Dbfetch
ID OQ354652; SV 1; linear; genomic DNA; STD; HUM; 5676 BP. XX AC OQ354652; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate 202217717 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*01var allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5676 RA Tejeda Velarde A., Gil Etayo F.J., Nino Ramirez J.E., Vicente Parra A., RA Garcia-Sanz R.; RT ; RL Submitted (25-JAN-2023) to the INSDC. RL HLA and Molecular Biology Unit, Salamanca University Hospital, Paseo de la RL Transicion Espanola s/n, Salamanca, Salamanca 37007, Spain XX DR MD5; c6a0a1bd7424fb3ca597fa38086e3b38. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.28 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5676 FT /organism="Homo sapiens" FT /isolate="202217717" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..5676 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT mRNA join(1..347,4118..4366,4780..5061,5418..5676) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /product="MHC class II antigen" FT exon 1..347 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=1 FT 5'UTR 1..265 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT CDS join(266..347,4118..4366,4780..5061,5418..5572) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /product="MHC class II antigen" FT /protein_id="WEC89209.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQYTHEFDGDEQFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLMGIVVGTVFIIQGLRSVGASRHQGPL" FT intron 348..4117 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=1 FT exon 4118..4366 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=2 FT intron 4367..4779 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=2 FT exon 4780..5061 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=3 FT intron 5062..5417 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=3 FT exon 5418..5676 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=4 FT 3'UTR 5573..5676 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" XX SQ Sequence 5676 BP; 1647 A; 1195 C; 1254 G; 1580 T; 0 other; gtcctccctt tattcataga acaattcctc aagtccactc tgagtagagg ctgcatcaca 60 aggggattgc cccgtctcct tccagggctc ttaatacaaa ctcttcaact agtaactgag 120 atgtcaccat aggggatttt tctaattggc caaaacctga cttggcaggg tttggtttgg 180 gtgtcttcag atttccttgt cttgaggtcc tcacaattac tctacagctc agaacaccaa 240 ctgctgaggc tgccttggga agaggatgat cctaaacaaa gctctgctgc tgggggccct 300 cgctctgacc accgtgatga gcccctgtgg aggtgaagac attgtgggtg agtgcatgag 360 tgagggatgt tctctggagc tgaaaaacag taaattgaag gaaaagagat aaagcgattt 420 gcagagaaac tgtagagatt tcctaagggc cctttcagta ttaagacaat taaaaattat 480 agctgttcct ccttcaggaa accagagccc caacctactc tttttgttat ctatgctgtt 540 gtgttcacta aggacgctat tctgtttata ttatattcag tgactacagc ctggaggtct 600 ctatgtcgtt ccgtcatgat tgcctcaaaa attagtgagg tttccatcag tggataattt 660 tttattatta aaaatttatg aagtgtcatt ctcaaatttc cctgaacaac ttttgaagct 720 tttcggatat ctccggtggt agatcttggg gtcattccat caattatgta ctctatagat 780 atttaaaatg ttgcccattt ctttctctca gacttactta catttccaca tgggaactgg 840 cacaggtggg gagtgggtaa aggagtccag caggctgaat gccttcaaca atcattttac 900 cacatggtcc tcacttactc tcagctgcct catatgtgtc acctcacaag taatcaaata 960 aaatgggcat gtggctaagc tttgtaaata gtgaaaacat gaatgtcaat tttttttaca 1020 tatttctatt acagatatag cttcacattt cttttcttta gcaaaataag ggatcatttt 1080 attttaaaat tgagaagtag aaaaaattgg taaaataaat cattttattc tcaaattatc 1140 aacccaaatt acctgttctt cacctcatct aataaagtcc tataaaaaga aaagtgggcc 1200 agacaaggtg gctcatgcct gtaatcccag cactttggga ggccgaggca ggaggatcat 1260 ttgagcctgg gagcttgaga ccagcctggg caacatagca agacctcatc tctacaaaaa 1320 aagaaaaata aaaattagcc aggcatggtg gtgtgtgcct gtggtgccag ctactcagaa 1380 ggctgccgtg ggaggaccac ttgagtccat gaggcggaag ctgcagtgag ccatggtggc 1440 accactacac tccagccagg gcaacagaga gagacgctgt ctcaaaaaga aagaggaaag 1500 aaagcgagga aggaaggaag gaaggagaag gaaggaagga aggaaaagaa aagaaaaggg 1560 aagggaggaa ggaaggaaaa aagaaagaca gaaagaaaga ggaaggaaag aagaaaggaa 1620 gcacagataa ttatttggtc tcttactctc ctctgccttt gtcgtccatc tcttcccacc 1680 tctcttcatg catccctttc tccctcttcc ctttcaggat ccatctctga ctccctgctc 1740 ctttacagac atgggcagtg ggtttgtaaa acaaaagttg gaaagtcaaa tagttaaaag 1800 gggaagtgaa ctggaaggta ctttaaactt tcacaacttt attaaccgtg gctgctccca 1860 ttatgatttt gttcggcagt ggaagtttca cctgcttctc cagagcactt ggcgtctttg 1920 ttccaaattt cctttcttca acctcacacc agagtgccct ggtcaggctt ggctcattca 1980 ttaggcacaa tgtgggcagt gcaggggacc ctccatactg taaagccaca tgagaaggtt 2040 ttaactcgtt ttaaaattag aaaaataatg gaatattaga gcctaagaaa atgttttaac 2100 ttttaattca gcctagatta tattgtcttt ataccaattc agtcataaaa tataattttc 2160 catatttttg tggaggaaga ggcccataca agcaagaatg ctcggggctc acatgtcaga 2220 atgcagcctt ggtcatgact gatcctggcc ttcgtatggt tctgctacct gtgtgcctgc 2280 ccgtcttccc caaaatctat gtggtcctcg aatatagcaa ctgtcattca atacacatgt 2340 ttgagcacac agtgagctaa gttttaagga ttcaaagatg aaaagtcatg ctgtcttccc 2400 tgcagagggt gctcagatta gtgatggaaa cagtatgggg tgcaggaaag cagaaggcca 2460 ttgctgagca gggcagtgga cccagcagag gctgaaacaa tacaagtgac ttggttccag 2520 gtgggccagc agggtgacgt cctctagcaa aatttggcac ccaagacaag taccagaaga 2580 aaagaaagac tgcatgtatt ccacatatat tcatgtttga acaaggagtc aagatttatg 2640 gcaaggataa ggaggctttg ttggtgacct gttaagacca accagggcag tcatgctgga 2700 tagggaagaa ggtgagctgg aagaggaaca gacaacttgg acagccagat gttgagacgg 2760 aggggttgga ggtcataatg tggtcaaaaa catgttgatg agaggactca gctacaaagt 2820 tgttaactta agcagaaacc tcaaggatgg attttagaat ttctccagga agtcctaaaa 2880 gataattcca tttcagggag aaaaacaaca gaccactgca aagaccaggg aacatgaaag 2940 gataatgtag tttgtcttgc ttggcagata cttttgaagg atgttggact gtaaggctgt 3000 cgatatcctc ctcagagaac ttactacagt acattgtatc tgttccctta cctacctgac 3060 tcttccacta ttcagtttgt tccttaatag tagaccatgc ctgattggtg ttttacacat 3120 ctccggctat gtctgacact tgtggatgct cagaaagtgg ggaaggaagg aaagatacga 3180 tggtaaaagg cttacacatg tcttgacaaa aaagtccagt ttggctcatt tggctggagt 3240 cgtactgcat ggctgccatt ctgctctggc atcctcagac aagcacactg cccattagag 3300 gaaaaagtgt gatataagtg ttgagtcaga atgctgtaga catttagtaa tctccttcac 3360 aggaaaaaaa aaaaaaaagg tggggggaat gacagaaatc caaaaactag tagagcttcc 3420 acttttcatt tcagaagaaa tcagttgctc tcctctaagg accattacta ttaacaaaac 3480 agagacctta gaaggaggca ttgtttattt attatatatt ttgtaatgtt attaccaatc 3540 ttgttatact ctttcttata ccctacaatt gttagcagaa attattttaa attaataaga 3600 tcctgcatgc ttttccttta aaaaaaaaaa aaaagaaaga tctctgtgta gagtgtccta 3660 ttctgagcca gtcctgagag gaaaggaagt ataatcaatt tgttattaac caatgaaaga 3720 attaagtgaa agataaatct caggaagcag agggaagtaa acctaatttc tgactaagaa 3780 agctaaatac tatgataact cattcattcc ttcttttgtt caattacatt atttaatcat 3840 aagtccatga catgccaggc actcaggaaa tagtaaaaat tggacatgcg atattctgcc 3900 cttgtgtagc gcacactaga gtgggaaaga aagtgcactt ttaactggac aactaccaac 3960 atgaagaggg gaggaagcag gggctggaaa tgtccacaga ctgtgccaaa aaatgaagcc 4020 cataatattt gaaagtcagt ttcttccatc attttgtgta ttaaggttct ttcttcccct 4080 gttctctgcc ttcctgcttg tcatcttcac tcatcagctg accacgttgc ctcttgtggt 4140 gtaaacttgt accagtttta cggtccctct ggccagtaca cccatgaatt tgatggagat 4200 gagcagttct acgtggacct ggagaggaag gagactgcct ggcggtggcc tgagttcagc 4260 aaatttggag gttttgaccc gcagggtgca ctgagaaaca tggctgtggc aaaacacaac 4320 ttgaacatca tgattaaacg ctacaactct accgctgcta ccaatggtat gcgtccacca 4380 ttctgcctct ctttacttaa gttatccctc cataccaggg ttcattattt tcttcccaag 4440 aggtccccag atcttcttat ggcaattgct gaaattttat catctcccat ctctaaaatc 4500 acatattccc atgtaataca agggtctttc cattatgcat tcagcaaatc cttctaggag 4560 aggtctcatc aacctcctac tttattaaac atgcccacag agagaagggc acaggaataa 4620 agcagaggca atgtgtcgtt gctcccaagc agaaggtaaa taagacctct ttgactatca 4680 ggtggtgaaa tgctggtagg agggctcttc caggatgtaa tgcagaactt cagggcagag 4740 ctattcacac ttcacaccag tgctgtttcc tcaccacaga ggttcctgag gtcacagtgt 4800 tttccaagtc tcccgtgaca ctgggtcagc ccaacaccct catttgtctt gtggacaaca 4860 tctttcctcc tgtggtcaac atcacatggc tgagcaatgg gcagtcagtc acagaaggtg 4920 tttctgagac cagcttcctc tccaagagtg atcattcctt cttcaagatc agttacctca 4980 ccttcctccc ttctgctgat gagatttatg actgcaaggt ggagcactgg ggcctggacc 5040 agcctcttct gaaacactgg ggtaaggatg agtttcatca ttttttgatt ctttcttgtc 5100 tgtcaagttc agaacttcct gccttttact cctatatcca aaaacttgtt ttccacactt 5160 catgggtttc ttttctgtct ctcttttttt tttgaaagaa taaagcaaaa aaagcagaga 5220 tttattgaaa atgaaagtac actctacagg atgggagtgg gcctgccact tcatggtttt 5280 ctaatgatag acttcactct tctccctaag cctggggcct tgagtctttg cagagccaac 5340 cctctacccc atcccatccc acacacatgc acatgagcac actctgcatt ctgacctcaa 5400 caacttcact tccacagagc ctgagattcc agcccctatg tcagagctca cagagactgt 5460 ggtctgtgcc ctggggttgt ctgtgggcct catgggcatt gtggtgggca ctgtcttcat 5520 catccaaggc ctgcgttcag ttggtgcttc cagacaccaa gggccattgt gaatcccatc 5580 ctggaaggga aggtaagatt gagactggtt acagttgaag cggcagtatg aaaggaagga 5640 aagtgggagg gcgttgtgga catgaatgtg gttgaa 5676 //