Dbfetch
ID MN125340; SV 1; linear; genomic DNA; STD; HUM; 6320 BP. XX AC MN125340; XX DT 24-OCT-2019 (Rel. 142, Created) DT 24-OCT-2019 (Rel. 142, Last updated, Version 1) XX DE Homo sapiens isolate NGS-102967 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*04:01:01:NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6320 RA Vianna R., Porto L.C.; RT ; RL Submitted (01-JUL-2019) to the INSDC. RL Laboratorio de Histocompatibilidade e Criopreservacao - HLA/UERJ, Rio de RL Janeiro State University, Av Marechal Rondon 381, Rio de Janeiro, RJ RL 20950-003, Brazil XX DR MD5; cb105469ac2d06b95d73fecc8a0cd030. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin v. 3.1.3; TypeStream CC Visual v. 1.3.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6320 FT /organism="Homo sapiens" FT /isolate="NGS-102967" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <285..>5683 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*04:01:01:NEW" FT mRNA join(<285..366,4226..4471,4884..5165,5529..>5683) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*04:01:01:NEW" FT /product="MHC class II antigen" FT CDS join(285..366,4226..4471,4884..5165,5529..5683) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*04:01:01:NEW" FT /product="MHC class II antigen" FT /protein_id="QFQ66427.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVTKHNLNILIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL" XX SQ Sequence 6320 BP; 1844 A; 1347 C; 1374 G; 1755 T; 0 other; aagattccaa tttagtgtcc tccctctatt catagaatat ttcctcaagt ccactctgag 60 tggaggctgc gtcacaacca ggggatttcc ctgtctcctt ccagggctct taatacaaac 120 tcttcaacta gtaactgagg tgtcatcata ggggagtttt ctaattagcc aaaacctgac 180 ctggcagggt ttggtttggg tgtcttcaga tttgcttgtc tcgaggtcct cacaattgct 240 ctacagctca gagcagcaac tgctgaggct gccttgggaa gaggatgatc ctaaacaaag 300 ctctgctgct gggggccctt gccctgacca ccgtgatgag cccctgtgga ggtgaagaca 360 ttgtgggtga gtgcatgagt gagggatgtt ctctggagct ggaagagagg aaatcgaaga 420 aaagagagaa agcgattttg cagagaaatt gtagagattt cctaagggcc ccttcagtat 480 taagagattt aaaaattacg gctgtttctc cttcaggaaa ccagagtccc aacctactct 540 ttttgttatc tatgctgttg gcgttcacta aggatgctat tctgtttata ttgtattcag 600 tcactacagc ctggaggtct ctatgtcatt ccatcatgac tgcctcaaaa attggtgagg 660 tttccatcag tcgataattt tttattatta aaaatttgtg aagtatcatt ctcaaatttc 720 cctgaacaac ttttgaagct tttcggatgt ctcctgtagt agaccttggg gtaaatgatt 780 ccatcaatta tatactctat agatattaag aaagatgccc ttttctttct ctcagactta 840 cttacatttc cacatgggaa ctggcacagg tggggagtgg gtaaaggagt ccagcaggct 900 gaatgccttc aacaatcatt ttaccacatg gtcctcactt actctcagct gcctcatttg 960 tgtcacctca caaataatca aataaaatgg gcatgtagtt aagctttgta aatagtgaaa 1020 acatgaatgt caattttatt tttacatatt tccattatag gagtagcttc acatttcttt 1080 tctttagcaa aataaggaat ccttttattt taaaattgag aatttatagt agaaaaactt 1140 gctaaattaa atcattttgt tctcaaatta tcaacccaaa ttacctgttg ttcacctcat 1200 ctaatgaagt cctataaaaa gaaaagtggg ttagacatgg tggctcatgc ctgtaatccc 1260 agcactttgg gaggctgagg caggaggatc ctttgagccc aggagttcga gaccagcctg 1320 ggcaacatag caagacctca tctctacaaa aaataaaaat tagccaggtg tggtggtgcg 1380 tgcctgggtg ccagctactc agaaggctgc aatgggagga ctgcttgagt ccaggaggcg 1440 gaagctgcag tgagccatga tggcaccact acactccagc cagggcaaca gagagagacc 1500 ctgtcccaaa aagaaagagg aaagaaagaa agaaaggaag gaaagaaaga aagaaggaag 1560 taaggaagga aagaaggaag gaagggagaa ggggaaggga agggaaggaa ggaaggaaag 1620 gaaagggaag ggaggaaaga aggaaggaaa aaagaaaaag aaagaaagta gaaaggaaga 1680 aagaagaaag aaagaagaaa gaaaggaaag aaaagaggga aggaaagaaa gaagaaggaa 1740 ggaagcacag attaattatt aattatttgg tctctcttag tctcctctgt ctttgttgtc 1800 catctcttcc tacccctctt catgcattcc tttctccctc ttccctttca ggatccatct 1860 ctgactccct gcttctttat atggacagtg ggtttgtaaa acaaaagttg aaaaatcaga 1920 tagttaaaag gtgaagtgaa ctggaaggtc taaacttcca caaccttatt aaccatggct 1980 gctcccattc tgattttgtt cggcagtgga agttccacct gcttctccag agcacttggc 2040 ttctttgttc caaatttcct ttcttcaacc tcacaccaga gtgccctggt caggctcggc 2100 tcatccatta ggcacaacgt gggcaatgca gagaaccctc catactgtaa agccacatga 2160 gaatgtttta actcctttta agattagaaa aaaatgaaat ttcagagccc aagaaaatgt 2220 tttaattcag cctagattgt attgtcttta taccaattca gtcataaaat acaattttcc 2280 atatttttat ggaggaaggg gcccacaaaa gcaagagtgc ttagggctca catgtcagaa 2340 cgcagccctg gtcatggctg atcctggcct tcgtatgatt ctgctagtgt gcctgtccgt 2400 cttccccaga atctatgtgg tcctcaaata tagcaactgt aattcaaaac acgtttgagc 2460 acacagtaag ctaagtttta aggattcaaa gacgaaaagt catgctgtct tccctgcaga 2520 gggtgctcag actagtgatg gaaacagtat gggatgcagg aaagcagaag gccattgctg 2580 agcagggcag tggactcagc agaggctgaa actatacaaa tgacttggtt ccagctgggc 2640 cagcagggtg acatcctcca gcaaaactcg gcacccaaga caagtcccag atgaaaagaa 2700 ggattgcttt gtgtttgata aggagtcaag gtttattgca aggataagaa ggctttgttg 2760 gtggcctgtt aagaccatcc agggcagtca tactggataa ggaggaaggt gagctggaag 2820 aggaacagac aaacagccag atattgagat ggaagaggtg gaggtcataa cgtggtaaaa 2880 aatatgttga tgagaggact tagctacaaa gttgttaact taagcataaa ccgcaaggat 2940 gaattttagg atttctccag gaagtcctaa aagataattt catttcaggg agaaaaacaa 3000 caaaccactg caaagaccag gcaacacgaa aggataatgt agttttgttt gcttggcaga 3060 tacttatgaa agatgttgga ctgtaaggct gttgatagcc tcctcacaga acgtgctaca 3120 gtacattgta tctactccct tacctacctg actcttccac tgttcagttt gtttcttaat 3180 ggtagaccat gcctgattgg tgttttacac atcccctgct atgtctgaca cttgtgaatg 3240 ctcagaaagt ggggaaggaa ggaaagatac aacagtaaaa ggcttacacg tcttgacaag 3300 aatgtccagt tcggctcatt tggctggagc catatcgcat ggctgccatt ctgctctggc 3360 atcctcagac aagcacactg cccattagag gaaaaagggt ttaatttagc tgagtcctca 3420 agtgaatata agtgttaagt cagaacactg tagacattta gtaacctcct tcagaggaaa 3480 aaaaaaaaaa aggtgggggg aaatgacaga aatccaaaaa ctagtagagc ttccattctt 3540 catttcagaa gaaatcagtt gctctcctct aaggatcatt actattaaca aaacagagac 3600 cttgaaggag gcattgttta tttattatat attttgtaat gttattacca ttcttgttat 3660 actctttctt ataccctaca attgttagca aacattattt taaattaata agatcctgca 3720 tgcttttcct tttttaaaaa aaagaaagac ctctgtgtag agtgtcctgt tctgagccag 3780 tcctgagagg aaagaaagta caatcagttt gttattaact gatgaaagaa ttaagtgaaa 3840 gatgaatctt aggaagcaga gggaagtaaa cctagtctct gactaagaaa gctaaatacc 3900 ataataactc attcattcct tcttttgttc aattacagta tttaatcgta agtccatgat 3960 gtgccaggca ctcaggaaat agtaaaaact ggacatgtga tattctgccc ttgtgtagca 4020 cacattatag tgggaaagaa agcgcaattt taaccggaca actaccaaca ctaagagcgg 4080 aggaagcagg ggctggaaat gtccacaggc tgtgccaaag atgaagctcg taatatttga 4140 aagtcagttt cttccatcat tttgtgtatt aaggttcttt cttcccctgt tctccacctt 4200 cttgcttgtc atcttcactc atcagctgac catgttgcct cttatggtgt aaacttgtac 4260 cagtcttacg gtccctctgg ccagtacacc catgaatttg atggagacga gcagttctac 4320 gtggacctgg ggaggaagga gactgtctgg tgtttgcctg ttctcagaca atttagattt 4380 gacccgcaat ttgcactgac aaacatcgct gtgacaaaac acaacttgaa catcctgatt 4440 aaacgctcca actctactgc tgctaccaat ggtatgtgtc cacaattctg cccctcttta 4500 ctgatctatc ccttcatacc aagtttcatt attttacttc caagaggtcc ccagatcttc 4560 tcatggcaat tgctgaaatt ctatcacttc ccatctctaa aatcacatat tcccatgtaa 4620 tacaagggtc tttccattat ccattcatta aatccttcta ggagaggtct catcaacctc 4680 ctactttatt aaacatgccc acagagagaa gggcatagga ataaagcaga ggcaatgtgt 4740 cgttgctccc aagcagaagg taaataagac ctctttgact atcaggtggt gaaatgctgg 4800 taggagggct cttccaggat gtaatgcaga agctcatggc agagctattc acacttcaca 4860 tcagtgctgt ttcctcacca cagaggttcc tgaggtcaca gtgttttcca agtctcccgt 4920 gacgctgggt cagcccaaca ccctcatctg tcttgtggac aacatctttc ctcctgtggt 4980 caacatcaca tggctgagca atgggcactc agtcacagaa ggtgtttctg agaccagctt 5040 cctctccaag agtgatcatt ccttcttcaa gatcagttac ctcaccttcc tcccttctgc 5100 tgatgagatt tatgactgca aggtggagca ctggggcctg gacgagcctc ttctgaaaca 5160 ctggggtaag gatgagttcc accacttttt gatgctttct tgtctgtcaa gttcagaact 5220 tcctgccttt tactcctata tcccaaaact tgtttttcac acttcatggg tttctttctt 5280 tcttttgaaa gaataaagca acaaaagcaa agatttattg aaaatgaaag tacacttcac 5340 agggtgggaa cgggcctgag cataggggct caagagccac ttcatgggtt tctaatgata 5400 gacttcactc tcctccctaa gctgaggacc ttgagtcttt gcagagccaa ccctccaccc 5460 catcccatcc cacacacatg cacatgagca cactctgctt tctgacctca acgacttcat 5520 atccacagag cctgagattc cagcccctat gtcagagctc acagagactg tggtctgcgc 5580 cctgggattg tctgtgggcc tcgtgggcat tgtggtgggc actgtcttca tcatccgagg 5640 cctgcgttca gttggtgctt ccagacacca agggcccttg tgaatcccat cctggaaggg 5700 aaggtaagat tgagatttgt tagagctgaa tccgcagtat gagaggaagg aaagtggagg 5760 aggctgtgga caagaatggt tgaaagttgt aggggaattg ggaagtggca tgatgatgac 5820 ataggagcgg cctaggaccc atccatctca tgtctgtcct gttgcaggtg catcgccatc 5880 tacaggagca gaagagtgga cttgctacat gacctagcat tattttctgg ccccatttat 5940 catatccctt ttctcctcca aatgtttctc ctctcacctc ttctgtggga cttaaattgc 6000 tatatctgct cagagctcac aaatgccttt gaattatttc cctgacttcc tgattttttt 6060 cttttctcaa gtgttaccta ctaagagatg cctggagtaa gccacccagc tacctaattc 6120 ctcagtaacc tccatctata atctccatgg aagcaacaaa ttccctttat gagatatatg 6180 tcaaattttt ccatctttca tccagggctg actgaaaccg tggctaagaa ttgggagact 6240 ctcttgtttc aagccaattt aacatcattt accagatcat ttgtcatgtc cagtaacaca 6300 gaagcaacca actacagtat 6320 //