Dbfetch
ID ON866583; SV 1; linear; genomic DNA; STD; HUM; 3789 BP. XX AC ON866583; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate DE-SMS_A-589015 nonclassical MHC class I antigen DE (HLA-E) gene, HLA-E*01:01:01:01v2var allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3789 RA Busch Y., Diegel J., Trojok P., Shealy G., Schweizer A., Schaefer M., RA Peter W.; RT "Identification and confirmation of novel HLA-E alleles by nanopore RT sequencing"; RL Unpublished. XX RN [2] RP 1-3789 RA Busch Y., Diegel J., Trojok P., Shealy G., Schweizer A., Schaefer M., RA Peter W.; RT ; RL Submitted (28-JUN-2022) to the INSDC. RL HLA-Laboratory, Stefan-Morsch-Foundation, Dambacher Weg 3-5, Birkenfeld RL 55765, Germany XX DR MD5; 3370beada556c0436cfff190f5b763ec. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.25 CC Sequencing Technology :: Illumina; Oxford Nanopore Technologies CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3789 FT /organism="Homo sapiens" FT /isolate="DE-SMS_A-589015" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..3789 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT mRNA join(1..331,462..731,976..1251,1873..2148,2273..2389, FT 3140..3172,3277..3319,3485..3789) FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /product="nonclassical MHC class I antigen" FT exon 1..331 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=1 FT 5'UTR 1..267 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT CDS join(268..331,462..731,976..1251,1873..2148,2273..2389, FT 3140..3172,3277..3317) FT /codon_start=1 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /product="nonclassical MHC class I antigen" FT /protein_id="WEC89293.1" FT /translation="MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFIS FT VGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRG FT YYNQSEAGSHTLQWMHGCELGPDRRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQI FT SEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATL FT RCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCH FT VQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGS FT YSKAEWSDSAQGSESHSL" FT intron 332..461 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=1 FT exon 462..731 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=2 FT intron 732..975 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=2 FT exon 976..1251 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=3 FT intron 1252..1872 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=3 FT exon 1873..2148 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=4 FT intron 2149..2272 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=4 FT exon 2273..2389 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=5 FT intron 2390..3139 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=5 FT exon 3140..3172 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=6 FT intron 3173..3276 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=6 FT exon 3277..3319 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=7 FT 3'UTR join(3318..3319,3485..3789) FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT intron 3320..3484 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=7 FT exon 3485..3789 FT /gene="HLA-E" FT /allele="HLA-E*01:01:01:01v2var" FT /number=8 XX SQ Sequence 3789 BP; 764 A; 1070 C; 1091 G; 864 T; 0 other; gcccagccag gactaatttc taagagtgtg cagagatacc gaaacctaaa agtttaagaa 60 ctgctgattg ctgggaaact ctgcagtttc ccgttcctct cgtaacctgg tcatgtgtcc 120 ttcttcctgg atactcatga cgcagactca gttctcattc ccaatgggtg tcgggtttct 180 agagaagcca atcagcgtcg ccacgactcc cgactataaa gtccccatcc ggactcaaga 240 agttctcagg actcagaggc tgggatcatg gtagatggaa ccctcctttt actcctctcg 300 gaggccctgg cccttaccca gacctgggcg ggtgagtgcg gggtcgggat ggaaacggcc 360 tctaccggga gtagagaggg gccggcccgg cgggggcgaa ggactcgggg agccgcgccg 420 ggaggagggt cgggccgatc tcagcccctc ctcgccccca ggctcccact ccttgaagta 480 tttccacact tccgtgtccc ggcccggccg cggggagccc cgcttcatct ctgtgggcta 540 cgtggacgac acccagttcg tgcgcttcga caacgacgcc gcgagtccga ggatggtgcc 600 gcgggcgccg tggatggagc aggaggggtc agagtattgg gaccgggaga cacggagcgc 660 cagggacacc gcacagattt tccgagtgaa cctgcggacg ctgcgcggct actacaatca 720 gagcgaggcc ggtgagtgac cccggccagg ggagcaggtc acgacccctc cccatccccc 780 acggacggcg cgggtcccct cgaatcttcg ggtcccagat tcaccccaag gctgcggaac 840 ccgcccagac cctagaccgg ggagagtctc aggcgccttt acccggttct ttttcagttt 900 aggccaaaat gcccacaggg tggtggcgac gggggcgggg cttggtgggc gggactgact 960 aaggggcggg gccagggtct cacaccctgc agtggatgca tggctgcgag ctggggcccg 1020 acaggcgctt cctccgcggg tatgaacagt tcgcctacga cggcaaggat tatctcaccc 1080 tgaatgagga cctgcgctcc tggaccgcgg tggacacggc ggctcagatc tccgagcaaa 1140 agtcaaatga tgcctctgag gcggagcacc agagagccta cctggaagac acatgcgtgg 1200 agtggctcca caaatacctg gagaagggga aggagacgct gcttcacctc ggtaagaggg 1260 tccacagggc tactctccca tctccttctt gggctaggac tgtgcccaca gctgacagac 1320 ctcaaacagt agaagaaaca gggatggagg ccagaatacc actcctccct tggatcagga 1380 gagggagctg tcacctgagg tacaggagat cctataccac agagtgactc tcttaaaggg 1440 ccagacctct ctcaggggca attaaggaat ctagtctcgc tggagattcc atccttcaga 1500 tgaactgatg agcagttctc tttgactccc agtattagga atcacggggg agtttctctc 1560 gtgcctgatt ctcagcccca caccaagagt ttttggaggt ctgactccag cttttctcag 1620 tcactcagca tccacacagg ccaggaccag aaatcccttt tcaccttcta ccctgggcta 1680 gctcatcccg attctagaac tttccaagga ataagaggct atcccagatc cctaagtcca 1740 ggctggtgtc aaggttttgt cctcttctcc tactataatt gtcctcttcc ttctcaggat 1800 ggtcacatgg gtgctgctgg agtgtcccat gagagataca aagtgcctga attttctgac 1860 tcttcccctc agagccccca aagacacacg tgactcacca ccccatctct gaccatgagg 1920 ccaccctgag gtgctgggcc ctgggcttct accctgcgga gatcacactg acctggcagc 1980 aggatgggga gggccatacc caggacacgg agctcgtgga gaccaggcct gcaggggatg 2040 gaaccttcca gaagtgggca gctgtggtgg tgccttctgg agaggagcag agatacacgt 2100 gccatgtgca gcatgagggg ctacccgagc ccgtcaccct gagatggagt aaggaggggg 2160 atgggaggtc atgtctcttc tcagggaaag cgggagccct tctggagccc ttccgcaggg 2220 tcagggctga ggcctggggg tcagggcccc ttacgttccc ctcttttccc agagccggct 2280 tcccagccca ccatccccat cgtgggcatc attgctggcc tggttctcct tggatctgtg 2340 gtctctggag ctgtggttgc tgctgtgata tggaggaaga agagctcagg tggggaaggg 2400 agaagggtgg ggtctgagtt ttcttgtccc actgggtgtt tcaagcccta ggtaaaagtg 2460 tgtcctgcct cgttactggg aagcaccatc cacacacacg agcctaccca gcctggggcc 2520 ctgtgtgcca gcacctactc tttttttttg agacggagtc ttggctctgt cacccaggct 2580 ggagtgcaat ggcgtggttt cagctcactg caacctccgc ctcccaggtt caagcaattc 2640 tcctgcctca gcctccctag tagctgggac tacacatgcg tgccaccaca cctggctaat 2700 tttttttttt gtatttttag tggagatggg gtttcactat gttggccagg ctggtctcga 2760 actcctgact ttgtgatctg cctgcctcgg cctcccaaag tgctgggatt acagtcgtga 2820 gccaccgcac ccagccgcac ctactctttt gtaaagcacc tgtgacaatg aaggacagat 2880 ttatcacctt gacgattgtg gtgatgggga cctgatccca gcagtcacag gtcacagggg 2940 aaggtccctg ctgaagacag acctcagaag ggcagttgat ccaggaccca cacctgcttt 3000 cttcacgttt cctgatcctg ccctgggtct gcagtcacag ttcaggaaac ttctctggga 3060 tccaaaacta ggaggttcct ctaggacctt atggccctgc ctcctccctg gcccctcaca 3120 ggacattttc ttccaacagg tggaaaagga gggagctact ctaaggctga gtgtaagtgc 3180 ggggcgggag cgtggaggag ctcgcccacc ctataattcc tcctgcacca catctcctgt 3240 gggctctgac caggtcttgt ttttgttcta ccccagggag cgacagtgcc caggggtctg 3300 agtctcacag cttgtaaagg tgagattctg ggggtctgaa gtgggtggag ggtggggcag 3360 aggggacagg actgggttgt ggggattttt tgattcagaa tttttgagtg tgtggtgggc 3420 tgttcagagt gtcatcactt accgtgactg acctgaattt gttcatgact attttcttct 3480 gtagcctgag acagctgcct tgtgtgcgac tgagatgcac agctgccttg tgtgcgactg 3540 agatgcagga tttcctcacg cctcccctat gtgtcttagg ggactctggc ttctcttttt 3600 gcaagggcct ctgaatctgt ctgtgtccct gttagcacaa tgtgaggagg tagagaaaca 3660 gtccacctct gtgtctacca tgaccccctt cctcacactg acctgtgttc cttccctgtt 3720 ctcttttcta ttaaaaataa gaacctgggc agagtgcggc agctcatgcc tgtaatccca 3780 gcacttagg 3789 //