Dbfetch
ID OR090890; SV 1; linear; genomic DNA; STD; HUM; 5683 BP. XX AC OR090890; XX DT 22-AUG-2023 (Rel. 144, Created) DT 23-AUG-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1*01var allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5683 RA Tejeda Velarde A., Gil Etayo F.J., Nino Ramirez J.E., Jimenez Hernaz I., RA Garcia-Sanz R.; RT ; RL Submitted (03-JUN-2023) to the INSDC. RL HLA and Molecular Biology Unit, Salamanca University Hospital, Paseo de la RL Transicion Espanola s/n, Salamanca, Salamanca 37007, Spain XX DR MD5; be39da625749fceec49575a3867b43c4. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.29 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5683 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..5683 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT mRNA join(1..347,4125..4373,4787..5068,5425..5683) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /product="MHC class II antigen" FT exon 1..347 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=1 FT 5'UTR 1..265 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT CDS join(266..347,4125..4373,4787..5068,5425..5579) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /product="MHC class II antigen" FT /protein_id="WLS31383.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQFTHEFDGDEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" FT intron 348..4124 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=1 FT exon 4125..4373 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=2 FT intron 4374..4786 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=2 FT exon 4787..5068 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=3 FT intron 5069..5424 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=3 FT exon 5425..5683 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=4 FT 3'UTR 5580..5683 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" XX SQ Sequence 5683 BP; 1639 A; 1197 C; 1267 G; 1580 T; 0 other; gtcctccctt tattcataga acaattcctc aagtccactc tgagtagagg ctgcatcaca 60 aggggattgc cccgtctcct tccagggctc ttaatacaaa ctcttcaact agtaactgag 120 atgtcaccat aggggatttt tctaattggc caaaacctga cttggcaggg tttggtttgg 180 gtgtcttcag atttccttgt cttgaggtcc tcacaattac tctacagctc agaacaccaa 240 ctgctgaggc tgccttggga agaggatgat cctaaacaaa gctctgctgc tgggggccct 300 cgctctgacc accgtgatga gcccctgtgg aggtgaagac attgtgggtg agtgcatgag 360 tgagggatgt tctctggagc tgaaaaacag taaattgaag gaaaagagat aaagcgattt 420 gcagagaaac tgtagagatt tcctaagggc cctttcagta ttaagacaat taaaaattat 480 agctgttcct ccttcaggaa accagagccc caacctactc tttttgttat ctatgctgtt 540 gtgttcacta aggacgctat tctgtttata ttatattcag tgactacagc ctggaggtct 600 ctatgtcgtt ccatcatgat tgcctcaaaa attagtgagg tttccatcag tggataattt 660 tttattatta aaaatttatg aagtgtcatt ctcaaatttc cctgaacaac ttttgaagct 720 tttcggatgt ctccggtggt agatcttggg gtcattccat caattatgta ctctatagat 780 atttaaaatg ttgcccgttt ctttctctca gacttactca catttccaca tgggaactgg 840 cacaggtggg gagtgggtaa aggagtccag caggctgaat gccttcaaca gtcattttac 900 cacatggtcc tcacttactc tcagctgcct catatgtgtc acctcacaag taatcaaata 960 aaatgggcat gtggctaagt tttgtaaata gtgaaaacat gaatgtcaat tttttttaca 1020 tatttctatt acagatatag cttcacattt cttttcttta gcaaaataag ggatcatttt 1080 attttaaaat tgagaagtag aaaaaattgg taaaataaat cattttattc tcaaattatc 1140 aacccaaatt acctgttctt cacctcatct aataaagtcc tataaaaaga aaagtgggcc 1200 agacaaggtg gctcatgcct gtaatcccag cactttggga ggccgaggca ggaggatcat 1260 ttgagcctgg gagcttgaga ccagcctggg caacatagca agacctcatc tctacaaaaa 1320 aagaaaaata aaaattagcc aggcatggtg gtgtgtgcct gtggtgccag ctactcagaa 1380 ggctgccgtg ggaggaccac ttgagtccat gaggcggaag ctgcagtgag ccatgatggc 1440 accactacac tccagccagg gcaacagaga gagactctgt ctcaaaaaga aagaggaaag 1500 aaagcaagga accaaggaag gaaggaagga aggagaagga aggaaggaaa agaaaagaaa 1560 agggaaggga ggaaggaagg aaaaaagaaa gacggaaaga aaaaggaagg aaggaagaaa 1620 ggaagcacag attaattatt tggtctctta ctctcctctg cctttgtcgt ccatctcttt 1680 ccacctctct tgatgcattc ctttctcccc cttccctttc aggatccacc tctggctccc 1740 tgctccttta tagatatgga cagtgggttt gtaaagcaaa agttgaaaag tcagatagtt 1800 aaaaggggaa gtgaactgga aggtactcta aactttcaca actttattaa ccgtggctgc 1860 tcccattatg attttgttcg gcagtggaag tttcacctgc ttctccagag cacttggcat 1920 ctttgttcca aatttccttt cttcagcctc acaccagagt gccctggtca ggctcggctc 1980 atccattagg cactatgtgg gcagtgcagg ggaccctcca tactgtaaag ccacatgaga 2040 aggttttaac accttttaaa attagaaaaa taatggaata ttagagccta agaaaatgtt 2100 ttaactttta attcagccta gattatattg tctttatacc aattcagtca taaaatataa 2160 ttttccatat ttttatggag gaaggggccc atacaagcaa gaatgctcgg ggctcacatg 2220 tcagaatgca gccttggtca tgactgatcc tggcgtttgt atggttctgc tacctgtgtg 2280 cctgtccgtc ttccccaaaa tctgtgtggt cctcgaatat agcaactgtc attcaataca 2340 catgtttgag cacacagtga gctaagtttt aaggattcaa agatgaaaag tcatgctgtc 2400 ttccctgcag agggtgctca gattagtgat ggaaacagtg tggggtgcag gaaagcagaa 2460 ggccattgct gagcagggca gtggacccag cagaggctga aacaatacaa gtgacttggt 2520 tccaggtggg ccagcagggt gacgtcctct agcaaaattt ggcacccaag acaagtacca 2580 gaagaaaaga aagactgcat gtattccaca tatattcatg tttgaacaag gagtcaagat 2640 ttatggcaag gataaggagg ctttgttggt gacctgttaa gaccaaccag ggcagtcatg 2700 ctggataggg aagaaggtga gctggaagag gaacagacaa acttggacag ccagatgttg 2760 agatggaggg gttggaggtc ataatgtggt caaaacatgt tgatgagagg actcagctac 2820 aaagttgtta acttaagcag aaacctcaag gatggatttt agaatttctc caggaagtcc 2880 taaaagataa ttccttttca gggagaaaaa caacagacca ctgcaaagac cagggaacat 2940 gaaaggataa tgtagtttgg cttgcttggc agatactttt gaaggatgtt ggactgtaag 3000 gctgtcgata tcctcctcac agaacttact acagtacatt gtatctgttc ccttacctac 3060 ctgactcttc cactattcag tttgttcctt aatggtagac catgcctgat tggtgtttta 3120 cacatctccg gctatgtctg acacttgtgg atgctcagaa agtggggaag gaaggaaaga 3180 tacgatggta aaaggcttac acatgtcttg acaagaaagt ccagttcggc tcatttggct 3240 ggagtcgtac tgcatggctg ccattctgct ctggcatcct cagacaagca cactgcccat 3300 tagaggaaaa agtgtgaata taagtgttga gtcagaatgc tgtagacatt tagtaacctc 3360 cttcacagga aaaaaaaaag atggggggaa tgacagaaat ccaaaaacta gtagagcttc 3420 cacttttcat ttcagaagaa atcagttgct ctcctataag gaccattact attaacaaaa 3480 cagagacctt agaaggaggc attgtttatt tattatatat tttgtaatgt tattaccaat 3540 cttgttatac tctttcttat accctacaat tgttagcaga aattatttta aattaataag 3600 atcctgcatg cttttcctta aaaaaaaaaa aaagaaagaa agaaagatct ctgtgtagag 3660 tgtcctattc tgagccagtc ctgagaggaa gggaagtata atcaatttgt tattaaccga 3720 tgaaagaatt aagtgaaaga taaatctcag gaagcagagg gaagtaaacc taatctctga 3780 ctaagaaagc taaatactat gataactcat tcattccttc ttttgttcaa ttacattatt 3840 taatcataag tccatgacgt gccaggcact caggaaatag taaaaattgg acgtgcgata 3900 ttctgccctt gtgtagcgca cactagagtg ggaaagaaag tgcactttta actggacaac 3960 taccaacatg atgaggggag gaaacagggg ctggaaatgt ccacggactg tgccgaaaaa 4020 tgaagcccat aatatttgaa agtcagtttc ttccatcatt ttgtgtatta aggttctttc 4080 ttcccctgtt ctccgccttc ctgcttgtca tcttcactca tcagctgacc atgttgcctc 4140 ttgtggtgta aacttgtacc agttttacgg tccctctggc cagttcaccc atgaatttga 4200 tggagatgag cagttctacg tggacctgga gaagaaggag actgcctggc ggtggcctga 4260 gttcagcaaa tttggaggtt ttgacccgca gggtgcactg agaaacatgg ctgtggcaaa 4320 acacaacttg aacatcatga ttaaacgcta caactctacc gctgctacca atggtatgcg 4380 tccaccattc tgcctctctt tacttaagct atcccttcat accagggttc attattttct 4440 tcccaagagg tccccagatc ttcttatggc aattgctgaa attttatcat ctcccatctc 4500 taaaatcaca tattcccatg taatacaagg gtctttccat tatgcattca gcaaatcctt 4560 ctaggagagg tctcatcaac ctcctacttt attaaacatg cccacagaga gaagggcaca 4620 ggaataaagc agaggcaatg tgtcattgct cccaagcaga aggtaaataa gacctctttg 4680 actatcaggt ggtgaaatgc tggtaggagg gctcttccag gatgtaatgc agaacttcag 4740 ggcagagcta ttcacacttc acaccagtgc tgtttcctca ccacagaggt tcctgaggtc 4800 acagtgtttt ccaagtctcc cgtgacactg ggtcagccca acaccctcat ctgtcttgtg 4860 gacaacatct ttcctcctgt ggtcaacatc acatggctga gcaatgggca cgcagtcaca 4920 gaaggtgttt ctgagaccag cttcctctcc aagagtgatc attccttctt caagatcagt 4980 tacctcacct tcctcccttc tgctgatgag atttatgact gcaaggtgga gcactggggc 5040 ctggaccagc ctcttctgaa acactggggt aaggatgagt ttcatcattt tttgattctt 5100 tcttgtctgt caggttcaga acttcctgcc ttttactcct atatccaaaa acttgttttc 5160 cacacttcat gggtttcttt tctgtctcac tttttttttt gaaagaataa agcaaaaaaa 5220 gcagagattt attgaaaatg aaagtacact ctacaggatg ggagtgggcc tgccacttca 5280 tggttttcta atgatagact tcactctcct ccctaagctg ggggccttga gtctttgtag 5340 agccaaccct gtaccccatc ccatcccaca cacatgcaca tgagcaaact ctgcattctg 5400 acctcaacaa cttcacttcc acagagcctg agattccagc ccctatgtca gagctcacag 5460 agactgtggt ctgtgccctg gggttgtctg tgggcctcgt gggcattgtg gtgggcactg 5520 tcttcatcat ccaaggcctg cgttcagttg gtgcttccag acaccaaggg cccttgtgaa 5580 tcccatcctg gaagggaagg taagattgag actggttaca gttgaagcgg cagtatgaaa 5640 ggaaggaaag tgggagggcg ttgtggacat gaatgtggtt taa 5683 //