Dbfetch

Dbfetch

ID   OR364895; SV 1; linear; genomic DNA; STD; HUM; 1083 BP.
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AC   OR364895;
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DT   30-SEP-2023 (Rel. 144, Created)
DT   08-NOV-2023 (Rel. 144, Last updated, Version 6)
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DE   Homo sapiens isolate JH0067 MHC class II antigen (HLA-DPA1) gene,
DE   HLA-DPA1*01:03:01 allele, complete cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1083
RA   Lazaro-Shiben A., Gay K., Folckomer M., Gareau A., Bettinotti M.;
RT   ;
RL   Submitted (28-JUL-2023) to the INSDC.
RL   Pathology, Johns Hopkins, 2041 East Monument St, Baltimore, MD 21205-2222,
RL   USA
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DR   MD5; 54b854c7fd676891be04268e38e20dd1.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: AlloSeq Assign v. 1.0.3.1331
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1083
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /isolate="JH0067"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1083
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01"
FT   mRNA            join(<1..100,201..446,547..828,929..>1083)
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01"
FT                   /product="MHC class II antigen"
FT   CDS             join(1..100,201..446,547..828,929..1083)
FT                   /codon_start=1
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01"
FT                   /product="MHC class II antigen"
FT                   /protein_id="WNH96145.1"
FT                   /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ
FT                   THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL
FT                   IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV
FT                   AESLFLPRTDYSFHKFHYLTFVSSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE
FT                   TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL"
FT   exon            <1..100
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01"
FT                   /number=1
FT   exon            201..446
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01"
FT                   /number=2
FT   exon            547..828
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01"
FT                   /number=3
FT   exon            929..>1083
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01"
FT                   /number=4
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SQ   Sequence 1083 BP; 168 A; 220 C; 215 G; 180 T; 300 other;
     atgcgccctg aagacagaat gttccatatc agagctgtga tcttgagagc cctctccttg        60
     gctttcctgc tgagtctccg aggagctggg gccatcaagg nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       180
     nnnnnnnnnn nnnnnnnnnn cggaccatgt gtcaacttat gccgcgtttg tacagacgca       240
     tagaccaaca ggggagttta tgtttgaatt tgatgaagat gagatgttct atgtggatct       300
     ggacaagaag gagaccgtct ggcatctgga ggagtttggc caagcctttt cctttgaggc       360
     tcagggcggg ctggctaaca ttgctatatt gaacaacaac ttgaatacct tgatccagcg       420
     ttccaaccac actcaggcca ccaacgnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnnnnnatcc ccctgaggtg accgtgtttc ccaaggagcc tgtggagctg ggccagccca       600
     acaccctcat ctgccacatt gacaagttct tcccaccagt gctcaacgtc acgtggctgt       660
     gcaacgggga gctggtcact gagggtgtcg ctgagagcct cttcctgccc agaacagatt       720
     acagcttcca caagttccat tacctgacct ttgtgtcctc agcagaggac ttctatgact       780
     gcagggtgga gcactggggc ttggaccagc cgctcctcaa gcactgggnn nnnnnnnnnn       840
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnag gcccaagagc caatccagat gcctgagaca       960
     acggagactg tgctctgtgc cctgggcctg gtgctgggcc tagtcggcat catcgtgggc      1020
     accgtcctca tcataaagtc tctgcgttct ggccatgacc cccgggccca ggggaccctg      1080
     tga                                                                    1083
//