Dbfetch
ID MN515043; SV 1; linear; genomic DNA; STD; HUM; 6992 BP. XX AC MN515043; XX DT 03-FEB-2020 (Rel. 143, Created) DT 24-JAN-2024 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens isolate BY01914 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*05:107 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6992 RA Hurley C.K.; RT ; RL Submitted (25-SEP-2019) to the INSDC. RL CW Bill Young Marrow Donor Recruitment and Research Program, Georgetown RL University, 11333 Woodglen Drive, Department of Oncology Georgetown RL University Medical Center CW Bill Young Marrow Donor Recruitment and RL Research Program Room 337, Rockville, MD 20852, USA XX DR MD5; 915f0faa11d18c413c244facca8d422d. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign TruSight v. HLA2.1.0.934; CC Sequencher v. V5.4.6; GenDx v. V1.9.3.4077 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6992 FT /organism="Homo sapiens" FT /chromosome="6" FT /isolate="BY01914" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT CDS join(427..535,1994..2263,4773..5054,5566..5676,6141..6166, FT 6774..>6787) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:107" FT /product="MHC class II antigen" FT /protein_id="QHQ71259.2" FT /translation="MSWKKSLRIPGDLRVATVTLMLAILSSSLAEGRDSPEDFVYQFKG FT LCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYRAVTPQGRPVAEYWNSQKEVLEGAR FT ASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEALNHHNLLICSVTDFYPSQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEQPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRKGLLH" FT gene <427..>6787 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:107" FT mRNA join(<427..535,1994..2263,4773..5054,5566..5676, FT 6774..>6787) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:107" FT /product="MHC class II antigen" XX SQ Sequence 6992 BP; 1772 A; 1616 C; 1692 G; 1912 T; 0 other; gaaatatgat ccccacctaa tttgctttat taaaaatccc aagtataata acaactggtt 60 tttaacaata ttacagagat gtttactgtt gaattgcatt tttcttttgc ctctcaaaat 120 ccctgaggaa tttgttcttc agctcttcta taatcgagag gaaattttca cctcagatgt 180 tcatccagtg caattggaag acgtcacagt gccaggcact ggattgagaa ccttcacaaa 240 aaaaaatgtc tgcccagaga cagatgaggt ccttcagctc cagtgctgat tggttctttt 300 ccaagcgacc atccaatcct gccacgcacg gaaacatcca caggttttta ttctttctgc 360 caggtacatc agatccatca ggtctgagct gtgttgacta ccactacttt tcccttcgtc 420 tcaattatgt cttggaagaa gtctttgcgg atccccggag accttcgggt agcaactgtc 480 accttgatgc tggcgatcct gagctcctca ctggctgagg gcagagactc tcccggtaag 540 tgcaggaaag ctgctctcca gagccgccac tctgggaaca ggctttcctt gggctggggt 600 atgggggatg gtgatctcca tggtcttgga cacaatcttt catcaacatt tcctcttttt 660 tgggaaagaa agctatgttg cattcccatt taccttttag tgatgaaatg aggacaatcc 720 aatccccatc ctacaggttt aagcctggaa gaggaggaga gaggagagga aagaggagat 780 aaagtgtaca tttactacca gtgataggac aaagtgagca tggggttatt tttgaagata 840 ttaatttctc caaagacaca gcaggatttg tcatttcagc gtgccccaag actttgcctg 900 gactaaatat tatgagattc tgcagtggga aatgtaaggc agcgatggtg tctgtagtct 960 ccgtatttga ggaaaagtag tctgtattcc tgactgactg gagcgtttgt ggaggcaaaa 1020 tcttggtact gagggaagct gactggctga ccacagacag ggagtcttca ggtttcactg 1080 atttatgggc aaatggtgac ttgagtggga ttcagagacc cgagttgttg gtggactaaa 1140 tttagtagaa aggaggatgt aaagaaggga aataacacat attatgaaac cactcactca 1200 gacacagaac aatactttac ataaattctc tctcactcct tctaacatcc tgtgtgcaga 1260 tatcatgatt ttcttttaca caattatact tgtgatacgg atattctgcc caatatggat 1320 atacacaacc tggccaagct ggtaactgcc acagtttaat tggaatctag tttatcaaat 1380 tcaaaagctt atgctctttc catgaataaa tatttctatc taggactcag agttgtaggt 1440 cctttccaac atagaaggga gtgaacctca acgggtcttg ggagggtaaa tccaggcatg 1500 ggaaggaagg tattttaccc agggaccaag agaatacgcg tatcagaacg aggacaagat 1560 taattcctgg acctgtcgca tcattccctt gaactcacag gtttatgtgg ataagtttat 1620 ctctgaggtt tccaggagct gcatgaaaaa tgggatttca tgcgagaacg ccccgatccc 1680 tctaagtgca gaggtccatg taaaatcagc ccgactgcct cttcgctggg ttcactggct 1740 caggcaggga cagggctttc cgccctttcc tgcctgtagg aaggcggatt cccgaagccc 1800 ccagagaggg cgggcagggc tgggcagagc cgccgggagg atcccaggtc tggggcgcca 1860 ggcacgggct ggcgggaact ggaggtcgcg cgggcggttc cacagctccg gtccgggtca 1920 gggcggcggc tgggggcgca gccgggctag ggccaggctg gggcctgact gactggcccg 1980 tgattccccg cagaggattt cgtgtaccag tttaagggcc tgtgctactt caccaacggg 2040 acggagcgcg tgcggggtgt gaccagacac atctataacc gagaggagta cgtgcgcttc 2100 gacagcgacg tgggggtgta ccgggcagtg acgccgcagg ggcggcctgt tgccgagtac 2160 tggaacagcc agaaggaagt cctggagggg gcccgggcgt cggtggacag ggtgtgcaga 2220 cacaactacg aggtggcgta ccgcgggatc ctgcagagga gaggtgagcg tcgtcgcccc 2280 tccgtgaggc ccaccgttgg ccgggacctc tagtctctgt gctgggaggg gcgatggggt 2340 tgcggcctct gaaacctgag ccccgtttat tccaccccag gggacaggag ttggcggcgt 2400 gagtggtggg gcaggtgcat cagatgggcg gggacctagg gcagagcagg gagacaagca 2460 gagttggcca ggctgcctag tgtcccccca gggtcctcgt ctgttggcct cgtcctccgc 2520 tctgcacgtt tctcgcctcg tgccttatgt gtttgcctcc tcgtgcctta cctttgctaa 2580 gcagttctct ctgcccccaa tgcccaccct cttcccctgc ccgtccgccc cactagcact 2640 gccccattca gcaaggccca cgtgcgcagc tcgcgccgca ggaagcttca ggcttggcct 2700 ggtggagtta gggctgcccc acaactgcgc ccagggcatc cagcaattac agttgcaaaa 2760 taagatattt tgactttttg gcttcaaatc attattcatc gtaattctgt tttcctaaat 2820 ggctatcact aatggcggag atttttgagg tgggagactg tttaaattat tgcatgcttg 2880 gtacctgaca ctttgactgg tatgtggtat gagctcaatg atcttctgtt aaattcatga 2940 ataaatgtac tcagctgccc atccacttag gctcaagaaa aaaacagagg cttacaaatg 3000 gactttgtta attattttct atcattttgc ctaatgcttt aaagtaaact cttattgact 3060 aggatcttaa tagaatttgt gaatacaaag tctgagaaaa aaagtgtttg ctaaaaataa 3120 aaacaatgct tgaatgacgt tgtaaggcag agttttaatt tcttagacaa gctgaacaaa 3180 tggcacaatg caaagggcag aagtttggga ataaataggt tgaagccatt aaattattag 3240 ataaaaatag tttcaggttg cttttggcct gggttctccc ctccctccat cactatccac 3300 ttcaggaata aacattctga aagtcaattt tacccattca ggtagcactt atttctagac 3360 agttgcctta tcaaatacca tatatgttgt gccatttaat ctcacagtta cctgtgcatt 3420 agagattagc atcaccactt gatatatcct aatattggta caggataaac actttaagta 3480 atcagcccac aattactcac caagacctta agcctcccaa agtataaacc attcttatgt 3540 tcctcagtgt acatccatag agtctaaggg atgtaaggcc ttgttgaagc cagttttgac 3600 cagaagcagc aatgagccta ttcctgtttg ttctccatgt taatggggca ttgaaaattc 3660 actgattaat caatccctag tctgacccca gtgttatcta tgcaggttca caaaactttt 3720 agattacttt acaccccctt gccttctttt gactcacatt ctaatgccag caagtactta 3780 tatttttgct atttcagttc tatttccata aaatttattt tatcatcttt tctcataaaa 3840 ttgtgccctc tattttactc ccagtctgtt taagatgaac aaatcttaca aggtcacata 3900 gctgactgtg atatcagttg gactccagga aggagaacct aaagaaaagt tcaagtccaa 3960 gcagaaaccg tgattccttc cggatgatgg ctcaagagtg atgtttaact gggatgcaac 4020 ctgctgacct cagcaaatcc tagttatatg tatgtgttca cattacaggc tcattagccc 4080 aggccgacct ctgcatggat ctcagaatat tttctatgga gaacatacat gataatgtct 4140 gatttcagaa caagaaagta attctcaata gcaaggaaat ggagtagggt agacagctag 4200 taactaaact cacttgtgcg ttaagaagaa attaaggaaa aaagaaaata agagaacata 4260 ttactaaata aagaaacaca cattaaatat ttgctatagt ttcacactaa gagaataaag 4320 gaaatgcaat aaagtggcct gaaaggtaaa ggatgagatg tgtaaaagag gcagggaaag 4380 atgtataata attttttact atgagcagca atctgagaag ataaaggaat tgagctgtgg 4440 gcaaacatga tgtttgatca gtgttatttg ttttcaaggc ctgcctactt tttttttcaa 4500 atattacaaa cttttgaaat aacattcttt ttgtttttta ctgtctgtta ctagattgca 4560 tattctataa atgaagggac catggtatgt tgtttatctt tggattctca gtgattgtca 4620 aatttatatt tgttgaagga accttaatcc aagacttgga ctccaggtat ctttccactc 4680 tggttccaag gagggaccct tcctcatggt ggacgtgctg tgtggtctca cgtctcactc 4740 ctgtgtcttt tcctgtctgt tactgccctt agtggagccc acagtgacca tctccccatc 4800 caggacagag gccctcaacc accacaacct gctgatctgc tcggtgacag atttctatcc 4860 aagccagatc aaagtccggt ggtttcggaa tgatcaggag gagacagccg gcgttgtgtc 4920 cacccccctc attaggaacg gtgactggac cttccagatc ctggtgatgc tggaaatgac 4980 tccccagcgt ggagatgtct acacctgcca cgtggagcaa cccagcctcc agagccccat 5040 caccgtggag tggcgtaagg agatattgag tttctgttat tatgggcccc acaagacaaa 5100 gagctccttc tgacccattc cttcccatct cttatccctg atgtcactac tgagctggga 5160 atcacaggag actagagcac ctctagttcc atggcgagtg catcagaaga atcctgatct 5220 catcaccttt ccagatgcta gggaaattac tctacatact gttgctctgg atcccagtcc 5280 tgatagctct gacggactga ttcttagggc tggtgattgg gatcttaggg tctaaggtta 5340 tggatgagtt cctgaggagc agagatttgc ttccccactc tctcacctac ccactgtatc 5400 caaggaccta ttgtctggcc tttcccctcc ttaggggtgg tctgaatgga gagctaggtt 5460 cctttgatgc cttcacctcc tgcacctcag actggacttc aactcctcag cagggatgct 5520 atggggtgtg gggacaaaca ctgacactca ggttctgctt tttaggggct cagtctgaat 5580 ctgcccagag caagatgctg agtggcgttg gaggcttcgt gctggggctg atcttccttg 5640 ggcttggcct tatcatccgt caaaggagtc ggaaaggtga ggaaccccag gggaaaaggg 5700 gaagatgggc tgtgacccag accctctgtt cagagtggtc ctgtctgtag attagctctt 5760 tcctcctgac cctgagagga agtgcgagga gacaggacaa gatgggagga ggcattggaa 5820 tctgatttta ctggttgaaa ggtagcgctg tcacagagct gactgataga gcttattcca 5880 gggcatcctt accattcatc attgtctcac tggctccttt ccaaaagctt cctccattaa 5940 gagggtcaga gcctcagcct cctttctttc tggtgacaat ttcctttgtt ttaggggatt 6000 ttaaattagg gtgctgaagg cctggaagaa catgggtggg aagagaatgt aactctaagt 6060 catgtgtgtc attttccttt ggggtgagag agtggctgtt tgtgtaatga gacctttctc 6120 tgcataactt ccttttgtaa gacctcaagg gcctccacca gcaggtaata tttcagccat 6180 gatccagtgt ggggaggcac aggtataaga gggaagagca tgagctgagt gtacctgacc 6240 acagtggtcc atgttcgtgg cctatttgct gctatgagga tcaagactta ggggagaagt 6300 ttgccagttt ctaggaatct ccagacattg ttccccagaa ccaagcctta actttggtgg 6360 catcttcttg tgaaatgtgg agccagaacc acagcttaaa tgttagacac taggatgatg 6420 cccactttgt gccacatgat ggtggctact gcctgtaggc attttccagt gactgaaaga 6480 ggctgctagt ggtcgggatg agatatcatc caatttccta aaaagactga acccttcata 6540 ttccccagaa gaataacagc tgttccccac ctcccacaca tctgcatcaa gctgaagttc 6600 tgtgtcctcg tgagctgatt tcacctttgc acagatcttg ggggaggtga tgacaataca 6660 ccctggacct caactttctc tgtctgaagc tgcagggggc ccctgaaggg tgggggagat 6720 ggcaggccca ccaggatacc ctgtgctgat caatcctctt ctctcttctc cagggcttct 6780 gcactgactc ctgagactgt tttaactaag actggttatc actcttctgt gatgcctgct 6840 tgtccctgcc cagaattccc agctgcctgt gtcagcttgt ccccctgaga tcaaagtcct 6900 acagtggctg tcacgcaacc accaggtcat ctcctttcat ccccacccca aggcgctggc 6960 tgtgactctg cttcctgcac tgacccagag cc 6992 //