Dbfetch

Dbfetch

ID   MH587579; SV 1; linear; genomic DNA; STD; HUM; 1301 BP.
XX
AC   MH587579;
XX
DT   29-AUG-2018 (Rel. 137, Created)
DT   29-AUG-2018 (Rel. 137, Last updated, Version 1)
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DE   Homo sapiens MHC class II antigen (HLA-DRB1) gene, HLA-DRB1*11:17 allele,
DE   exons 1 through 6 and complete cds.
XX
KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1301
RA   Sherrill J., Ho C.-S., Barker D., Turner T.R.;
RT   "The sequence of exons 1-6 of HLA-DRB1*11:17";
RL   Unpublished.
XX
RN   [2]
RP   1-1301
RA   Sherrill J., Ho C.-S., Barker D., Turner T.R.;
RT   ;
RL   Submitted (05-JUL-2018) to the INSDC.
RL   Histocompatibility Laboratory, Gift of Life Michigan, 3861 Research Park
RL   Drive, Ann Arbor, MI 48108, USA
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DR   MD5; aef483772a2d8d884df953ce570844d0.
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1301
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1301
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT   mRNA            join(<1..100,201..470,571..852,953..1063,1164..1187,
FT                   1288..>1301)
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /product="MHC class II antigen"
FT   CDS             join(1..100,201..470,571..852,953..1063,1164..1187,
FT                   1288..1301)
FT                   /codon_start=1
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /product="MHC class II antigen"
FT                   /db_xref="GOA:A0A346DAR0"
FT                   /db_xref="InterPro:IPR000353"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014745"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="UniProtKB/TrEMBL:A0A346DAR0"
FT                   /protein_id="AXM44151.1"
FT                   /translation="MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECH
FT                   FFNGTERVRFLDRYFHNQEEFVRFDSDVGEYRAVTELGRPDEEYWNSQKDLLERRRAEV
FT                   DTYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN
FT                   GQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSE
FT                   SAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS"
FT   exon            <1..100
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /number=1
FT   gap             101..200
FT                   /estimated_length=unknown
FT   exon            201..470
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /number=2
FT   gap             471..570
FT                   /estimated_length=unknown
FT   exon            571..852
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /number=3
FT   gap             853..952
FT                   /estimated_length=unknown
FT   exon            953..1063
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /number=4
FT   gap             1064..1163
FT                   /estimated_length=unknown
FT   exon            1164..1187
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /number=5
FT   gap             1188..1287
FT                   /estimated_length=unknown
FT   exon            1288..>1301
FT                   /gene="HLA-DRB1"
FT                   /allele="HLA-DRB1*11:17"
FT                   /number=6
XX
SQ   Sequence 1301 BP; 170 A; 198 C; 262 G; 171 T; 500 other;
     atggtgtgtc tgaggctccc tggaggctcc tgcatggcag ttctgacagt gacactgatg        60
     gtgctgagct ccccactggc tttggctggg gacaccagac nnnnnnnnnn nnnnnnnnnn       120
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       180
     nnnnnnnnnn nnnnnnnnnn cacgtttctt ggagtactct acgtctgagt gtcatttctt       240
     caatgggacg gagcgggtgc ggttcctgga cagatacttc cataaccagg aggagttcgt       300
     gcgcttcgac agcgacgtgg gggagtaccg ggcggtgacg gagctggggc ggcctgatga       360
     ggagtactgg aacagccaga aggacctcct ggagcggagg cgggccgagg tggacaccta       420
     ttgcagacac aactacgggg ttgtggagag cttcacagtg cagcggcgag nnnnnnnnnn       480
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       540
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn tccatcctaa ggtgactgtg tatccttcaa       600
     agacccagcc cctgcagcac cacaacctgc tggtctgttc tgtgagtggt ttctatccag       660
     gcagcattga agtcaggtgg ttccggaatg gccaggaaga gaagactggg gtggtgtcca       720
     caggcctgat ccacaatgga gactggacct tccagaccct ggtgatgctg gaaacagttc       780
     ctcggagtgg agaggtttac acctgccaag tggagcaccc aagcgtgaca agccctctca       840
     cagtggaatg gannnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngagcacgg       960
     tctgaatctg cacagagcaa gatgctgagt ggagtcgggg gctttgtgct gggcctgctc      1020
     ttccttgggg ccgggctgtt catctacttc aggaatcaga aagnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnngacactc tggacttcag ccaagagnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnngat tcctgagctg a                          1301
//