Dbfetch
ID OP620424; SV 1; linear; genomic DNA; STD; HUM; 5432 BP. XX AC OP620424; XX DT 11-DEC-2022 (Rel. 144, Created) DT 12-DEC-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate 5991314-262985 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*02NEW allele, exons 2 through 5 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5432 RA Deghaide N.H.S., Martins G.V., Santos V.T., Donadi E.A.; RT ; RL Submitted (11-OCT-2022) to the INSDC. RL Laboratorio de HLA, Hemocentro de Ribeirao Preto, Rua: Tenente Catao Roxo, RL Ribeirao Preto, SP 14051-140, Brazil XX DR MD5; b8782e92fdb0d6272482034046a98a3a. XX CC ##Assembly-Data-START## CC Assembly Method :: TypeStream Visual v. 3.0 CC Assembly Name :: HLA-DQB1*02NEW CC Coverage :: Full Gene CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5432 FT /organism="Homo sapiens" FT /isolate="5991314-262985" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..5432 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT intron <1..208 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=1 FT mRNA join(<209..478,3365..3646,4163..4273,5394..5432) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /product="MHC class II antigen" FT CDS join(<209..478,3365..3646,4163..4273,5394..5407) FT /codon_start=3 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /product="MHC class II antigen" FT /protein_id="WAH70840.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAV FT TLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCNVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGL FT LH" FT exon 209..478 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=2 FT intron 479..3364 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=2 FT exon 3365..3646 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=3 FT intron 3647..4162 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=3 FT exon 4163..4273 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=4 FT intron 4274..5393 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=4 FT exon 5394..5432 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" FT /number=5 FT 3'UTR 5408..5432 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02NEW" XX SQ Sequence 5432 BP; 1351 A; 1266 C; 1322 G; 1493 T; 0 other; ctttaggaag gcggattccc gaagaccccc gagagggcgg gcagggctgg gcagagccgc 60 cgggaggatc ccaggtctgc agcgcgaggc acgggccggc gggaacttgt ggtcgcgcgg 120 gctgttccac agctccgggc cgggtcaggg tggcggctgc gggggcggac gggctgggcc 180 gcactgactg gccggtgatt cctcgcagag gatttcgtgt accagtttaa gggcatgtgc 240 tacttcacca acgggacaga gcgcgtgcgt cttgtgagca gaagcatcta taaccgagaa 300 gagatcgtgc gcttcgacag cgacgtgggg gagttccggg cggtgacgct gctggggctg 360 cctgccgccg agtactggaa cagccagaag gacatcctgg agaggaaacg ggcggcggtg 420 gacagggtgt gcagacacaa ctaccagttg gagctccgca cgaccttgca gcggcgaggt 480 gagcggcgtc gcccctctgc gaggcccacc cttggcccca agtctctgcg ccaggagggg 540 cgaagggtcg ttgcctctgg aacctgagcc ccgtttgttc caccccagag gacaggaggc 600 agcggcgaga gtggtggggg caggtgcatc ggaggtgcgg ggacctaggg cagagcaggg 660 ggacaggcag agttggccag gctgcctagt gtcgccccag cctacccgtt cgtcggcctt 720 gtcctctgct ctgcatgttc ttgcctcgtg ccttatgcat ttgcctcctt ttgccttacc 780 tttgctaagc agctctctct gctcagaatg cccgccctct tcccctgccc gcccgcccgc 840 cccgctagca ctgccccacc cagcaaggcc cacgtgcaca gctcttgcag caggaagctt 900 caggcttagc ctggtggagt tagggctgtt ccacaactgc gcgcaggaca tccagcaatt 960 acagttgtga aataagatat tttaactttt ggcttcaaat cattattcat cgtaattctg 1020 ttttcttaaa tggctctcat tcatggcaga gatctttgag gtgagggtgt tttaatcatt 1080 gcatgcctag tacctgacac attgactggt atgtggtgtg agctcaatga tcttctgtta 1140 aattaatgaa taaatgtact cagctgccca tccacttagg ctcaagaaaa aaaaagaggt 1200 aaacagagcc ttaaaaatgg actttattaa ttattttcta taattttgct taatgcttta 1260 aagtaaactc ttattgactt ggatcttaat agagtttgtg aatacaaaat ctgaggaaaa 1320 aagtttttgc taaaaataaa aacaacgctt gaaagatatt gtaatgcagt ttaaatttct 1380 tttctttttt tttttttttt ttgagacgga ttctcactct gtcgcccagg ccggagtgca 1440 gtggcgcgat ctcggctcac tgcaagctcc gcctcccggg ttcacgccat tctcctgcct 1500 cagcctcctg agtaggtggg attacaggcg cgtgccacca cgcccggcta atttttttgt 1560 atttttagta gaggcggggt ttcaccgtgt tagccaggat ggtctggatc tcctgacctc 1620 atgatccgcc cgcctcggcc tcccaaagtg ctgggattac aggtgtgagc cacagtgccc 1680 ggccggcact tttaatttct tagaaaagct gaacaaatgg cacaatgcaa agagcaaaag 1740 ttttggaata aatagattga agccattaaa ttattggata aaaatagttt cgggttgctt 1800 ttggcctagg ttctcccctc cccccatgac tatccacttc aggaataaac attctgaaag 1860 tcaattttac ccatttagtg agcatttatt tctagacagt tgccttatca aataccatct 1920 atgttacgtc atttaatctc acagttactt gtgcatcaga gattagcatc accactttat 1980 atattggtac atgataaaca ctttattggt catggatggg gagatggtca ctgtaggcta 2040 atattggtac atgataaaca ctttaagtaa tcagcccata attgctcacc aagaccttaa 2100 gcctcccaaa gtacacaaca ttctttgtgt tcttcactac acatccatag agtctaaggg 2160 acgtaaagcc tcgttaaagc cagttttgac cagaagcagc aatgagtcta ttcctgtgtg 2220 ttttccatgt taatgggaca aaatgatact ttcaaggcat tgaaaattca tgattaatca 2280 atcgctagtc tgaccccagt gttatctatg caggtttgca aaacctttag tttacttaat 2340 actcccttgc cttcttttga ttcacatcct aatgccagca aatacttatg tttttgctat 2400 ttcagttcca tttccataaa atttatttta tcatcttttc tcataaattt atgccctcta 2460 tttttactcc caatctgttt aagatgaaca aatcttataa ggccacatag ctgactgtta 2520 tttctgttgg actccaggaa ggagaaccta aagaaaagtt caagtccaag cagaaaccgt 2580 gatttcttcc agatgatggc tcatgagtgc catttaattg gggtgccacc tggtgacctc 2640 agcaaatccc agctatattt atgtgttcac attacaggat cattaaccca gaccgaccac 2700 tgcacagatc tcagaatatt ttctatggag aacatacata ataatgcctg atttcagaag 2760 aagaaagtaa ttctcaatag caaggggatg gagtagggta gacagctgta attaaactca 2820 cttgtgtgat aaaaagaaat taaggaaaaa agaaaatgag agaacatatt actaaataaa 2880 gaaagcatac attaaatatt tactatagtt tcacactaag agaataaagg aaatgcaata 2940 aagtggcctg aaaggtaaag gatgagatgt gtaaaggggt gtagtatttt tactatgagc 3000 agcaatctga gaagataaag gaatcgagtt acgggcaaac atgatgtttg atcagtgtta 3060 tttgttttca aggcctgcct aaattttttt caaatattac aaacttttga aataacattc 3120 tttttgtttt ttgctgtctg ttactaggtt gcacatttta taaaggcagg gaccatggta 3180 tgttgtttgt ctttggattc tcagtgattg ttatatttat atttgttgaa ggaaccttaa 3240 tccaagactt ggactccaag tatctttcca ctctggttcc aaggagggac cttcctcaca 3300 gcaggcatgc tgtgtggtct cacatctcac tcctatatct ttccctgtct gttactgccc 3360 tcagtggagc ccacagtgac catctcccca tccaggacag aggccctcaa ccaccacaac 3420 ctgctggtct gctcggtgac agatttctat ccagcccaga tcaaagtccg gtggtttcgg 3480 aatggccagg aggagacagc tggcgttgtg tccacccccc ttattaggaa tggtgactgg 3540 accttccaga tcctggtgat gctggaaatg actccccagc gtggagacgt ctacacctgc 3600 aacgtggagc accccagcct ccagagcccc atcaccgtgg agtggcgtaa ggggatattg 3660 agtttctgtt actgtgggcc ccacaagaca aaggacagag ctccttctga cccatccctt 3720 cccatctctt atccctgatg tcactgctga gctgggaatc acaggagact agagcacctc 3780 tagttccatg gcgagtgcat cagaagaatc ctgatctcat cacctttcca gatgctaggg 3840 aaattactct acatactgtt gctctggatc ccagtcctga ttgctctgag gaactgatta 3900 ttagggctgg tgactgggat cttagggtct aagtttatgg atgagttcct gaggagtgga 3960 gatctgcttc cccactctgt cacctactca ctgtatccaa gtacctattg gctggccttt 4020 ccctccctta ggggtggtct gaatggagaa ctaggttcct ttgatgcctt cacctcctgc 4080 atctcagact ggacttcagc tcctcatcag ggaaactatg gggtatgggg acaaacactg 4140 acactcaggc tctgcttctc aggggctcaa tctgaatctg cccagagcaa gatgctgagt 4200 ggcattggag gcttcgtgct ggggctgatc ttcctcgggc tgggccttat catccatcac 4260 aggagtcaga aaggtgagga accccagggg aaaaggggaa gatggcctgt gacccagacc 4320 ctctgttcag agaggtcctg tctctagatg tagctctttc ctcctgaccc tgagaggaag 4380 aaagctgagc tggaagtgga aggagacagg acaaggttgg aggaggcatt ggaatctgat 4440 tttactagct gaagggtagc cctgtcacag agctgactga tagagcttat tccagggcat 4500 ccttaccatt catcattgtc tcactggctc ctttccaaaa acttcctcca ttaagagggt 4560 cagagcctcg gcctccttgc cttctagtga caatttcctt tattttaggg gattttaaat 4620 tagggtgctt aaggacttga agaacatgaa tgggaagaga atataactct aattaagtca 4680 catgtgtcat tttcctttgg ggtgagagag tggctgttca tgtaatgaga cctttctctg 4740 cataacttcc ttttgtaaga cctcaagggc ctccaccagc aggtaatatt tcagccgtga 4800 tccagtgtgg ggagggcaca ggtgtaagag ggaagagcat gagctgagtg tacctgacag 4860 tagtggtctc tgttcatggt atatttgctg ctatgaggat caagacttag gggtgaagtt 4920 tgccagtttc taggaatctc cagaggttgt tccccagaac caagccttaa ctttggtggt 4980 atcttcctgt gaaatgtgga gccagaacca cggcttaaat gttagacact aggatgatgc 5040 ccactttgtg ccacatgatg gtggctactg cctgtaggca ttttccagtg actgaaagag 5100 gctgctagtg gtagggatga ggtatcatcc aatttcctaa aaagattgaa cccttcatat 5160 tcaccagaag agtaacagct gttcccccac ctcccacaca tctgcatcaa gctgaagttc 5220 tgtgtcttca tgagctgatt tcacctttgc acagatcttg ggggaggtga tgataataca 5280 ctctggacct cagctttgtc tgtctgaagc tgcaggaggc ccctgagggg tgggggagat 5340 ggcaggccca ccagcgtacc ctgtgctgat catccctctt ctctcttctt cagggctcct 5400 gcactgactc ctgagactat tttaactggg at 5432 //