Dbfetch
ID MH605199; SV 1; linear; genomic DNA; STD; HUM; 6415 BP.
XX
AC MH605199;
XX
DT 11-FEB-2019 (Rel. 139, Created)
DT 24-MAY-2019 (Rel. 140, Last updated, Version 2)
XX
DE Homo sapiens MHC class II DQ beta chain (HLA-DQB1) gene, HLA-DQB1*05var
DE allele, exons 1 through 5 and partial cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-6415
RA Rudilla F.;
RT "A novel HLA-DQB1 allele";
RL Unpublished.
XX
RN [2]
RP 1-6415
RA Rudilla F.;
RT ;
RL Submitted (10-JUL-2018) to the INSDC.
RL Histocompatibility lab, Banc de Sang i Teixits Barcelona, Passeig taulat
RL 116, Barcelona, Catalonia, Barcelona 08005, Spain
XX
DR MD5; 1f07e7a9bd546c1e8c5fa03b4a8bfe38.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: GenDX v. IMGT/HLA 3.31.0
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..6415
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>6415
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT mRNA join(<1..177,1636..1905,4415..4696,5208..>5318)
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT /product="MHC class II DQ beta chain"
FT exon <1..177
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT /number=1
FT 5'UTR <1..68
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT CDS join(69..177,1636..1905,4415..4696,5208..>5318)
FT /codon_start=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT /product="MHC class II DQ beta chain"
FT /db_xref="GOA:A0A411CXD3"
FT /db_xref="InterPro:IPR000353"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR014745"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="UniProtKB/TrEMBL:A0A411CXD3"
FT /protein_id="QAY18421.2"
FT /translation="MSWKKSLRIPGDLRVATVTLMLAILSSSLAEGRDSPEDFVYQFKG
FT LCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYRAVTPQGRPVAEYWNSQKEVLEGAR
FT ASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEALNHHNLLICSVTDFYPSQIKVRW
FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCQVEHPSLQSPITVEWRA
FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRK"
FT exon 1636..1905
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT /number=2
FT exon 4415..4696
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT /number=3
FT exon 5208..5318
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05var"
FT /number=4
XX
SQ Sequence 6415 BP; 1629 A; 1458 C; 1587 G; 1741 T; 0 other;
gccaggtaca tcagatccat caggtctgag ctgtgttgac taccactact tttcccttcg 60
tctcaattat gtcttggaag aagtctttgc ggatccccgg agaccttcgg gtagcaactg 120
tcaccttgat gctggcgatc ctgagctcct cactggctga gggcagagac tctcccggta 180
agtgcaggaa agctgctctc cagagccgcc actctgggaa caggctttcc ttgggctggg 240
gtatggggga tggtgatctc catggtcttg gacacaatct ttcatcaaca tttcctcttt 300
tttgggaaag aaagctatgt tgcattccca tttacctttt agtgatgaaa tgaggacaat 360
ccaatcccca tcctacaggt ttaagcctgg aagaggagga gagaggagag gaaagaggag 420
ataaagtgta catttactac cagtgatagg acaaagtgag catggggtta tttttgaaga 480
tattaatttc tccaaagaca cagcaggatt tgtcatttca gcgtgcccca agactttgcc 540
tggactaaat attatgagat tctgcagtgg gaaatgtaag gcagcgatgg tgtctgtagt 600
ctccgtattt gaggaaaagt agtctgtatt cctgactgac tggagcgttt gtggaggcaa 660
aatcttggta ctgagggaag ctgactggct gaccacagac agggagtctt caggtttcac 720
tgatttatgg gcaaatggtg acttgagtgg gattcagaga cccgagttgt tggtggacta 780
aatttagtag aaaggaggat gtaaagaagg gaaataacac atattatgaa accactcact 840
cagacacaga acaatacttt acataaattc tctctcactc cttctaacat cctgtgtgca 900
gatatcatga ttttctttta cacaattata cttgtgatac ggatattctg cccaatatgg 960
atatacacaa cctggccaag ctggtaactg ccacagttta attggaatct agtttatcaa 1020
attcaaaagc ttatgctctt tccatgaata aatatttcta tctaggactc agagttgtag 1080
gtcctttcca acatagaagg gagtgaacct caacgggtct tgggagggta aatccaggca 1140
tgggaaggaa ggtattttac ccagggacca agagaatacg cgtatcagaa cgaggacaag 1200
attaattcct ggacctgtcg catcattccc ttgaactcac aggtttatgt ggataagttt 1260
atctctgagg tttccaggag ctgcatgaaa aatgggattt catgcgagaa cgccccgatc 1320
cctctaagtg cagaggtcca tgtaaaatca gcccgactgc ctcttcgctg ggttcactgg 1380
ctcaggcagg gacagggctt tccgcccttt cctgcctgta ggaaggcgga ttcccgaagc 1440
ccccagagag ggcgggcagg gctgggcaga gccgccggga ggatcccagg tctggggcgc 1500
caggcacggg ctggcgggaa ctggaggtcg cgcgggcggt tccacagctc cggtccgggt 1560
cagggcggcg gctgggggcg cagccgggct agggccaggc tggggcctga ctgactggcc 1620
cgtgattccc cgcagaggat ttcgtgtacc agtttaaggg cctgtgctac ttcaccaacg 1680
ggacggagcg cgtgcggggt gtgaccagac acatctataa ccgagaggag tacgtgcgct 1740
tcgacagcga cgtgggggtg taccgggcag tgacgccgca ggggcggcct gttgccgagt 1800
actggaacag ccagaaggaa gtcctggagg gggcccgggc gtcggtggac agggtgtgca 1860
gacacaacta cgaggtggcg taccgcggga tcctgcagag gagaggtgag cgtcgtcgcc 1920
cctccgtgag gcccaccgtt ggccgggacc tctagtctct gtgctgggag gggcgatggg 1980
gttgcggcct ctgaaacctg agccccgttt attccacccc aggggacagg agttggcggc 2040
gtgagtggtg gggcaggtgc atcagatggg cggggaccta gggcagagca gggagacaag 2100
cagagttggc caggctgcct agtgtccccc cagggtcctc gtctgttggc ctcgtcctcc 2160
gctctgcacg tttctcgcct cgtgccttat gtgtttgcct cctcgtgcct tacctttgct 2220
aagcagttct ctctgccccc aatgcccacc ctcttcccct gcccgtccgc cccactagca 2280
ctgccccatt cagcaaggcc cacgtgcgca gctcgcgccg caggaagctt caggcttggc 2340
ctggtggagt tagggctgcc ccacaactgc gcccagggca tccagcaatt acagttgcaa 2400
aataagatat tttgactttt tggcttcaaa tcattattca tcgtaattct gttttcctaa 2460
atggctatca ctaatggcgg agatttttga ggtgggagac tgtttaaatt attgcatgct 2520
tggtacctga cactttgact ggtatgtggt atgagctcaa tgatcttctg ttaaattcat 2580
gaataaatgt actcagctgc ccatccactt aggctcaaga aaaaaacaga ggcttacaaa 2640
tggactttgt taattatttt ctatcatttt gcctaatgct ttaaagtaaa ctcttattga 2700
ctaggatctt aatagaattt gtgaatacaa agtctgagaa aaaaagtgtt tgctaaaaat 2760
aaaaacaatg cttgaatgac gttgtaaggc agagttttaa tttcttagac aagctgaaca 2820
aatggcacaa tgcaaagggc agaagtttgg gaataaatag gttgaagcca ttaaattatt 2880
agataaaaat agtttcaggt tgcttttggc ctgggttctc ccctccctcc atcactatcc 2940
acttcaggaa taaacattct gaaagtcaat tttacccatt caggtagcac ttatttctag 3000
acagttgcct tatcaaatac catatatgtt gtgccattta atctcacagt tacctgtgca 3060
ttagagatta gcatcaccac ttgatatatc ctaatattgg tacaggataa acactttaag 3120
taatcagccc acaattactc accaagacct taagcctccc aaagtataaa ccattcttat 3180
gttcctcagt gtacatccat agagtctaag ggatgtaagg ccttgttgaa gccagttttg 3240
accagaagca gcaatgagcc tattcctgtt tgttctccat gttaatgggg cattgaaaat 3300
tcactgatta atcaatccct agtctgaccc cagtgttatc tatgcaggtt cacaaaactt 3360
ttagattact ttacaccccc ttgccttctt ttgactcaca ttctaatgcc agcaagtact 3420
tatatttttg ctatttcagt tctatttcca taaaatttat tttatcatct tttctcataa 3480
aattgtgccc tctattttac tcccagtctg tttaagatga acaaatctta caaggtcaca 3540
tagctgactg tgatatcagt tggactccag gaaggagaac ctaaagaaaa gttcaagtcc 3600
aagcagaaac cgtgattcct tccggatgat ggctcaagag tgatgtttaa ctgggatgca 3660
acctgctgac ctcagcaaat cctagttata tgtatgtgtt cacattacag gctcattagc 3720
ccaggccgac ctctgcatgg atctcagaat attttctatg gagaacatac atgataatgt 3780
ctgatttcag aacaagaaag taattctcaa tagcaaggaa atggagtagg gtagacagct 3840
agtaactaaa ctcacttgtg cgttaagaag aaattaagga aaaaagaaaa taagagaaca 3900
tattactaaa taaagaaaca cacattaaat atttgctata gtttcacact aagagaataa 3960
aggaaatgca ataaagtggc ctgaaaggta aaggatgaga tgtgtaaaag aggcagggaa 4020
agatgtataa taatttttta ctatgagcag caatctgaga agataaagga attgagctgt 4080
gggcaaacat gatgtttgat cagtgttatt tgttttcaag gcctgcctac tttttttttc 4140
aaatattaca aacttttgaa ataacattct ttttgttttt tactgtctgt tactagattg 4200
catattctat aaatgaaggg accatggtat gttgtttatc tttggattct cagtgattgt 4260
caaatttata tttgttgaag gaaccttaat ccaagacttg gactccaggt atctttccac 4320
tctggttcca aggagggacc cttcctcatg gtggacgtgc tgtgtggtct cacgtctcac 4380
tcctgtgtct tttcctgtct gttactgccc ttagtggagc ccacagtgac catctcccca 4440
tccaggacag aggccctcaa ccaccacaac ctgctgatct gctcggtgac agatttctat 4500
ccaagccaga tcaaagtccg gtggtttcgg aatgatcagg aggagacagc cggcgttgtg 4560
tccacccccc tcattaggaa cggtgactgg accttccaga tcctggtgat gctggaaatg 4620
actccccagc gtggagatgt ctacacctgc caagtggagc accccagcct ccagagcccc 4680
atcaccgtgg agtggcgtaa ggagatattg agtttctgtt attatgggcc ccacaagaca 4740
aagagctcct tctgacccat tccttcccat ctcttatccc tgatgtcact actgagctgg 4800
gaatcacagg agactagagc acctctagtt ccatggcgag tgcatcagaa gaatcctgat 4860
ctcatcacct ttccagatgc tagggaaatt actctacata ctgttgctct ggatcccagt 4920
cctgatagct ctgacggact gattcttagg gctggtgatt gggatcttag ggtctaaggt 4980
tatggatgag ttcctgagga gcagagattt gcttccccac tctctcacct acccactgta 5040
tccaaggacc tattgtctgg cctttcccct ccttaggggt ggtctgaatg gagagctagg 5100
ttcctttgat gccttcacct cctgcacctc agactggact tcaactcctc agcagggatg 5160
ctatggggtg tggggacaaa cactgacact caggttctgc tttttagggg ctcagtctga 5220
atctgcccag agcaagatgc tgagtggcgt tggaggcttc gtgctggggc tgatcttcct 5280
tgggcttggc cttatcatcc gtcaaaggag tcggaaaggt gaggaacccc aggggaaaag 5340
gggaagatgg gctgtgaccc agaccctctg ttcagagtgg tcctgtctgt agattagctc 5400
tttcctcctg accctgagag gaagtgcgag gagacaggac aagatgggag gaggcattgg 5460
aatctgattt tactggttga aaggtagcgc tgtcacagag ctgactgata gagcttattc 5520
cagggcatcc ttaccattca tcattgtctc actggctcct ttccaaaagc ttcctccatt 5580
aagagggtca gagcctcagc ctcctttctt tctggtgaca atttcctttg ttttagggga 5640
ttttaaatta gggtgctgaa ggcctggaag aacatgggtg ggaagagaat gtaactctaa 5700
gtcatgtgtg tcattttcct ttggggtgag agagtggctg tttgtgtaat gagacctttc 5760
tctgcataac ttccttttgt aagacctcaa gggcctccac cagcaggtaa tatttcagcc 5820
atgatccagt gtggggaggc acaggtataa gagggaagag catgagctga gtgtacctga 5880
ccacagtggt ccatgttcgt ggcctatttg ctgctatgag gatcaagact taggggagaa 5940
gtttgccagt ttctaggaat ctccagacat tgttccccag aaccaagcct taactttggt 6000
ggcatcttct tgtgaaatgt ggagccagaa ccacagctta aatgttagac actaggatga 6060
tgcccacttt gtgccacatg atggtggcta ctgcctgtag gcattttcca gtgactgaaa 6120
gaggctgcta gtggtcggga tgagatatca tccaatttcc taaaaagact gaacccttca 6180
tattccccag aagaataaca gctgttcccc acctcccaca catctgcatc aagctgaagt 6240
tctgtgtcct cgtgagctga tttcaccttt gcacagatct tgggggaggt gatgacaata 6300
caccctggac ctcaactttc tctgtctgaa gctgcagggg gcccctgaag ggtgggggag 6360
atggcaggcc caccaggata ccctgtgctg atcaatcctc ttctctcttc tccag 6415
//