Dbfetch
ID MT113484; SV 1; linear; genomic DNA; STD; HUM; 2978 BP. XX AC MT113484; XX DT 19-MAR-2020 (Rel. 144, Created) DT 19-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class I protein (HLA-B) gene, HLA-B*44var allele, complete DE cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2978 RA Choudhury F., Chowdhury T., Begum I., Haputhantrigei A.K., Niokou D., RA Brown C.J.; RT ; RL Submitted (25-FEB-2020) to the INSDC. RL H&I, NHS BT, Charcot Road, London NW95BG, United Kingdom XX DR MD5; cb14a7ee232f84a3d62c4b45ae880e68. XX CC ##Assembly-Data-START## CC Assembly Method :: NGS engine v. 2.17 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2978 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>2978 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT mRNA join(<1..357,487..756,1000..1275,1851..2126,2220..2336, FT 2778..2810,2917..>2978) FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /product="MHC class I protein" FT exon <1..357 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /number=1 FT 5'UTR <1..284 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT CDS join(285..357,487..756,1000..1275,1851..2126,2220..2336, FT 2778..2810,2917..2960) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /product="MHC class I protein" FT /protein_id="QIJ96586.1" FT /translation="MRVTAPRTLLLLLWGAVTLTETWAGSHSMRYFYTAMSRPGRGEPR FT FITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRT FT ALRYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQDAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAARVAEQLRAYLEGLCVESLRRYLENGKETLQRADPPKTHVTHHPISDHE FT VTLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" FT exon 487..756 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /number=2 FT exon 1000..1275 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /number=3 FT exon 1851..2126 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /number=4 FT exon 2220..2336 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /number=5 FT exon 2778..2810 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /number=6 FT exon 2917..>2978 FT /gene="HLA-B" FT /allele="HLA-B*44var" FT /number=7 FT 3'UTR 2961..>2978 FT /gene="HLA-B" FT /allele="HLA-B*44var" XX SQ Sequence 2978 BP; 553 A; 893 C; 940 G; 592 T; 0 other; gatcaggacg aagtcccagg tcccggacgg ggctctcagg gtctcaggct ccgagggccg 60 cgtctgcaat ggggaggcgc agcgttgggg attccccact cccacgagtt tcacttcttc 120 tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc 180 ccattgggtg tcgggtgtct agagaagcca atcagtgtcg ccggggtccc agttctaaag 240 tccccacgca cccacccgga ctcagaatct cctcagacgc cgagatgcgg gtcacggcgc 300 cccgaaccct cctcctgctg ctctgggggg cagtgaccct gaccgagacc tgggccggtg 360 agtgcggggt cgggagggaa atggcctctg tggggaggag agaggggacc gcaggcgggg 420 gcgcaggacc cggggagccg cgccgggagg agggtcgggc gggtctcagc ccctcctcgc 480 ccccaggctc ccactccatg aggtatttct acaccgccat gtcccggccc ggccgcgggg 540 agccccgctt catcaccgtg ggctacgtgg acgacacgct gttcgtgagg ttcgacagcg 600 acgccacgag tccgaggaag gagccgcggg cgccatggat agagcaggag gggccggagt 660 attgggaccg ggagacacag atctccaaga ccaacacaca gacttaccga gagaacctgc 720 gcaccgcgct ccgctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780 aggtcacgac tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag 840 atccgccccc gaggccgcgg gacccgccca gaccctcgac cggcgagagc cccaggcgcg 900 tttacccggt ttcattttca gttgaggcca aaatccccgc gggttggtcg gggcggggcg 960 gggctcgggg gacggggctg accgcggggc cggggccagg gtctcacatc atccagagga 1020 tgtacggctg cgacgtgggg ccggacgggc gcctcctccg cgggtatgac caggacgcct 1080 acgacggcaa ggattacatc gccctgaacg aggacctgag ctcctggacc gcggcggaca 1140 ccgcggctca gatcacccag cgcaagtggg aggcggcccg tgtggcggag cagctgagag 1200 cctacctgga gggcctgtgc gtggagtcgc tccgcagata cctggagaac gggaaggaga 1260 cgctgcagcg cgcgggtacc aggggcagtg gggagccttc cccatctcct ataggtcgcc 1320 ggggatggcc tcccacgaga agaggaggaa aatgggatca gcgctagaat gtcgccctcc 1380 cttgaatgga gaatggcatg agttttcctg agtttcctct gagggccccc tcttctctct 1440 aggacaatta agggatgacg tctctgagga aatggagggg aagacagtcc ctagaatact 1500 gatcaggggt cccctttgac ccctgcagca gccttgggaa ccgtgacttt tcctctcagg 1560 ccttgttctc tgcctcacac tcagtgtgtt tggggctctg attccagcac ttctgagtca 1620 ctttacctcc actcagatca ggagcagaag tccctgttcc ccgctcagag actcgaactt 1680 tccaatgaat aggagattat cccaggtgcc tgcgtccagg ctggtgtctg ggttctgtgc 1740 cccttcccca ccccaggtgt cctgtccatt ctcaggctgg tcacatgggt ggtcctaggg 1800 tgtcccatga gagatgcaaa gcgcctgaat tttctgactc ttcccatcag accccccaaa 1860 gacacatgtg acccaccacc ccatctctga ccatgaggtc accctgaggt gctgggccct 1920 gggcttctac cctgcggaga tcacactgac ctggcagcgg gatggcgagg accaaactca 1980 ggacaccgag cttgtggaga ccagaccagc aggagataga accttccaga agtgggcagc 2040 tgtggtggtg ccttctggag aagagcagag atacacatgc catgtacagc atgaggggct 2100 gccgaagccc ctcaccctga gatggggtaa ggagggggat gaggggtcat atctcttctc 2160 agggaaagca ggagcccttc agcagggtca gggcccctca tcttcccttc ctttcccaga 2220 gccgtcttcc cagtccaccg tccccatcgt gggcattgtt gctggcctgg ctgtcctagc 2280 agttgtggtc atcggagctg tggtcgctgc tgtgatgtgt aggaggaaga gctcaggtag 2340 ggaaggggtg aggggtgggg tctgggtttt cttgtcccac tgggggtttc aagccccagg 2400 tagaagtgtt ccctgcctca ttactgggaa gcagcatcca cacaggggct aacgcagcct 2460 gggaccctgt gtgccagcac ttactctttt gtgcagcaca tgtgacaatg aaggacggat 2520 gtatcacctt ggtggttgtg gtgttggggt cctgattcca gcattcatga gtcaggggaa 2580 ggtccctgct aaggacagac cttaggaggg cagttggtcc aggacccaca cttgctttcc 2640 tcgtgtttcc tgatcctgcc ttgggtctgt agtcatactt ctggaaattc cttttgggtc 2700 caagacgagg aggttcctct aagatctcat ggccctgctt cctcccagtc ccctcacagg 2760 gcattttctt cccacaggtg gaaaaggagg gagctactct caggctgcgt gtaagtgatg 2820 ggggcgggag tgtggaggag ctcacccacc ccataattcc tcctgtccca cgtctcctgc 2880 gggctctgac caggtcctgt ttttgttcta ctccaggcag cgacagtgcc cagggctctg 2940 atgtgtctct cacagcttga aaaggtgaga ttcttggg 2978 //