cctcctccca tcactatcca 2880 cttcaggaat aaacattctg aaagtcaatt ttacccattc aggaagcact tatttctaga 2940 cagttgcctt atcaaatacc atctatatta tgtcatttaa tctcgcagct acctgtgcat 3000 tagagattag catcaccact ttatatatcc taatattggt acatgataaa cactttaagt 3060 aatcagccca caattactca ccaagatctt aagcctccca aagtacacaa cattcttatg 3120 ttcctcacta cacatctgta gagtctaagg gatgtaaggc cttgttaaag ccagttttga 3180 ccagaagcag caatgagtct attcctgttt gttctccatg ttaatgcggc attgaaaatt 3240 catgattaat caatccctag tctgacccca gtgttatcta tgcaggttca caaaactttt 3300 agtttgcttt acactccctt gccttctttt gactcacatc ctaatgccag caagtactta 3360 tatttttgct atttcagttt tatttccatg aaatttattt tatcatcttt tctcataaat 3420 ttgtgccctc tatttttact cccagtctgt tgaagatgaa caaatcttat aaggccacat 3480 agctgactct gatttcagtt ggcctccagg aaggagaacc taaagaaaag ttcaagtcca 3540 agcagaaacc atgattcctt ccggatgatg gctcaagagt gccatttaat tggggtgcca 3600 cctgctgacc tcagcaaatc ccagttatat gtatatgttc acattacagg ctcattagcc 3660 caggccgacc tctgcacgga tctcagaata ttttctgtgg agaacataca cgataatgtc 3720 tgatttcaga acaagaaagt aattgtcaat agcaaggaaa tggagtaggg tagacagcta 3780 gtaattaaac tcacttgtgc gttaaaaaga aattaaggaa aaaaagaaaa tgagagaaca 3840 tattactaaa taaagaaagc acacattaaa tatttgctat agtttcacac taagagaata 3900 aaggaaatgt gataaagtgg cctaaaaggt aaaggatgag atgtgtaaaa gaggcgggga 3960 aagatgtgtc atttttttta ctatgagcag caatctgaga agataaagga attgagttgt 4020 ggacaaacat gatgtttgat caagggttat ttgttttgaa ggcctgccta cttttttttc 4080 aaatattaca aacttttgaa ataacattct actttttttt caaatattac aaacttttga 4140 aataacattc tttttgtttt ttgctgtctg ttactagatt gcacattcta taaatgcagg 4200 gaccatggta tgttatttat ctttgaattc tcagtgattg tcaaatttat atttgttgaa 4260 tgaaccttaa tccaagactt ggactccagg tatctttcca ctctggtcca aggagggatc 4320 cttcctcatg gtagacgtgg tgtgtgttct cacatctcac tcctatgtct tttcctgtct 4380 gttactgccc tcagtggagc ccacagtgac catctcccca tccaggacag aggccctcaa 4440 ccaccacaac ctgctggtct gcttggtgac agatttctat ccaggccaga tcaaagtcca 4500 gtggtttcgg aatgatcagg aggagacagc cggcgttgtg tccacccccc ttattaggaa 4560 tggtgactgg actttccaga tcctggtgat gctggaaatg actccccagc gtggagatgt 4620 ctacacctgc cacgtggagc accccagcct ccagagcccc atcaccgtgg agtggcgtaa 4680 ggggatattg agtttctgtt actatgggcc cacaagacaa agagctcctt ctgacccatt 4740 ccttcccatc tcttatccct gatgtcacta ctgagctggg aatcacagga gactagagca 4800 cctcttgctc catggcaagt gcatcagaag aatcctggtc tcatcacctt tccagatgct 4860 agggaaatta ctctgcatac tgttgctctg aatcccagtc ctgatagctc tgagggactg 4920 attcttaggg ctggtgactg ggatcttagg gtctaaggtt atggatgagt tcttgaagag 4980 cagagatttg cttccccact ctctcaccta ttcactgtat ccaaggacct attggctggt 5040 ctttcccctc cttaggggtg gtctgaatgg agaactagtt tcctttgatg ccttcacctt 5100 ctgcacctca gactggactt caactcctca gcagggatgc tatggggtgt ggggacaaac 5160 acagacactc agttctgctc tttaggggct cagtctgaat ctgcccagag caagatgctg 5220 agtggcgttg gaggcttcgt gctggggctg atcttccttg ggctgggcct tatcatccgt 5280 caaaggagtc agaaaggtga ggaaccccag gggaaaaggg gaagatgggc tgtgacccag 5340 accctctgtt cagagtggtc ctgtctgtag attagctctt tcctcctcac cctgagagga 5400 agtgcgagga gacaggacaa gatgggagga ggcattggaa tctgatttta ctggttgaaa 5460 ggtagcgctg tcacagagct gactgataga gcttattcca gggcatcctt accattcatc 5520 attgtctcac tggctccttt ccaaaagctt cctccattaa gagggtcaga gcctcaactt 5580 cctttctttc tagtgacaat ttcctttgtt ttaggggatt ttaaattagg gtgctgaagg 5640 cctggaagaa catgggtggg aagagaatgt aactctaagt catgtgtgtc attttccttt 5700 ggggtgagag agtggctgtt tgtgtaatga gacctttctc tgcataactt ccttttgtaa 5760 gacctcaagg gcctccacca gcaggtaata tttcagccat gatccagtgt gggtaggcac 5820 aggtataaga gggaagagca tgagctgagt gtacctgacc acagtggtcc atgttcatgg 5880 cctatttgct gctatgagga tcaagactta ggggagaagt ttgccagttt ctaggaatct 5940 ccagacattg ttccccagaa ccaagcctta actttggtgg catcttcttg tgaaatgtgg 6000 agccagaacc acagcttaaa tgttagacac taggatgatg cccactttgt gccacatgat 6060 ggtggctact gcctgtaggc attttccagt gactgaaaga ggctgctagt ggtcgggaag 6120 agatatcatc caatttccta aaaagactga acccttcata ttccccagaa gaataacagc 6180 tgttccccac ctccctcaca tctgcatcaa gctgaagttc tgtgtcctca tgagctgatt 6240 tcacctttgc acagatcttg ggggaggtga tgacaataca ccctggacct caactttctc 6300 tgtctgaagc tgcagggggc cgctgaaggg tgggggagat ggcaggccca ccaggatacc 6360 ctgtgctgat caatgctctt ctctcttctc cagggcttct gcactgactc ctgagactat 6420 tttaactagg attggttatc actcttctgt gatgcctgct tgtgcctgcc cagaattccc 6480 agctgcctgt gtcagcttgt ccccc 6505 //